Wall clock time and date at job start Mon Mar 30 2020 03:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.34954 * 125.50634 * 2 1 4 4 H 0.97007 * 125.63584 * 0.02562 * 3 2 1 5 5 C 1.37702 * 108.72842 * 179.97438 * 3 2 1 6 6 C 1.46496 * 126.26086 * 180.02562 * 5 3 2 7 7 O 1.21625 * 119.99720 * 180.02562 * 6 5 3 8 8 O 1.34896 * 120.00244 * 359.97438 * 6 5 3 9 9 C 1.37990 * 107.47555 * 0.02562 * 5 3 2 10 10 C 1.50696 * 126.51942 * 180.25963 * 9 5 3 11 11 C 1.35481 * 125.50613 * 179.97438 * 2 1 3 12 12 C 1.50700 * 126.08174 * 0.02562 * 11 2 1 13 13 C 1.50700 * 109.47038 * 269.99976 * 12 11 2 14 14 H 1.08006 * 120.00079 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00356 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99395 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00359 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47028 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47199 * 119.99751 * 17 15 13 20 20 H 1.48504 * 109.46895 * 239.99567 * 17 15 13 21 21 H 1.08995 * 109.47325 * 270.02203 * 1 2 3 22 22 H 1.08999 * 109.46887 * 30.02502 * 1 2 3 23 23 H 1.09004 * 109.47091 * 150.02482 * 1 2 3 24 24 H 0.96693 * 116.99562 * 179.97438 * 8 6 5 25 25 H 1.08996 * 109.47568 * 269.69266 * 10 9 5 26 26 H 1.09004 * 109.46616 * 29.68957 * 10 9 5 27 27 H 1.09004 * 109.47207 * 149.68497 * 10 9 5 28 28 H 1.09003 * 109.46964 * 29.99802 * 12 11 2 29 29 H 1.09000 * 109.47368 * 150.00079 * 12 11 2 30 30 H 0.97007 * 119.99292 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2908 1.0986 0.0000 4 1 1.9773 2.0166 0.0004 5 6 3.6092 0.7011 0.0006 6 6 4.7798 1.5819 0.0013 7 8 5.8990 1.1059 0.0013 8 8 4.6164 2.9210 0.0009 9 6 3.6260 -0.6787 0.0004 10 6 4.8479 -1.5607 0.0063 11 6 2.2939 -1.1029 0.0005 12 6 1.8179 -2.5327 0.0006 13 6 1.6587 -3.0091 1.4214 14 1 1.8805 -2.3431 2.2423 15 6 1.2300 -4.2950 1.6736 16 7 0.9595 -5.1057 0.6740 17 14 1.0320 -4.8852 3.4348 18 1 1.3972 -3.7894 4.3680 19 1 -0.3792 -5.2844 3.6674 20 1 1.9213 -6.0512 3.6689 21 1 -0.3634 0.0004 1.0276 22 1 -0.3633 0.8898 -0.5142 23 1 -0.3633 -0.8902 -0.5135 24 1 5.4184 3.4610 0.0018 25 1 5.1445 -1.7776 -1.0199 26 1 5.6624 -1.0495 0.5195 27 1 4.6207 -2.4928 0.5237 28 1 0.8589 -2.5964 -0.5136 29 1 2.5477 -3.1587 -0.5128 30 1 0.6582 -6.0106 0.8514 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238489208.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:57 Heat of formation + Delta-G solvation = -69.650792 kcal Electronic energy + Delta-G solvation = -15030.370177 eV Core-core repulsion = 12404.570548 eV Total energy + Delta-G solvation = -2625.799629 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.02631 -39.32438 -35.91240 -33.56591 -32.20077 -31.41471 -28.24022 -26.51071 -26.36106 -23.16656 -21.76131 -19.22323 -18.44815 -17.66252 -17.09426 -16.22005 -15.51005 -14.79543 -14.41051 -14.02930 -13.45734 -12.81515 -12.48781 -12.31823 -12.23677 -11.95434 -11.76563 -11.45082 -11.37646 -11.24122 -10.94807 -10.63170 -10.40189 -10.11574 -9.64091 -9.35072 -8.34412 -7.84482 -7.36973 -5.95954 -3.98280 1.60458 3.17868 3.21988 3.33121 3.41198 3.45805 3.65994 3.67612 4.51386 5.36880 5.39821 5.48515 5.66130 5.82787 6.02138 6.08478 6.36563 6.42078 6.47439 6.50705 6.65655 6.89865 7.08350 7.31175 7.52280 7.71555 7.90740 7.99426 8.02371 8.13927 8.46262 9.07533 9.65106 11.13511 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.034414 B = 0.007728 C = 0.007047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.425795 B = 3622.208589 C = 3972.089133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.055 3.945 3 N -0.537 5.537 4 H 0.412 0.588 5 C -0.082 4.082 6 C 0.554 3.446 7 O -0.515 6.515 8 O -0.528 6.528 9 C -0.046 4.046 10 C -0.090 4.090 11 C -0.128 4.128 12 C 0.081 3.919 13 C -0.503 4.503 14 H 0.055 0.945 15 C 0.057 3.943 16 N -0.896 5.896 17 Si 0.889 3.111 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.284 1.284 21 H 0.075 0.925 22 H 0.053 0.947 23 H 0.090 0.910 24 H 0.409 0.591 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.026 0.974 29 H 0.028 0.972 30 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.004 12.912 -1.998 13.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.061 4.061 3 N -0.134 5.134 4 H 0.249 0.751 5 C -0.190 4.190 6 C 0.401 3.599 7 O -0.405 6.405 8 O -0.341 6.341 9 C -0.056 4.056 10 C -0.147 4.147 11 C -0.134 4.134 12 C 0.044 3.956 13 C -0.541 4.541 14 H 0.073 0.927 15 C -0.144 4.144 16 N -0.536 5.536 17 Si 0.717 3.283 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.210 1.210 21 H 0.093 0.907 22 H 0.072 0.928 23 H 0.108 0.892 24 H 0.267 0.733 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.097 0.903 28 H 0.044 0.956 29 H 0.046 0.954 30 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.887 12.536 -2.034 12.840 hybrid contribution 0.242 0.514 1.022 1.169 sum 2.129 13.050 -1.011 13.262 Atomic orbital electron populations 1.20347 0.87788 1.02772 1.03000 1.20371 0.93724 0.85763 1.06277 1.41503 1.04904 1.08189 1.58823 0.75107 1.18767 0.81685 0.92260 1.26292 1.19618 0.87985 0.79736 0.72540 1.90892 1.25345 1.76088 1.48191 1.84600 1.42946 1.19614 1.86929 1.19968 0.96115 0.89677 0.99798 1.20350 0.93758 0.98923 1.01699 1.20071 0.90648 0.97334 1.05315 1.17732 0.96255 0.84454 0.97159 1.21158 1.43907 0.97082 0.91985 0.92687 1.24987 0.95721 0.96832 0.96819 1.69969 1.46333 1.06890 1.30415 0.86575 0.77609 0.78760 0.85332 1.19814 1.21110 1.21045 0.90680 0.92773 0.89167 0.73340 0.92013 0.91309 0.90304 0.95597 0.95404 0.93071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.24 10.20 36.01 0.37 -0.87 16 2 C 0.06 1.02 7.10 -82.20 -0.58 0.43 16 3 N -0.54 -8.66 6.07 -5.82 -0.04 -8.69 16 4 H 0.41 5.17 8.96 -40.82 -0.37 4.80 16 5 C -0.08 -1.50 7.10 -81.99 -0.58 -2.08 16 6 C 0.55 9.08 8.30 34.06 0.28 9.36 16 7 O -0.52 -9.53 15.60 -19.36 -0.30 -9.83 16 8 O -0.53 -6.32 13.44 -41.03 -0.55 -6.87 16 9 C -0.05 -0.96 6.22 -104.13 -0.65 -1.60 16 10 C -0.09 -1.78 9.55 36.00 0.34 -1.43 16 11 C -0.13 -2.80 5.29 -105.02 -0.56 -3.36 16 12 C 0.08 2.06 4.96 -29.04 -0.14 1.92 16 13 C -0.50 -13.88 9.09 -34.44 -0.31 -14.20 16 14 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -26.20 13.29 55.43 0.74 -25.47 16 17 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 18 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 22 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.09 1.47 7.09 -51.93 -0.37 1.10 16 24 H 0.41 2.87 9.11 45.56 0.42 3.28 16 25 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.07 1.31 6.49 -51.93 -0.34 0.97 16 27 H 0.08 1.64 8.02 -51.93 -0.42 1.23 16 28 H 0.03 0.67 7.09 -51.93 -0.37 0.31 16 29 H 0.03 0.75 8.01 -51.93 -0.42 0.34 16 30 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 267.77 15.07 4.04 4.04 Total: -1.00 -32.31 267.77 -5.73 -38.04 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -2.66 Total: 2.66 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: -1.93 Total: -10.33 kcal Atomic # 7 Polarization: -34.86 SS G_CDS: 0.70 Total: -34.16 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: -0.85 Total: -16.70 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -32.31 -5.73 -38.04 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238489208.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.607 kcal (2) G-P(sol) polarization free energy of solvation -32.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds