Wall clock time and date at job start Mon Mar 30 2020 02:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 11 11 N 1.46904 * 109.46860 * 60.28074 * 9 7 2 12 12 C 1.50703 * 109.47151 * 180.27762 * 9 7 2 13 13 C 1.38294 * 119.94520 * 279.73184 * 12 9 7 14 14 C 1.38121 * 120.05421 * 179.72733 * 13 12 9 15 15 C 1.38758 * 119.94152 * 0.52051 * 14 13 12 16 16 O 1.35904 * 120.05147 * 179.72983 * 15 14 13 17 17 C 1.38708 * 119.89091 * 359.74967 * 15 14 13 18 18 C 1.50703 * 120.02750 * 180.02562 * 17 15 14 19 19 O 1.42897 * 109.46854 * 179.97438 * 18 17 15 20 20 C 1.38166 * 119.94458 * 0.02562 * 17 15 14 21 21 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 22 22 H 1.00894 * 111.00177 * 296.04230 * 11 9 7 23 23 H 1.00906 * 110.99862 * 60.00007 * 11 9 7 24 24 H 1.08001 * 119.96903 * 359.97438 * 13 12 9 25 25 H 1.08002 * 120.02914 * 180.25182 * 14 13 12 26 26 H 0.96698 * 113.99696 * 270.01962 * 16 15 14 27 27 H 1.08999 * 109.47526 * 299.98383 * 18 17 15 28 28 H 1.08999 * 109.46566 * 59.98169 * 18 17 15 29 29 H 0.96702 * 114.00008 * 180.02562 * 19 18 17 30 30 H 1.07997 * 119.97425 * 179.97438 * 20 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6245 -2.5529 0.8956 11 7 0.4065 -2.5822 -1.1937 12 6 2.2305 -3.6445 0.0104 13 6 2.8329 -4.0428 -1.1690 14 6 3.7351 -5.0886 -1.1661 15 6 4.0286 -5.7468 0.0197 16 8 4.9118 -6.7797 0.0242 17 6 3.4188 -5.3490 1.2003 18 6 3.7358 -6.0612 2.4901 19 8 2.9885 -5.4716 3.5558 20 6 2.5205 -4.2992 1.1929 21 1 -0.4850 0.8400 0.0004 22 1 -0.3008 -1.8628 -1.1883 23 1 0.9645 -2.5346 -2.0331 24 1 2.6007 -3.5330 -2.0924 25 1 4.2084 -5.3967 -2.0867 26 1 4.5062 -7.6446 -0.1253 27 1 3.4695 -7.1142 2.3986 28 1 4.8014 -5.9729 2.7014 29 1 3.1434 -5.8807 4.4182 30 1 2.0452 -3.9893 2.1118 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238593963.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:17 Heat of formation + Delta-G solvation = -75.634041 kcal Electronic energy + Delta-G solvation = -14986.517499 eV Core-core repulsion = 12360.458417 eV Total energy + Delta-G solvation = -2626.059082 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.48756 -36.73353 -36.54538 -34.15392 -31.49427 -30.81632 -28.83004 -25.83848 -25.52688 -22.75322 -21.56110 -19.53547 -18.06863 -17.06137 -16.49634 -15.67914 -15.11118 -14.82368 -14.50940 -14.27438 -13.86521 -13.27338 -12.92435 -12.55737 -11.95670 -11.78447 -11.51315 -11.17826 -11.08026 -10.78466 -10.65108 -10.14890 -9.96159 -9.89024 -9.59693 -8.65951 -8.18743 -7.74976 -7.18010 -6.08631 -4.25319 1.87410 1.99670 3.21943 3.30671 3.36252 4.22453 4.35132 4.38647 4.64023 5.13193 5.24624 5.41251 5.52963 5.62633 5.89457 6.12322 6.26230 6.43219 6.58410 6.65662 7.00311 7.06403 7.22513 7.44974 7.71757 7.75409 7.83265 7.99951 8.10663 8.67315 8.93082 9.11237 9.46407 10.88896 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.031970 B = 0.007743 C = 0.007239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.601452 B = 3615.192462 C = 3866.759441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.066 3.934 3 Si 0.897 3.103 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.542 4.542 8 H 0.057 0.943 9 C 0.239 3.761 10 H 0.048 0.952 11 N -0.850 5.850 12 C -0.030 4.030 13 C -0.095 4.095 14 C -0.147 4.147 15 C 0.072 3.928 16 O -0.502 6.502 17 C -0.124 4.124 18 C 0.130 3.870 19 O -0.565 6.565 20 C -0.086 4.086 21 H 0.265 0.735 22 H 0.356 0.644 23 H 0.311 0.689 24 H 0.123 0.877 25 H 0.119 0.881 26 H 0.377 0.623 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.376 0.624 30 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.584 -11.165 1.646 12.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.137 4.137 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.582 4.582 8 H 0.075 0.925 9 C 0.129 3.871 10 H 0.066 0.934 11 N -0.380 5.380 12 C -0.030 4.030 13 C -0.114 4.114 14 C -0.165 4.165 15 C 0.028 3.972 16 O -0.310 6.310 17 C -0.124 4.124 18 C 0.053 3.947 19 O -0.370 6.370 20 C -0.105 4.105 21 H 0.075 0.925 22 H 0.172 0.828 23 H 0.120 0.880 24 H 0.141 0.859 25 H 0.137 0.863 26 H 0.231 0.769 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.223 0.777 30 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.402 -10.933 1.548 12.292 hybrid contribution 0.813 1.199 0.148 1.456 sum 6.215 -9.734 1.696 11.672 Atomic orbital electron populations 1.69754 1.05844 1.27119 1.50560 1.25023 0.94952 0.99335 0.94362 0.86454 0.80200 0.83216 0.77667 1.19711 1.20937 1.20813 1.21859 0.93718 0.90958 1.51625 0.92516 1.18022 0.89061 0.88154 0.91883 0.93371 1.59549 1.18419 1.56074 1.03918 1.20577 0.95741 0.94894 0.91834 1.20869 0.95634 0.96036 0.98815 1.21214 0.99674 0.98830 0.96797 1.17971 0.94427 0.92695 0.92141 1.84825 1.34609 1.16824 1.94773 1.19858 0.99359 0.99829 0.93375 1.20625 0.94395 0.94484 0.85234 1.86548 1.69271 1.62142 1.19011 1.20794 0.96887 0.94138 0.98652 0.92501 0.82809 0.87982 0.85942 0.86318 0.76907 0.93233 0.92604 0.77720 0.85126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.81 11.55 55.43 0.64 -24.17 16 2 C 0.07 1.79 5.38 -17.82 -0.10 1.69 16 3 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.54 -14.82 8.70 -34.44 -0.30 -15.12 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.24 6.07 2.95 -70.01 -0.21 5.86 16 10 H 0.05 1.35 8.00 -51.93 -0.42 0.93 16 11 N -0.85 -20.42 9.01 -6.65 -0.06 -20.48 16 12 C -0.03 -0.67 4.90 -104.60 -0.51 -1.18 16 13 C -0.10 -1.91 9.29 -39.60 -0.37 -2.27 16 14 C -0.15 -2.58 9.99 -39.43 -0.39 -2.97 16 15 C 0.07 1.22 6.68 -39.22 -0.26 0.96 16 16 O -0.50 -7.03 12.93 -19.44 -0.25 -7.28 16 17 C -0.12 -2.24 5.89 -104.47 -0.62 -2.85 16 18 C 0.13 1.86 6.91 36.01 0.25 2.11 16 19 O -0.56 -8.16 12.14 -35.23 -0.43 -8.59 16 20 C -0.09 -1.81 8.99 -39.61 -0.36 -2.17 16 21 H 0.27 7.00 8.31 -40.82 -0.34 6.67 16 22 H 0.36 9.12 7.09 -39.30 -0.28 8.84 16 23 H 0.31 7.02 7.33 -39.29 -0.29 6.73 16 24 H 0.12 2.36 6.65 -52.49 -0.35 2.01 16 25 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 26 H 0.38 3.39 9.06 45.56 0.41 3.80 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.38 3.25 9.12 45.56 0.42 3.66 16 30 H 0.13 2.84 6.98 -52.49 -0.37 2.47 16 LS Contribution 260.78 15.07 3.93 3.93 Total: -1.00 -30.99 260.78 -5.73 -36.72 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: -1.68 Total: 19.61 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: -2.86 Total: -15.96 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: 0.58 Total: -44.65 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -0.68 Total: -15.86 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -30.99 -5.73 -36.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238593963.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.911 kcal (2) G-P(sol) polarization free energy of solvation -30.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds