Wall clock time and date at job start Mon Mar 30 2020 03:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.34954 * 125.50634 * 2 1 4 4 H 0.97007 * 125.63584 * 0.02562 * 3 2 1 5 5 C 1.37702 * 108.72842 * 179.97438 * 3 2 1 6 6 C 1.46496 * 126.26086 * 180.02562 * 5 3 2 7 7 O 1.21625 * 119.99720 * 180.02562 * 6 5 3 8 8 O 1.34896 * 120.00244 * 359.97438 * 6 5 3 9 9 C 1.37990 * 107.47555 * 0.02562 * 5 3 2 10 10 C 1.50696 * 126.51942 * 180.25963 * 9 5 3 11 11 C 1.35481 * 125.50613 * 179.97438 * 2 1 3 12 12 C 1.50700 * 126.08174 * 0.02562 * 11 2 1 13 13 C 1.50700 * 109.47038 * 269.99976 * 12 11 2 14 14 H 1.08006 * 120.00079 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00356 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99395 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00359 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47028 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47199 * 119.99751 * 17 15 13 20 20 H 1.48504 * 109.46895 * 239.99567 * 17 15 13 21 21 H 1.08995 * 109.47325 * 270.02203 * 1 2 3 22 22 H 1.08999 * 109.46887 * 30.02502 * 1 2 3 23 23 H 1.09004 * 109.47091 * 150.02482 * 1 2 3 24 24 H 0.96693 * 116.99562 * 179.97438 * 8 6 5 25 25 H 1.08996 * 109.47568 * 269.69266 * 10 9 5 26 26 H 1.09004 * 109.46616 * 29.68957 * 10 9 5 27 27 H 1.09004 * 109.47207 * 149.68497 * 10 9 5 28 28 H 1.09003 * 109.46964 * 29.99802 * 12 11 2 29 29 H 1.09000 * 109.47368 * 150.00079 * 12 11 2 30 30 H 0.97007 * 119.99292 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2908 1.0986 0.0000 4 1 1.9773 2.0166 0.0004 5 6 3.6092 0.7011 0.0006 6 6 4.7798 1.5819 0.0013 7 8 5.8990 1.1059 0.0013 8 8 4.6164 2.9210 0.0009 9 6 3.6260 -0.6787 0.0004 10 6 4.8479 -1.5607 0.0063 11 6 2.2939 -1.1029 0.0005 12 6 1.8179 -2.5327 0.0006 13 6 1.6587 -3.0091 1.4214 14 1 1.8805 -2.3431 2.2423 15 6 1.2300 -4.2950 1.6736 16 7 0.9595 -5.1057 0.6740 17 14 1.0320 -4.8852 3.4348 18 1 1.3972 -3.7894 4.3680 19 1 -0.3792 -5.2844 3.6674 20 1 1.9213 -6.0512 3.6689 21 1 -0.3634 0.0004 1.0276 22 1 -0.3633 0.8898 -0.5142 23 1 -0.3633 -0.8902 -0.5135 24 1 5.4184 3.4610 0.0018 25 1 5.1445 -1.7776 -1.0199 26 1 5.6624 -1.0495 0.5195 27 1 4.6207 -2.4928 0.5237 28 1 0.8589 -2.5964 -0.5136 29 1 2.5477 -3.1587 -0.5128 30 1 0.6582 -6.0106 0.8514 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238489208.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:57 Heat of formation + Delta-G solvation = -91.813195 kcal Electronic energy + Delta-G solvation = -15031.331211 eV Core-core repulsion = 12404.570548 eV Total energy + Delta-G solvation = -2626.760663 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.46128 -40.58749 -37.08601 -35.52051 -33.79423 -33.05726 -29.93812 -28.17954 -27.76960 -25.11593 -23.14424 -20.63894 -19.88242 -19.12411 -18.36346 -18.32883 -16.80385 -16.44420 -16.16025 -15.43658 -14.81716 -14.28314 -14.15652 -13.91426 -13.82061 -13.68376 -13.13043 -13.02768 -13.01305 -12.62353 -12.56460 -12.50712 -12.15192 -11.71241 -11.48095 -11.41049 -10.50846 -9.39034 -8.90989 -8.09194 -6.20731 0.22902 1.41825 1.43431 1.55401 1.76799 1.94007 2.15842 2.40694 2.49178 3.20470 4.06920 4.14935 4.31007 4.48577 4.66556 4.79136 4.84478 4.89188 4.99331 5.19231 5.26673 5.47918 5.49592 5.50700 5.66040 5.86414 5.96310 6.21208 6.35292 6.68025 6.92030 7.00652 7.46857 8.98935 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.034414 B = 0.007728 C = 0.007047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.425795 B = 3622.208589 C = 3972.089133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.069 3.931 3 N -0.511 5.511 4 H 0.434 0.566 5 C -0.079 4.079 6 C 0.565 3.435 7 O -0.539 6.539 8 O -0.508 6.508 9 C -0.079 4.079 10 C -0.082 4.082 11 C -0.173 4.173 12 C 0.095 3.905 13 C -0.513 4.513 14 H 0.048 0.952 15 C 0.006 3.994 16 N -0.931 5.931 17 Si 0.956 3.044 18 H -0.268 1.268 19 H -0.275 1.275 20 H -0.281 1.281 21 H 0.080 0.920 22 H 0.097 0.903 23 H 0.072 0.928 24 H 0.435 0.565 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.054 0.946 28 H 0.010 0.990 29 H -0.005 1.005 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.629 15.260 -1.225 15.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.050 4.050 3 N -0.109 5.109 4 H 0.275 0.725 5 C -0.189 4.189 6 C 0.412 3.588 7 O -0.430 6.430 8 O -0.323 6.323 9 C -0.088 4.088 10 C -0.139 4.139 11 C -0.178 4.178 12 C 0.058 3.942 13 C -0.551 4.551 14 H 0.066 0.934 15 C -0.191 4.191 16 N -0.572 5.572 17 Si 0.781 3.219 18 H -0.193 1.193 19 H -0.201 1.201 20 H -0.207 1.207 21 H 0.098 0.902 22 H 0.116 0.884 23 H 0.091 0.909 24 H 0.297 0.703 25 H 0.086 0.914 26 H 0.092 0.908 27 H 0.073 0.927 28 H 0.028 0.972 29 H 0.014 0.986 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.517 14.955 -1.262 15.085 hybrid contribution 0.382 -0.099 0.735 0.834 sum 1.900 14.856 -0.527 14.986 Atomic orbital electron populations 1.20422 0.85499 1.04100 1.03702 1.20578 0.94999 0.85288 1.04157 1.41392 1.03878 1.08824 1.56823 0.72506 1.18857 0.83114 0.91833 1.25058 1.19224 0.86682 0.80917 0.71939 1.90894 1.26025 1.76983 1.49138 1.84520 1.44573 1.17384 1.85849 1.20100 0.95781 0.91352 1.01611 1.20229 0.93942 0.97851 1.01841 1.19803 0.92202 0.96479 1.09298 1.17377 0.94482 0.86766 0.95578 1.21408 1.43594 0.97306 0.92841 0.93380 1.25801 0.95375 0.96971 1.00963 1.70083 1.47189 1.07306 1.32603 0.85538 0.77903 0.78170 0.80289 1.19280 1.20069 1.20726 0.90156 0.88428 0.90869 0.70305 0.91379 0.90822 0.92728 0.97206 0.98632 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.26 10.20 71.24 0.73 -1.54 16 2 C 0.07 2.43 7.10 41.44 0.29 2.73 16 3 N -0.51 -15.05 6.07 -172.33 -1.05 -16.09 16 4 H 0.43 9.04 8.96 -92.70 -0.83 8.21 16 5 C -0.08 -2.75 7.10 40.32 0.29 -2.46 16 6 C 0.57 17.04 8.30 69.97 0.58 17.62 16 7 O -0.54 -18.95 15.60 19.43 0.30 -18.64 16 8 O -0.51 -10.05 13.44 -58.10 -0.78 -10.83 16 9 C -0.08 -3.32 6.22 -19.55 -0.12 -3.44 16 10 C -0.08 -3.32 9.55 71.23 0.68 -2.64 16 11 C -0.17 -7.67 5.29 -20.12 -0.11 -7.78 16 12 C 0.10 5.07 4.96 29.10 0.14 5.22 16 13 C -0.51 -29.12 9.09 25.60 0.23 -28.89 16 14 H 0.05 2.73 7.74 -2.91 -0.02 2.71 16 15 C 0.01 0.37 5.46 84.65 0.46 0.83 16 16 N -0.93 -55.80 13.29 21.45 0.28 -55.51 16 17 Si 0.96 44.42 29.54 68.60 2.03 46.44 16 18 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 19 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 20 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 21 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 22 H 0.10 1.90 8.14 -2.39 -0.02 1.89 16 23 H 0.07 2.35 7.09 -2.38 -0.02 2.34 16 24 H 0.43 4.15 9.11 -74.06 -0.67 3.48 16 25 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 26 H 0.07 2.85 6.49 -2.39 -0.02 2.84 16 27 H 0.05 2.41 8.02 -2.38 -0.02 2.40 16 28 H 0.01 0.53 7.09 -2.39 -0.02 0.52 16 29 H 0.00 -0.27 8.01 -2.39 -0.02 -0.29 16 30 H 0.26 14.79 8.31 -92.70 -0.77 14.02 16 Total: -1.00 -70.97 267.77 3.64 -67.33 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -0.32 Total: 7.67 kcal Atomic # 6 Polarization: -23.54 SS G_CDS: 3.18 Total: -20.36 kcal Atomic # 7 Polarization: -70.85 SS G_CDS: -0.76 Total: -71.61 kcal Atomic # 8 Polarization: -28.99 SS G_CDS: -0.48 Total: -29.47 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Total: -70.97 3.64 -67.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238489208.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.486 kcal (2) G-P(sol) polarization free energy of solvation -70.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds