Wall clock time and date at job start Mon Mar 30 2020 02:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30870 * 1 3 3 Si 1.86805 * 119.99633 * 2 1 4 4 H 1.48502 * 109.46738 * 239.99996 * 3 2 1 5 5 H 1.48503 * 109.47013 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47256 * 120.00230 * 3 2 1 7 7 C 1.39936 * 120.00101 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99289 * 162.66243 * 7 2 1 9 9 C 1.41144 * 120.00096 * 342.66370 * 7 2 1 10 10 C 1.40727 * 120.29219 * 334.82935 * 9 7 2 11 11 C 1.36492 * 119.92894 * 180.28004 * 10 9 7 12 12 C 1.50699 * 119.72885 * 179.74382 * 11 10 9 13 13 H 1.09001 * 109.47628 * 340.01574 * 12 11 10 14 14 O 1.42908 * 109.46881 * 220.02139 * 12 11 10 15 15 C 1.53003 * 109.47500 * 100.02061 * 12 11 10 16 16 N 1.46896 * 109.47154 * 184.99792 * 15 12 11 17 17 C 1.38822 * 120.53879 * 359.76245 * 11 10 9 18 18 C 1.38301 * 120.59052 * 359.97438 * 17 11 10 19 19 C 1.38447 * 120.05169 * 0.02562 * 18 17 11 20 20 O 1.35644 * 120.26436 * 180.02562 * 19 18 17 21 21 H 0.96999 * 120.00059 * 0.02562 * 1 2 3 22 22 H 1.08003 * 120.03345 * 359.97438 * 10 9 7 23 23 H 0.96702 * 113.99583 * 299.99814 * 14 12 11 24 24 H 1.08999 * 109.46603 * 304.99894 * 15 12 11 25 25 H 1.08999 * 109.46899 * 64.99674 * 15 12 11 26 26 H 1.00906 * 110.99643 * 180.02562 * 16 15 12 27 27 H 1.00903 * 111.00401 * 303.95150 * 16 15 12 28 28 H 1.08000 * 119.70063 * 179.97438 * 17 11 10 29 29 H 1.08002 * 119.97581 * 179.97438 * 18 17 11 30 30 H 0.96699 * 114.00365 * 85.36033 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 3.0963 1.6965 -1.2125 5 1 1.2775 2.7465 -0.0006 6 1 3.0964 1.6966 1.2124 7 6 2.0084 -1.2119 0.0005 8 1 3.0516 -1.2331 -0.2782 9 6 1.3508 -2.4063 0.3653 10 6 0.2227 -2.3674 1.2057 11 6 -0.4041 -3.5275 1.5583 12 6 -1.6084 -3.4810 2.4632 13 1 -1.6192 -2.5356 3.0055 14 8 -1.5466 -4.5634 3.3942 15 6 -2.8819 -3.6021 1.6239 16 7 -4.0567 -3.4371 2.4902 17 6 0.0589 -4.7498 1.0907 18 6 1.1623 -4.8130 0.2593 19 6 1.8168 -3.6515 -0.1138 20 8 2.8991 -3.7084 -0.9294 21 1 -0.4850 0.8400 -0.0004 22 1 -0.1438 -1.4210 1.5751 23 1 -1.5339 -5.4375 2.9807 24 1 -2.8855 -2.8290 0.8556 25 1 -2.9138 -4.5839 1.1516 26 1 -4.9113 -3.5134 1.9590 27 1 -4.0426 -4.1018 3.2492 28 1 -0.4472 -5.6594 1.3786 29 1 1.5143 -5.7694 -0.0984 30 1 2.6814 -3.7257 -1.8714 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238551867.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:39 Heat of formation + Delta-G solvation = -109.624664 kcal Electronic energy + Delta-G solvation = -15145.329837 eV Core-core repulsion = 12517.796811 eV Total energy + Delta-G solvation = -2627.533026 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.40760 -38.75073 -36.75497 -35.47098 -34.67852 -31.58277 -31.35394 -27.62933 -26.94162 -23.52527 -23.12516 -21.65435 -19.32709 -18.58553 -17.81159 -17.18507 -16.95805 -16.49599 -15.86320 -15.55979 -15.11546 -14.80528 -14.43336 -14.32479 -13.42358 -13.33165 -13.30217 -12.96235 -12.79931 -12.45198 -12.22726 -12.09243 -11.74160 -11.08556 -10.89871 -10.83406 -9.63931 -9.40719 -9.11171 -8.67339 -6.36615 0.79556 0.99290 1.35866 1.46386 1.50812 2.18011 2.62930 3.36522 3.63204 3.64764 3.97707 4.13261 4.15733 4.32577 4.46166 4.72789 4.87059 4.90929 5.09403 5.26107 5.42153 5.55675 5.81988 5.97359 6.08213 6.20088 6.29865 6.51710 6.63789 6.81202 6.83897 6.85821 7.36885 8.26481 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.024766 B = 0.009936 C = 0.007578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.313791 B = 2817.221744 C = 3693.798055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.037 3.963 3 Si 0.979 3.021 4 H -0.259 1.259 5 H -0.263 1.263 6 H -0.264 1.264 7 C -0.487 4.487 8 H 0.071 0.929 9 C 0.061 3.939 10 C -0.163 4.163 11 C -0.109 4.109 12 C 0.166 3.834 13 H 0.083 0.917 14 O -0.563 6.563 15 C 0.051 3.949 16 N -0.851 5.851 17 C -0.214 4.214 18 C -0.116 4.116 19 C -0.046 4.046 20 O -0.505 6.505 21 H 0.290 0.710 22 H 0.103 0.897 23 H 0.382 0.618 24 H 0.063 0.937 25 H 0.044 0.956 26 H 0.351 0.649 27 H 0.350 0.650 28 H 0.129 0.871 29 H 0.123 0.877 30 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.256 -4.736 0.465 7.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.178 4.178 3 Si 0.799 3.201 4 H -0.184 1.184 5 H -0.187 1.187 6 H -0.189 1.189 7 C -0.516 4.516 8 H 0.090 0.910 9 C 0.058 3.942 10 C -0.182 4.182 11 C -0.110 4.110 12 C 0.107 3.893 13 H 0.101 0.899 14 O -0.371 6.371 15 C -0.080 4.080 16 N -0.383 5.383 17 C -0.233 4.233 18 C -0.135 4.135 19 C -0.091 4.091 20 O -0.314 6.314 21 H 0.101 0.899 22 H 0.121 0.879 23 H 0.232 0.768 24 H 0.081 0.919 25 H 0.062 0.938 26 H 0.165 0.835 27 H 0.164 0.836 28 H 0.147 0.853 29 H 0.141 0.859 30 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -4.879 -3.363 1.547 6.125 hybrid contribution 0.040 -0.523 -1.432 1.525 sum -4.839 -3.886 0.114 6.207 Atomic orbital electron populations 1.69847 1.08714 1.30804 1.34794 1.26725 0.95545 1.04309 0.91261 0.85300 0.78911 0.75858 0.79985 1.18365 1.18748 1.18905 1.19615 0.98062 0.92227 1.41662 0.91046 1.18231 0.92133 0.92779 0.91051 1.20767 0.99383 0.97023 1.01064 1.20058 0.97822 0.93918 0.99183 1.20539 0.90386 0.90124 0.88298 0.89908 1.86532 1.96868 1.17474 1.36201 1.22195 0.90506 1.00314 0.94977 1.58560 1.04273 1.60521 1.14969 1.20299 1.00564 0.96391 1.06070 1.21118 0.95872 0.96692 0.99800 1.18803 0.94762 0.92941 1.02620 1.84659 1.30578 1.96323 1.19805 0.89916 0.87909 0.76842 0.91887 0.93833 0.83513 0.83627 0.85332 0.85945 0.77160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.12 10.97 21.83 0.24 -41.88 16 2 C 0.04 1.90 5.14 85.25 0.44 2.34 16 3 Si 0.98 38.82 29.59 68.60 2.03 40.85 16 4 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 5 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 6 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 7 C -0.49 -26.83 8.71 23.40 0.20 -26.63 16 8 H 0.07 3.96 7.66 -2.91 -0.02 3.93 16 9 C 0.06 3.33 5.58 -21.20 -0.12 3.21 16 10 C -0.16 -8.45 8.24 22.47 0.19 -8.27 16 11 C -0.11 -4.75 4.94 -20.13 -0.10 -4.85 16 12 C 0.17 6.09 3.43 29.85 0.10 6.20 16 13 H 0.08 3.41 7.97 -2.39 -0.02 3.39 16 14 O -0.56 -18.18 12.71 -148.98 -1.89 -20.08 16 15 C 0.05 1.61 6.43 86.30 0.56 2.16 16 16 N -0.85 -22.28 9.62 -186.72 -1.80 -24.08 16 17 C -0.21 -8.57 9.31 22.42 0.21 -8.36 16 18 C -0.12 -5.01 9.98 22.33 0.22 -4.79 16 19 C -0.05 -2.30 6.74 23.08 0.16 -2.14 16 20 O -0.50 -23.27 12.80 -89.58 -1.15 -24.42 16 21 H 0.29 13.58 8.30 -92.71 -0.77 12.81 16 22 H 0.10 5.64 6.14 -2.91 -0.02 5.63 16 23 H 0.38 9.44 7.47 -74.06 -0.55 8.89 16 24 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 25 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.35 7.40 9.08 -89.69 -0.81 6.59 16 27 H 0.35 8.23 8.55 -89.69 -0.77 7.46 16 28 H 0.13 4.03 6.75 -2.91 -0.02 4.02 16 29 H 0.12 4.51 8.06 -2.91 -0.02 4.48 16 30 H 0.37 13.88 9.06 -74.06 -0.67 13.21 16 Total: -1.00 -62.64 260.85 -2.31 -64.94 By element: Atomic # 1 Polarization: 47.39 SS G_CDS: -1.60 Total: 45.80 kcal Atomic # 6 Polarization: -42.99 SS G_CDS: 1.85 Total: -41.14 kcal Atomic # 7 Polarization: -64.40 SS G_CDS: -1.56 Total: -65.96 kcal Atomic # 8 Polarization: -41.45 SS G_CDS: -3.04 Total: -44.49 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 2.03 Total: 40.85 kcal Total: -62.64 -2.31 -64.94 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238551867.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.680 kcal (2) G-P(sol) polarization free energy of solvation -62.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds