Wall clock time and date at job start Mon Mar 30 2020 02:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46966 * 110.99610 * 2 1 4 4 C 1.53325 * 109.14041 * 51.85858 * 3 2 1 5 5 C 1.51558 * 108.04736 * 49.10552 * 4 3 2 6 6 S 1.75563 * 125.74830 * 164.38813 * 5 4 3 7 7 C 1.75770 * 91.23502 * 180.02562 * 6 5 4 8 8 C 1.39912 * 125.39913 * 179.97438 * 7 6 5 9 9 H 1.08008 * 120.00044 * 179.97438 * 8 7 6 10 10 C 1.40071 * 120.00049 * 359.97438 * 8 7 6 11 11 N 1.30869 * 119.99891 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00089 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46948 * 90.00044 * 12 10 8 14 14 H 1.48499 * 109.47137 * 210.00253 * 12 10 8 15 15 H 1.48503 * 109.47271 * 330.00593 * 12 10 8 16 16 C 1.37890 * 109.20152 * 359.97115 * 7 6 5 17 17 C 1.36050 * 123.71225 * 344.37996 * 5 4 3 18 18 C 1.46898 * 110.99954 * 124.37547 * 2 1 3 19 19 H 1.08992 * 109.47459 * 59.99950 * 1 2 3 20 20 H 1.09004 * 109.47040 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47033 * 300.00053 * 1 2 3 22 22 H 1.09000 * 109.52202 * 171.75898 * 3 2 1 23 23 H 1.09001 * 109.52715 * 291.95975 * 3 2 1 24 24 H 1.09002 * 109.74625 * 168.73824 * 4 3 2 25 25 H 1.08999 * 109.75025 * 289.41536 * 4 3 2 26 26 H 0.96997 * 120.00185 * 180.02562 * 11 10 8 27 27 H 1.08000 * 122.51247 * 179.97438 * 16 7 6 28 28 H 1.09000 * 109.61611 * 48.38649 * 18 2 1 29 29 H 1.09001 * 109.61135 * 168.92475 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9956 1.3721 0.0000 4 6 1.3406 2.1620 1.1392 5 6 1.4421 1.3333 2.4041 6 16 1.2015 1.9244 4.0396 7 6 1.5155 0.3275 4.7036 8 6 1.5001 -0.0023 6.0632 9 1 1.7060 -1.0155 6.3755 10 6 1.2175 0.9815 7.0194 11 7 0.9674 2.2091 6.6409 12 14 1.1961 0.5411 8.8346 13 1 2.5541 0.7287 9.4054 14 1 0.2341 1.4206 9.5461 15 1 0.7833 -0.8764 8.9952 16 6 1.7794 -0.5487 3.6721 17 6 1.7383 0.0055 2.4152 18 6 1.9955 -0.7743 1.1319 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 3.0754 1.3478 0.1473 23 1 1.7675 1.8499 -0.9528 24 1 1.8612 3.1097 1.2771 25 1 0.2929 2.3483 0.9033 26 1 0.7721 2.8905 7.3030 27 1 2.0025 -1.5921 3.8395 28 1 1.4900 -1.7387 1.1821 29 1 3.0673 -0.9261 1.0044 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214701155.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:42 Heat of formation + Delta-G solvation = -7.143986 kcal Electronic energy + Delta-G solvation = -13141.787542 eV Core-core repulsion = 10961.451282 eV Total energy + Delta-G solvation = -2180.336260 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 223.073 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.21099 -36.92113 -35.31369 -32.28987 -30.90808 -28.30572 -27.04320 -24.26922 -23.55519 -21.32202 -19.72918 -18.57796 -17.09552 -16.79086 -16.34847 -15.53650 -15.33224 -15.16688 -14.46063 -13.88921 -13.70819 -13.32636 -13.23518 -12.93569 -12.81328 -12.68693 -12.30574 -12.13314 -11.98117 -11.85398 -11.55519 -11.13355 -10.90433 -9.22113 -9.15153 -8.77276 -8.60661 -6.44480 0.77256 1.33988 1.46373 1.50894 1.68022 2.06121 2.18762 2.25486 3.08222 3.22243 4.17575 4.20837 4.40644 4.42528 4.63974 4.69020 4.81128 4.86579 4.88900 4.99389 5.07273 5.12027 5.17088 5.35980 5.65088 5.81442 6.04440 6.16532 6.17092 6.36431 6.65899 6.66940 8.06468 Molecular weight = 223.07amu Principal moments of inertia in cm(-1) A = 0.059774 B = 0.008151 C = 0.007542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.314806 B = 3434.199595 C = 3711.810209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.532 5.532 3 C 0.065 3.935 4 C -0.049 4.049 5 C -0.382 4.382 6 S 0.099 5.901 7 C 0.005 3.995 8 C -0.429 4.429 9 H 0.092 0.908 10 C 0.014 3.986 11 N -0.813 5.813 12 Si 1.009 2.991 13 H -0.258 1.258 14 H -0.261 1.261 15 H -0.256 1.256 16 C -0.371 4.371 17 C -0.082 4.082 18 C 0.119 3.881 19 H 0.084 0.916 20 H 0.066 0.934 21 H 0.016 0.984 22 H 0.067 0.933 23 H 0.100 0.900 24 H 0.060 0.940 25 H 0.056 0.944 26 H 0.305 0.695 27 H 0.094 0.906 28 H 0.078 0.922 29 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.468 -0.048 -4.755 4.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.253 5.253 3 C -0.065 4.065 4 C -0.090 4.090 5 C -0.498 4.498 6 S 0.361 5.639 7 C -0.115 4.115 8 C -0.464 4.464 9 H 0.110 0.890 10 C -0.203 4.203 11 N -0.440 5.440 12 Si 0.828 3.172 13 H -0.183 1.183 14 H -0.185 1.185 15 H -0.180 1.180 16 C -0.396 4.396 17 C -0.095 4.095 18 C -0.011 4.011 19 H 0.103 0.897 20 H 0.085 0.915 21 H 0.034 0.966 22 H 0.086 0.914 23 H 0.118 0.882 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.118 0.882 27 H 0.112 0.888 28 H 0.096 0.904 29 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.726 1.342 -4.571 4.819 hybrid contribution 0.072 -1.140 1.203 1.659 sum -0.655 0.202 -3.368 3.437 Atomic orbital electron populations 1.22387 0.87448 1.01948 1.00732 1.62506 1.08589 1.13756 1.40473 1.22204 0.99114 0.87668 0.97482 1.20473 1.00077 0.97063 0.91381 1.25096 1.26106 0.98511 1.00092 1.84213 1.73063 1.11801 0.94809 1.22016 0.97104 0.95196 0.97191 1.19450 1.39115 0.97926 0.89913 0.88976 1.27157 0.91751 0.93634 1.07772 1.68924 1.32515 1.03274 1.39331 0.84756 0.79613 0.79745 0.73094 1.18256 1.18482 1.17951 1.19724 1.28771 0.99087 0.92055 1.19873 1.00374 0.93753 0.95488 1.21126 1.00103 0.95372 0.84535 0.89739 0.91549 0.96557 0.91418 0.88163 0.92184 0.92519 0.88230 0.88780 0.90389 0.90075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.73 8.81 127.69 1.13 1.85 15 2 N -0.53 -17.87 5.20 -922.92 -4.80 -22.67 15 3 C 0.06 2.06 6.02 86.40 0.52 2.58 15 4 C -0.05 -1.86 5.70 30.23 0.17 -1.69 15 5 C -0.38 -18.03 5.64 25.45 0.14 -17.89 15 6 S 0.10 5.22 20.24 -56.49 -1.14 4.08 15 7 C 0.00 0.27 6.17 22.59 0.14 0.41 15 8 C -0.43 -23.13 9.29 23.12 0.21 -22.92 15 9 H 0.09 4.75 7.85 -2.91 -0.02 4.73 15 10 C 0.01 0.67 5.50 85.28 0.47 1.14 15 11 N -0.81 -40.93 10.65 21.86 0.23 -40.70 15 12 Si 1.01 36.54 29.56 68.60 2.03 38.56 15 13 H -0.26 -8.99 7.11 99.48 0.71 -8.28 15 14 H -0.26 -8.84 7.11 99.48 0.71 -8.13 15 15 H -0.26 -9.05 7.11 99.48 0.71 -8.35 15 16 C -0.37 -19.75 10.02 22.00 0.22 -19.53 15 17 C -0.08 -3.91 5.33 -20.03 -0.11 -4.02 15 18 C 0.12 4.54 6.02 86.09 0.52 5.06 15 19 H 0.08 2.18 8.14 -2.39 -0.02 2.16 15 20 H 0.07 1.96 8.03 -2.38 -0.02 1.94 15 21 H 0.02 0.60 5.54 -2.39 -0.01 0.59 15 22 H 0.07 2.19 8.06 -2.39 -0.02 2.17 15 23 H 0.10 2.55 8.14 -2.39 -0.02 2.53 15 24 H 0.06 2.17 8.14 -2.39 -0.02 2.15 15 25 H 0.06 2.06 6.98 -2.39 -0.02 2.04 15 26 H 0.30 13.66 8.30 -92.71 -0.77 12.89 15 27 H 0.09 4.86 8.06 -2.91 -0.02 4.84 15 28 H 0.08 2.84 7.98 -2.39 -0.02 2.82 15 29 H 0.08 2.94 8.14 -2.39 -0.02 2.92 15 Total: -1.00 -59.58 248.85 0.87 -58.70 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: 1.14 Total: 17.01 kcal Atomic # 6 Polarization: -58.41 SS G_CDS: 3.42 Total: -55.00 kcal Atomic # 7 Polarization: -58.79 SS G_CDS: -4.57 Total: -63.36 kcal Atomic # 14 Polarization: 36.54 SS G_CDS: 2.03 Total: 38.56 kcal Atomic # 16 Polarization: 5.22 SS G_CDS: -1.14 Total: 4.08 kcal Total: -59.58 0.87 -58.70 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214701155.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.560 kcal (2) G-P(sol) polarization free energy of solvation -59.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds