Wall clock time and date at job start Mon Mar 30 2020 02:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30870 * 1 3 3 Si 1.86805 * 119.99633 * 2 1 4 4 H 1.48502 * 109.46738 * 239.99996 * 3 2 1 5 5 H 1.48503 * 109.47013 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47256 * 120.00230 * 3 2 1 7 7 C 1.39936 * 120.00101 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99289 * 162.66243 * 7 2 1 9 9 C 1.41144 * 120.00096 * 342.66370 * 7 2 1 10 10 C 1.40727 * 120.29219 * 334.82935 * 9 7 2 11 11 C 1.36492 * 119.92894 * 180.28004 * 10 9 7 12 12 C 1.50699 * 119.72885 * 179.74382 * 11 10 9 13 13 H 1.09001 * 109.47628 * 340.01574 * 12 11 10 14 14 O 1.42908 * 109.46881 * 220.02139 * 12 11 10 15 15 C 1.53003 * 109.47500 * 100.02061 * 12 11 10 16 16 N 1.46896 * 109.47154 * 184.99792 * 15 12 11 17 17 C 1.38822 * 120.53879 * 359.76245 * 11 10 9 18 18 C 1.38301 * 120.59052 * 359.97438 * 17 11 10 19 19 C 1.38447 * 120.05169 * 0.02562 * 18 17 11 20 20 O 1.35644 * 120.26436 * 180.02562 * 19 18 17 21 21 H 0.96999 * 120.00059 * 0.02562 * 1 2 3 22 22 H 1.08003 * 120.03345 * 359.97438 * 10 9 7 23 23 H 0.96702 * 113.99583 * 299.99814 * 14 12 11 24 24 H 1.08999 * 109.46603 * 304.99894 * 15 12 11 25 25 H 1.08999 * 109.46899 * 64.99674 * 15 12 11 26 26 H 1.00906 * 110.99643 * 180.02562 * 16 15 12 27 27 H 1.00903 * 111.00401 * 303.95150 * 16 15 12 28 28 H 1.08000 * 119.70063 * 179.97438 * 17 11 10 29 29 H 1.08002 * 119.97581 * 179.97438 * 18 17 11 30 30 H 0.96699 * 114.00365 * 85.36033 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 3.0963 1.6965 -1.2125 5 1 1.2775 2.7465 -0.0006 6 1 3.0964 1.6966 1.2124 7 6 2.0084 -1.2119 0.0005 8 1 3.0516 -1.2331 -0.2782 9 6 1.3508 -2.4063 0.3653 10 6 0.2227 -2.3674 1.2057 11 6 -0.4041 -3.5275 1.5583 12 6 -1.6084 -3.4810 2.4632 13 1 -1.6192 -2.5356 3.0055 14 8 -1.5466 -4.5634 3.3942 15 6 -2.8819 -3.6021 1.6239 16 7 -4.0567 -3.4371 2.4902 17 6 0.0589 -4.7498 1.0907 18 6 1.1623 -4.8130 0.2593 19 6 1.8168 -3.6515 -0.1138 20 8 2.8991 -3.7084 -0.9294 21 1 -0.4850 0.8400 -0.0004 22 1 -0.1438 -1.4210 1.5751 23 1 -1.5339 -5.4375 2.9807 24 1 -2.8855 -2.8290 0.8556 25 1 -2.9138 -4.5839 1.1516 26 1 -4.9113 -3.5134 1.9590 27 1 -4.0426 -4.1018 3.2492 28 1 -0.4472 -5.6594 1.3786 29 1 1.5143 -5.7694 -0.0984 30 1 2.6814 -3.7257 -1.8714 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238551867.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:39 Heat of formation + Delta-G solvation = -85.530998 kcal Electronic energy + Delta-G solvation = -15144.285057 eV Core-core repulsion = 12517.796811 eV Total energy + Delta-G solvation = -2626.488247 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.69190 -37.13686 -34.99350 -33.66669 -33.39708 -29.75018 -29.67051 -26.01776 -25.14648 -22.02548 -21.29879 -19.93668 -17.51149 -16.78637 -16.26585 -15.74868 -15.37234 -14.90292 -14.07765 -13.95624 -13.55366 -13.34369 -12.88890 -12.56690 -11.86540 -11.63909 -11.60708 -11.30354 -11.10837 -10.74050 -10.52028 -10.36469 -10.12566 -9.33595 -9.23791 -9.02496 -8.47494 -7.54586 -7.29880 -6.84849 -4.42443 2.59162 2.80592 3.03657 3.06478 3.16295 3.87977 4.41925 4.80886 4.99860 5.32886 5.56011 5.57266 5.74990 5.90579 6.12797 6.24187 6.38959 6.45271 6.96903 7.09639 7.23018 7.31126 7.39861 7.62722 7.64162 7.80764 7.91072 8.08075 8.16034 8.40050 8.68987 8.75940 9.14008 10.07557 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.024766 B = 0.009936 C = 0.007578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.313791 B = 2817.221744 C = 3693.798055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.074 3.926 3 Si 0.912 3.088 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.447 4.447 8 H 0.085 0.915 9 C 0.096 3.904 10 C -0.137 4.137 11 C -0.109 4.109 12 C 0.156 3.844 13 H 0.104 0.896 14 O -0.564 6.564 15 C 0.039 3.961 16 N -0.848 5.848 17 C -0.225 4.225 18 C -0.111 4.111 19 C -0.027 4.027 20 O -0.496 6.496 21 H 0.283 0.717 22 H 0.123 0.877 23 H 0.365 0.635 24 H 0.085 0.915 25 H 0.025 0.975 26 H 0.335 0.665 27 H 0.341 0.659 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.356 0.644 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.435 -3.626 0.230 5.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.476 4.476 8 H 0.103 0.897 9 C 0.093 3.907 10 C -0.157 4.157 11 C -0.110 4.110 12 C 0.097 3.903 13 H 0.122 0.878 14 O -0.369 6.369 15 C -0.092 4.092 16 N -0.378 5.378 17 C -0.245 4.245 18 C -0.130 4.130 19 C -0.073 4.073 20 O -0.302 6.302 21 H 0.094 0.906 22 H 0.141 0.859 23 H 0.212 0.788 24 H 0.103 0.897 25 H 0.043 0.957 26 H 0.147 0.853 27 H 0.153 0.847 28 H 0.105 0.895 29 H 0.112 0.888 30 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -4.036 -2.219 1.324 4.793 hybrid contribution -0.173 -0.697 -1.381 1.557 sum -4.209 -2.916 -0.057 5.121 Atomic orbital electron populations 1.69808 1.07600 1.29687 1.34374 1.25990 0.94787 1.01555 0.92121 0.86304 0.80126 0.79825 0.80169 1.18911 1.20250 1.18676 1.19515 0.98336 0.90705 1.39047 0.89730 1.17836 0.91070 0.91739 0.90082 1.20817 0.98557 0.96512 0.99799 1.19692 0.97317 0.94438 0.99574 1.20795 0.90493 0.90230 0.88744 0.87779 1.86546 1.96932 1.16855 1.36536 1.22480 0.90840 1.00163 0.95718 1.58678 1.04342 1.59961 1.14796 1.19820 1.01375 0.95314 1.07946 1.20770 0.95916 0.96317 1.00002 1.18511 0.94295 0.92522 1.01939 1.84743 1.30653 1.96358 1.18486 0.90568 0.85932 0.78779 0.89658 0.95651 0.85349 0.84660 0.89524 0.88817 0.79258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.79 10.97 55.55 0.61 -19.18 16 2 C 0.07 1.83 5.14 -17.33 -0.09 1.74 16 3 Si 0.91 18.60 29.59 -169.99 -5.03 13.57 16 4 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 5 H -0.28 -5.48 7.11 56.52 0.40 -5.07 16 6 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 7 C -0.45 -11.86 8.71 -37.84 -0.33 -12.19 16 8 H 0.08 2.24 7.66 -52.49 -0.40 1.83 16 9 C 0.10 2.54 5.58 -106.68 -0.60 1.95 16 10 C -0.14 -3.48 8.24 -39.27 -0.32 -3.80 16 11 C -0.11 -2.43 4.94 -105.04 -0.52 -2.95 16 12 C 0.16 2.97 3.43 -27.88 -0.10 2.88 16 13 H 0.10 2.14 7.97 -51.93 -0.41 1.72 16 14 O -0.56 -9.92 12.71 -35.23 -0.45 -10.36 16 15 C 0.04 0.64 6.43 -3.82 -0.02 0.62 16 16 N -0.85 -12.09 9.62 -10.37 -0.10 -12.19 16 17 C -0.22 -4.81 9.31 -39.34 -0.37 -5.18 16 18 C -0.11 -2.51 9.98 -39.48 -0.39 -2.90 16 19 C -0.03 -0.68 6.74 -38.33 -0.26 -0.94 16 20 O -0.50 -11.40 12.80 -18.63 -0.24 -11.64 16 21 H 0.28 6.49 8.30 -40.82 -0.34 6.16 16 22 H 0.12 3.21 6.14 -52.48 -0.32 2.88 16 23 H 0.37 5.30 7.47 45.56 0.34 5.64 16 24 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 25 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.33 3.97 9.08 -39.29 -0.36 3.61 16 27 H 0.34 4.51 8.55 -39.29 -0.34 4.17 16 28 H 0.09 1.58 6.75 -52.49 -0.35 1.22 16 29 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 30 H 0.36 6.60 9.06 45.56 0.41 7.02 16 LS Contribution 260.85 15.07 3.93 3.93 Total: -1.00 -28.67 260.85 -6.11 -34.78 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: -1.83 Total: 21.85 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: -2.99 Total: -20.77 kcal Atomic # 7 Polarization: -31.88 SS G_CDS: 0.51 Total: -31.37 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -0.69 Total: -22.00 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.57 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -28.67 -6.11 -34.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238551867.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.752 kcal (2) G-P(sol) polarization free energy of solvation -28.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds