Wall clock time and date at job start Mon Mar 30 2020 02:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 11 11 N 1.46904 * 109.46860 * 60.28074 * 9 7 2 12 12 C 1.50703 * 109.47151 * 180.27762 * 9 7 2 13 13 C 1.38294 * 119.94520 * 279.73184 * 12 9 7 14 14 C 1.38121 * 120.05421 * 179.72733 * 13 12 9 15 15 C 1.38758 * 119.94152 * 0.52051 * 14 13 12 16 16 O 1.35904 * 120.05147 * 179.72983 * 15 14 13 17 17 C 1.38708 * 119.89091 * 359.74967 * 15 14 13 18 18 C 1.50703 * 120.02750 * 180.02562 * 17 15 14 19 19 O 1.42897 * 109.46854 * 179.97438 * 18 17 15 20 20 C 1.38166 * 119.94458 * 0.02562 * 17 15 14 21 21 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 22 22 H 1.00894 * 111.00177 * 296.04230 * 11 9 7 23 23 H 1.00906 * 110.99862 * 60.00007 * 11 9 7 24 24 H 1.08001 * 119.96903 * 359.97438 * 13 12 9 25 25 H 1.08002 * 120.02914 * 180.25182 * 14 13 12 26 26 H 0.96698 * 113.99696 * 270.01962 * 16 15 14 27 27 H 1.08999 * 109.47526 * 299.98383 * 18 17 15 28 28 H 1.08999 * 109.46566 * 59.98169 * 18 17 15 29 29 H 0.96702 * 114.00008 * 180.02562 * 19 18 17 30 30 H 1.07997 * 119.97425 * 179.97438 * 20 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6245 -2.5529 0.8956 11 7 0.4065 -2.5822 -1.1937 12 6 2.2305 -3.6445 0.0104 13 6 2.8329 -4.0428 -1.1690 14 6 3.7351 -5.0886 -1.1661 15 6 4.0286 -5.7468 0.0197 16 8 4.9118 -6.7797 0.0242 17 6 3.4188 -5.3490 1.2003 18 6 3.7358 -6.0612 2.4901 19 8 2.9885 -5.4716 3.5558 20 6 2.5205 -4.2992 1.1929 21 1 -0.4850 0.8400 0.0004 22 1 -0.3008 -1.8628 -1.1883 23 1 0.9645 -2.5346 -2.0331 24 1 2.6007 -3.5330 -2.0924 25 1 4.2084 -5.3967 -2.0867 26 1 4.5062 -7.6446 -0.1253 27 1 3.4695 -7.1142 2.3986 28 1 4.8014 -5.9729 2.7014 29 1 3.1434 -5.8807 4.4182 30 1 2.0452 -3.9893 2.1118 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238593963.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:17 Heat of formation + Delta-G solvation = -102.004860 kcal Electronic energy + Delta-G solvation = -14987.661023 eV Core-core repulsion = 12360.458417 eV Total energy + Delta-G solvation = -2627.202607 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.87403 -38.13670 -37.70956 -35.93666 -33.38555 -32.27126 -30.43310 -27.86291 -26.80365 -24.50964 -23.01741 -21.10863 -19.31120 -18.58558 -18.22921 -17.31188 -16.51410 -16.42076 -15.98072 -15.56056 -15.36598 -14.87217 -14.61945 -14.24695 -13.59223 -13.43179 -13.01165 -12.92602 -12.67277 -12.63875 -12.36537 -11.91290 -11.44750 -11.26440 -11.18513 -10.73982 -9.64334 -9.33307 -9.10024 -8.14100 -6.40948 0.43629 0.51529 1.34097 1.36927 1.48671 2.34138 2.83461 3.02607 3.33207 3.38802 3.97671 4.16919 4.19273 4.41599 4.58571 4.63144 4.69453 4.83530 4.98607 5.14750 5.37289 5.51554 5.58214 5.63864 5.88671 6.08070 6.10937 6.61277 6.88883 6.92954 6.98279 7.09713 7.35726 8.80163 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.031970 B = 0.007743 C = 0.007239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.601452 B = 3615.192462 C = 3866.759441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.021 3.979 3 Si 0.961 3.039 4 H -0.274 1.274 5 H -0.274 1.274 6 H -0.279 1.279 7 C -0.558 4.558 8 H 0.044 0.956 9 C 0.244 3.756 10 H 0.007 0.993 11 N -0.840 5.840 12 C -0.062 4.062 13 C -0.105 4.105 14 C -0.142 4.142 15 C 0.090 3.910 16 O -0.497 6.497 17 C -0.129 4.129 18 C 0.131 3.869 19 O -0.591 6.591 20 C -0.106 4.106 21 H 0.269 0.731 22 H 0.345 0.655 23 H 0.319 0.681 24 H 0.123 0.877 25 H 0.150 0.850 26 H 0.406 0.594 27 H 0.083 0.917 28 H 0.069 0.931 29 H 0.400 0.600 30 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.381 -12.501 1.317 14.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.179 4.179 3 Si 0.786 3.214 4 H -0.199 1.199 5 H -0.199 1.199 6 H -0.204 1.204 7 C -0.598 4.598 8 H 0.062 0.938 9 C 0.133 3.867 10 H 0.025 0.975 11 N -0.369 5.369 12 C -0.063 4.063 13 C -0.124 4.124 14 C -0.161 4.161 15 C 0.046 3.954 16 O -0.309 6.309 17 C -0.130 4.130 18 C 0.054 3.946 19 O -0.400 6.400 20 C -0.125 4.125 21 H 0.078 0.922 22 H 0.160 0.840 23 H 0.130 0.870 24 H 0.141 0.859 25 H 0.168 0.832 26 H 0.264 0.736 27 H 0.100 0.900 28 H 0.087 0.913 29 H 0.251 0.749 30 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 7.202 -12.315 1.228 14.319 hybrid contribution 0.299 1.473 0.289 1.531 sum 7.501 -10.841 1.517 13.271 Atomic orbital electron populations 1.69849 1.06922 1.28028 1.50710 1.25765 0.95804 1.02403 0.93913 0.85471 0.78695 0.79279 0.77947 1.19855 1.19889 1.20439 1.22033 0.93196 0.92402 1.52149 0.93767 1.17783 0.89034 0.89289 0.90550 0.97510 1.59497 1.18109 1.55297 1.04028 1.20360 0.96917 0.95350 0.93655 1.20891 0.96538 0.97142 0.97802 1.21501 0.98573 0.97518 0.98465 1.17946 0.93112 0.92996 0.91358 1.84759 1.33888 1.17633 1.94624 1.20265 0.98051 0.98729 0.95906 1.20721 0.94974 0.95384 0.83498 1.86506 1.69642 1.63213 1.20616 1.20692 0.98601 0.95822 0.97403 0.92198 0.84032 0.87021 0.85909 0.83188 0.73593 0.89961 0.91279 0.74939 0.87214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.93 11.55 21.45 0.25 -51.69 16 2 C 0.02 1.18 5.38 84.65 0.46 1.64 16 3 Si 0.96 43.99 29.54 68.60 2.03 46.02 16 4 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 5 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 6 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 7 C -0.56 -31.52 8.70 25.60 0.22 -31.29 16 8 H 0.04 2.55 7.74 -2.91 -0.02 2.52 16 9 C 0.24 12.97 2.95 43.42 0.13 13.10 16 10 H 0.01 0.41 8.00 -2.39 -0.02 0.40 16 11 N -0.84 -41.77 9.01 -174.94 -1.58 -43.35 16 12 C -0.06 -2.87 4.90 -19.85 -0.10 -2.97 16 13 C -0.11 -4.19 9.29 22.26 0.21 -3.98 16 14 C -0.14 -4.65 9.99 22.37 0.22 -4.43 16 15 C 0.09 2.81 6.68 22.51 0.15 2.96 16 16 O -0.50 -11.56 12.93 -92.47 -1.20 -12.76 16 17 C -0.13 -4.45 5.89 -19.77 -0.12 -4.57 16 18 C 0.13 3.39 6.91 71.24 0.49 3.88 16 19 O -0.59 -16.32 12.14 -148.98 -1.81 -18.13 16 20 C -0.11 -4.58 8.99 22.25 0.20 -4.38 16 21 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 22 H 0.35 18.32 7.09 -89.70 -0.64 17.69 16 23 H 0.32 14.76 7.33 -89.69 -0.66 14.10 16 24 H 0.12 4.73 6.65 -2.91 -0.02 4.71 16 25 H 0.15 3.91 8.06 -2.91 -0.02 3.89 16 26 H 0.41 5.10 9.06 -74.06 -0.67 4.43 16 27 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.40 6.16 9.12 -74.06 -0.68 5.48 16 30 H 0.11 5.06 6.98 -2.91 -0.02 5.04 16 Total: -1.00 -67.99 260.78 -1.88 -69.87 By element: Atomic # 1 Polarization: 41.52 SS G_CDS: -1.43 Total: 40.08 kcal Atomic # 6 Polarization: -31.91 SS G_CDS: 1.87 Total: -30.05 kcal Atomic # 7 Polarization: -93.71 SS G_CDS: -1.33 Total: -95.04 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -3.00 Total: -30.88 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -67.99 -1.88 -69.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238593963.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.138 kcal (2) G-P(sol) polarization free energy of solvation -67.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds