Wall clock time and date at job start Mon Mar 30 2020 02:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99882 * 2 1 4 4 H 1.48506 * 109.46823 * 240.00440 * 3 2 1 5 5 H 1.48504 * 109.47023 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47227 * 120.00482 * 3 2 1 7 7 C 1.37878 * 120.00074 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99973 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99872 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.47203 * 299.99955 * 9 7 2 11 11 N 1.46898 * 109.47281 * 59.99909 * 9 7 2 12 12 C 1.50702 * 109.47095 * 180.02562 * 9 7 2 13 13 C 1.38755 * 120.02648 * 284.99870 * 12 9 7 14 14 O 1.35904 * 120.05631 * 0.02562 * 13 12 9 15 15 C 1.38715 * 119.89071 * 180.02562 * 13 12 9 16 16 C 1.38161 * 119.94093 * 359.97438 * 15 13 12 17 17 C 1.38247 * 120.05787 * 0.02562 * 16 15 13 18 18 C 1.38123 * 120.03143 * 105.31429 * 12 9 7 19 19 C 1.50696 * 119.97081 * 0.02562 * 18 12 9 20 20 O 1.42907 * 109.47056 * 180.24902 * 19 18 12 21 21 H 0.96995 * 119.99909 * 0.02562 * 1 2 3 22 22 H 1.00899 * 111.00021 * 60.00071 * 11 9 7 23 23 H 1.00905 * 110.99961 * 183.95097 * 11 9 7 24 24 H 0.96704 * 113.99603 * 270.02921 * 14 13 12 25 25 H 1.07999 * 120.02403 * 179.97438 * 15 13 12 26 26 H 1.07998 * 119.97145 * 180.02562 * 16 15 13 27 27 H 1.08002 * 119.94131 * 179.97438 * 17 16 15 28 28 H 1.08995 * 109.47302 * 300.24844 * 19 18 12 29 29 H 1.09002 * 109.47263 * 60.25218 * 19 18 12 30 30 H 0.96696 * 113.99951 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2840 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6247 -2.5571 0.8897 11 7 0.4060 -2.5767 -1.1996 12 6 2.2303 -3.6446 -0.0005 13 6 2.9178 -3.9703 -1.1609 14 8 2.7095 -3.2567 -2.2986 15 6 3.8182 -5.0256 -1.1579 16 6 4.0286 -5.7492 0.0001 17 6 3.3424 -5.4227 1.1550 18 6 2.4395 -4.3753 1.1528 19 6 1.6875 -4.0270 2.4114 20 8 2.0773 -4.9155 3.4606 21 1 -0.4850 0.8400 -0.0004 22 1 0.9636 -2.5252 -2.0389 23 1 -0.1579 -3.4134 -1.1911 24 1 2.0001 -3.6042 -2.8564 25 1 4.3542 -5.2812 -2.0600 26 1 4.7298 -6.5706 0.0031 27 1 3.5081 -5.9898 2.0590 28 1 1.9172 -3.0013 2.6999 29 1 0.6164 -4.1231 2.2331 30 1 1.6321 -4.7491 4.3027 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238585622.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:12 Heat of formation + Delta-G solvation = -58.475935 kcal Electronic energy + Delta-G solvation = -15485.975895 eV Core-core repulsion = 12860.660844 eV Total energy + Delta-G solvation = -2625.315051 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.60964 -36.97166 -35.58583 -34.44023 -31.67360 -30.41741 -28.88993 -25.89920 -25.52583 -22.80208 -21.04151 -19.98119 -17.52526 -17.11640 -16.37726 -15.58777 -14.94463 -14.70805 -14.49302 -14.13549 -13.78086 -13.56366 -13.03008 -12.43600 -12.07639 -11.59572 -11.40580 -11.09316 -11.01417 -10.79804 -10.62009 -10.03366 -9.95097 -9.66045 -9.11732 -8.37816 -8.03922 -7.87232 -7.04291 -5.84520 -3.96711 1.79241 1.92862 3.38455 3.42109 3.46822 4.14851 4.45497 4.53787 4.87431 5.33158 5.42039 5.42408 5.69501 5.82514 5.91747 6.02829 6.12353 6.33071 6.45958 6.58091 6.87485 6.94840 7.07117 7.37906 7.49996 7.89672 7.95942 8.15865 8.27081 8.64288 9.03864 9.17171 9.70044 11.19948 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.025974 B = 0.010690 C = 0.009009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.742294 B = 2618.567898 C = 3107.225427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.083 3.917 3 Si 0.884 3.116 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.279 1.279 7 C -0.517 4.517 8 H 0.051 0.949 9 C 0.259 3.741 10 H 0.047 0.953 11 N -0.813 5.813 12 C -0.096 4.096 13 C 0.101 3.899 14 O -0.479 6.479 15 C -0.152 4.152 16 C -0.134 4.134 17 C -0.110 4.110 18 C -0.082 4.082 19 C 0.120 3.880 20 O -0.577 6.577 21 H 0.255 0.745 22 H 0.325 0.675 23 H 0.292 0.708 24 H 0.374 0.626 25 H 0.117 0.883 26 H 0.116 0.884 27 H 0.125 0.875 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.650 -9.758 1.389 10.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.124 4.124 3 Si 0.712 3.288 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.205 1.205 7 C -0.556 4.556 8 H 0.069 0.931 9 C 0.150 3.850 10 H 0.064 0.936 11 N -0.346 5.346 12 C -0.100 4.100 13 C 0.056 3.944 14 O -0.288 6.288 15 C -0.171 4.171 16 C -0.152 4.152 17 C -0.128 4.128 18 C -0.083 4.083 19 C 0.043 3.957 20 O -0.383 6.383 21 H 0.065 0.935 22 H 0.143 0.857 23 H 0.102 0.898 24 H 0.230 0.770 25 H 0.135 0.865 26 H 0.134 0.866 27 H 0.143 0.857 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 2.982 -8.830 1.348 9.417 hybrid contribution 0.412 0.035 -0.098 0.425 sum 3.394 -8.795 1.250 9.510 Atomic orbital electron populations 1.70088 1.05579 1.25700 1.47244 1.24917 0.94648 0.98429 0.94357 0.86816 0.79736 0.83647 0.78594 1.20301 1.21399 1.20462 1.20722 0.92132 0.89203 1.53529 0.93058 1.18139 0.87196 0.88687 0.91022 0.93568 1.59306 1.28489 1.41445 1.05312 1.21902 0.98500 0.97851 0.91699 1.18224 0.97162 0.92000 0.86997 1.84981 1.57764 1.53886 1.32162 1.21349 1.00648 0.96168 0.98924 1.20798 1.01055 1.00430 0.92920 1.20903 0.96403 0.97558 0.97923 1.19462 0.98424 0.96376 0.94042 1.20923 0.96844 0.92886 0.85042 1.86375 1.70123 1.59238 1.22517 0.93496 0.85695 0.89829 0.77018 0.86475 0.86645 0.85746 0.91035 0.92262 0.77613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.61 12.77 55.43 0.71 -23.90 16 2 C 0.08 2.32 5.39 -17.82 -0.10 2.22 16 3 Si 0.88 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.52 -14.40 8.54 -34.44 -0.29 -14.69 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.26 6.32 2.52 -70.02 -0.18 6.15 16 10 H 0.05 1.20 6.20 -51.93 -0.32 0.87 16 11 N -0.81 -18.69 8.41 -6.65 -0.06 -18.75 16 12 C -0.10 -2.07 4.89 -104.47 -0.51 -2.58 16 13 C 0.10 2.01 6.48 -39.21 -0.25 1.76 16 14 O -0.48 -9.29 11.13 -19.44 -0.22 -9.51 16 15 C -0.15 -2.64 9.99 -39.43 -0.39 -3.03 16 16 C -0.13 -2.19 10.04 -39.61 -0.40 -2.59 16 17 C -0.11 -1.95 9.37 -39.56 -0.37 -2.32 16 18 C -0.08 -1.61 5.88 -104.65 -0.62 -2.23 16 19 C 0.12 2.12 5.94 36.00 0.21 2.33 16 20 O -0.58 -8.65 12.14 -35.23 -0.43 -9.08 16 21 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 22 H 0.32 7.07 5.22 -39.29 -0.21 6.87 16 23 H 0.29 5.91 9.06 -39.29 -0.36 5.56 16 24 H 0.37 5.55 7.81 45.56 0.36 5.91 16 25 H 0.12 1.75 8.06 -52.49 -0.42 1.32 16 26 H 0.12 1.53 8.06 -52.49 -0.42 1.10 16 27 H 0.12 2.05 7.00 -52.49 -0.37 1.68 16 28 H 0.07 1.35 8.10 -51.93 -0.42 0.93 16 29 H 0.06 1.01 7.61 -51.93 -0.40 0.62 16 30 H 0.38 3.73 9.12 45.56 0.42 4.15 16 LS Contribution 256.64 15.07 3.87 3.87 Total: -1.00 -32.46 256.64 -5.72 -38.19 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: -1.68 Total: 17.38 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: -2.90 Total: -14.98 kcal Atomic # 7 Polarization: -43.30 SS G_CDS: 0.65 Total: -42.65 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.64 Total: -18.59 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -32.46 -5.72 -38.19 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238585622.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.290 kcal (2) G-P(sol) polarization free energy of solvation -32.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds