Wall clock time and date at job start Mon Mar 30 2020 02:50:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31512 * 1
3 3 Si 1.86794 * 120.00091 * 2 1
4 4 H 1.48501 * 109.47057 * 0.02562 * 3 2 1
5 5 H 1.48498 * 109.47484 * 239.99864 * 3 2 1
6 6 H 1.48505 * 109.47029 * 119.99720 * 3 2 1
7 7 C 1.37879 * 120.00085 * 179.97438 * 2 1 3
8 8 H 1.08009 * 119.99783 * 343.61596 * 7 2 1
9 9 C 1.50698 * 120.00197 * 163.61494 * 7 2 1
10 10 H 1.09001 * 109.47082 * 54.41193 * 9 7 2
11 11 N 1.46899 * 109.46941 * 294.40952 * 9 7 2
12 12 C 1.50701 * 109.47344 * 174.40955 * 9 7 2
13 13 C 1.38289 * 119.94406 * 79.99532 * 12 9 7
14 14 C 1.38126 * 120.05379 * 180.02562 * 13 12 9
15 15 C 1.38752 * 119.94350 * 359.97438 * 14 13 12
16 16 O 1.35907 * 120.05359 * 180.02562 * 15 14 13
17 17 C 1.38712 * 119.89192 * 0.02562 * 15 14 13
18 18 C 1.50698 * 120.02960 * 179.97438 * 17 15 14
19 19 O 1.42892 * 109.47119 * 179.97438 * 18 17 15
20 20 C 1.38164 * 119.93968 * 359.73981 * 17 15 14
21 21 H 0.97004 * 119.99806 * 174.63099 * 1 2 3
22 22 H 1.00902 * 110.99957 * 305.80676 * 11 9 7
23 23 H 1.00896 * 111.00277 * 69.76638 * 11 9 7
24 24 H 1.07998 * 119.97378 * 0.02562 * 13 12 9
25 25 H 1.07993 * 120.02623 * 179.97438 * 14 13 12
26 26 H 0.96692 * 113.99738 * 90.00620 * 16 15 14
27 27 H 1.08997 * 109.47224 * 299.99380 * 18 17 15
28 28 H 1.09000 * 109.47293 * 59.99808 * 18 17 15
29 29 H 0.96704 * 114.00076 * 180.02562 * 19 18 17
30 30 H 1.08007 * 119.97037 * 180.27578 * 20 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 1.2841 2.7464 0.0006
5 1 3.1029 1.6964 -1.2124
6 1 3.1028 1.6963 1.2126
7 6 2.0045 -1.1941 0.0005
8 1 1.4974 -2.1103 0.2648
9 6 3.4656 -1.2208 -0.3676
10 1 4.0115 -0.5170 0.2608
11 7 3.6222 -0.8413 -1.7781
12 6 4.0114 -2.6097 -0.1575
13 6 3.7890 -3.5897 -1.1074
14 6 4.2877 -4.8636 -0.9169
15 6 5.0127 -5.1594 0.2286
16 8 5.5049 -6.4120 0.4181
17 6 5.2344 -4.1746 1.1799
18 6 6.0209 -4.4926 2.4254
19 8 6.1122 -3.3238 3.2425
20 6 4.7376 -2.9006 0.9823
21 1 -0.4850 -0.8364 -0.0786
22 1 3.0498 -1.4205 -2.3740
23 1 3.4131 0.1362 -1.9150
24 1 3.2250 -3.3589 -1.9990
25 1 4.1135 -5.6288 -1.6588
26 1 6.3935 -6.5436 0.0603
27 1 5.5187 -5.2854 2.9798
28 1 7.0227 -4.8211 2.1486
29 1 6.6068 -3.4552 4.0630
30 1 4.9137 -2.1323 1.7207
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000238620968.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:50:19
Heat of formation + Delta-G solvation = -72.550274 kcal
Electronic energy + Delta-G solvation = -15034.856103 eV
Core-core repulsion = 12408.930743 eV
Total energy + Delta-G solvation = -2625.925360 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 223.100 amu
Computer time = 0.21 seconds
Orbital eigenvalues (eV)
-39.57753 -36.83759 -36.63406 -34.28373 -31.83767 -30.98643 -29.13915 -25.69085
-25.60525 -22.56092 -21.55580 -19.45436 -18.16270 -17.67285 -17.12518 -15.83182
-15.28891 -14.86543 -14.47595 -14.26724 -13.82773 -13.36640 -13.03436 -12.69517
-12.39261 -12.07590 -11.69050 -11.41890 -11.23294 -10.62710 -10.19479 -10.16967
-10.09561 -9.94353 -9.29258 -8.53178 -8.27955 -7.92145 -7.53462 -6.49432
-4.24511 1.78918 1.90889 3.25798 3.36826 3.52594 4.17890 4.29815
4.36662 4.55506 5.10708 5.18763 5.34159 5.45072 5.56383 5.71487
6.02623 6.09944 6.22465 6.32888 6.47689 6.79351 6.91008 7.02722
7.30998 7.47664 7.71955 7.79418 7.93131 8.20415 8.37116 8.49862
8.81185 9.46440 10.78996
Molecular weight = 223.10amu
Principal moments of inertia in cm(-1)
A = 0.033258 B = 0.008328 C = 0.007428
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 841.706302 B = 3361.265851 C = 3768.660115
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.897 5.897
2 C 0.033 3.967
3 Si 1.043 2.957
4 H -0.283 1.283
5 H -0.274 1.274
6 H -0.281 1.281
7 C -0.624 4.624
8 H 0.058 0.942
9 C 0.210 3.790
10 H 0.044 0.956
11 N -0.857 5.857
12 C -0.023 4.023
13 C -0.093 4.093
14 C -0.146 4.146
15 C 0.074 3.926
16 O -0.501 6.501
17 C -0.122 4.122
18 C 0.130 3.870
19 O -0.566 6.566
20 C -0.087 4.087
21 H 0.270 0.730
22 H 0.327 0.673
23 H 0.329 0.671
24 H 0.122 0.878
25 H 0.120 0.880
26 H 0.378 0.622
27 H 0.057 0.943
28 H 0.050 0.950
29 H 0.377 0.623
30 H 0.131 0.869
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.480 -7.758 1.151 14.740
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.530 5.530
2 C -0.173 4.173
3 Si 0.871 3.129
4 H -0.209 1.209
5 H -0.201 1.201
6 H -0.207 1.207
7 C -0.664 4.664
8 H 0.076 0.924
9 C 0.101 3.899
10 H 0.062 0.938
11 N -0.388 5.388
12 C -0.023 4.023
13 C -0.111 4.111
14 C -0.164 4.164
15 C 0.030 3.970
16 O -0.309 6.309
17 C -0.123 4.123
18 C 0.053 3.947
19 O -0.370 6.370
20 C -0.106 4.106
21 H 0.080 0.920
22 H 0.139 0.861
23 H 0.144 0.856
24 H 0.140 0.860
25 H 0.138 0.862
26 H 0.232 0.768
27 H 0.075 0.925
28 H 0.068 0.932
29 H 0.224 0.776
30 H 0.149 0.851
Dipole moment (debyes) X Y Z Total
from point charges 12.137 -6.150 1.116 13.652
hybrid contribution -0.205 -1.810 0.272 1.842
sum 11.933 -7.961 1.387 14.411
Atomic orbital electron populations
1.70821 1.07012 1.30673 1.44511 1.25845 0.96222 1.02407 0.92864
0.84023 0.75374 0.76093 0.77404 1.20901 1.20108 1.20666 1.22599
0.94178 0.96739 1.52861 0.92391 1.18303 0.95300 0.88932 0.87398
0.93846 1.59755 1.62486 1.08375 1.08212 1.20203 0.92541 0.97170
0.92427 1.20829 0.99090 0.91676 0.99516 1.21219 1.01113 0.97148
0.96951 1.17974 1.00939 0.83510 0.94576 1.84830 1.35933 1.28079
1.82106 1.19847 1.02193 0.94098 0.96153 1.20625 0.97463 0.86960
0.89699 1.86536 1.78680 1.35741 1.36091 1.20763 0.96786 0.95638
0.97410 0.91999 0.86141 0.85634 0.85975 0.86197 0.76830 0.92502
0.93154 0.77633 0.85122
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.07 13.69 55.43 0.76 -26.31 16
2 C 0.03 0.94 5.43 -17.82 -0.10 0.84 16
3 Si 1.04 24.48 26.54 -169.99 -4.51 19.97 16
4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16
5 H -0.27 -5.82 5.55 56.52 0.31 -5.51 16
6 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16
7 C -0.62 -17.36 8.95 -34.44 -0.31 -17.67 16
8 H 0.06 1.78 7.99 -52.48 -0.42 1.36 16
9 C 0.21 5.05 2.48 -70.02 -0.17 4.88 16
10 H 0.04 1.07 6.67 -51.93 -0.35 0.72 16
11 N -0.86 -18.82 8.94 -6.65 -0.06 -18.88 16
12 C -0.02 -0.50 4.90 -104.60 -0.51 -1.01 16
13 C -0.09 -1.85 9.30 -39.60 -0.37 -2.22 16
14 C -0.15 -2.55 9.99 -39.43 -0.39 -2.95 16
15 C 0.07 1.25 6.68 -39.22 -0.26 0.99 16
16 O -0.50 -6.94 12.93 -19.45 -0.25 -7.19 16
17 C -0.12 -2.19 5.89 -104.47 -0.62 -2.80 16
18 C 0.13 1.82 6.91 36.00 0.25 2.07 16
19 O -0.57 -8.00 12.14 -35.23 -0.43 -8.42 16
20 C -0.09 -1.81 8.99 -39.61 -0.36 -2.17 16
21 H 0.27 8.18 8.73 -40.82 -0.36 7.82 16
22 H 0.33 6.94 7.54 -39.29 -0.30 6.64 16
23 H 0.33 7.22 5.70 -39.29 -0.22 6.99 16
24 H 0.12 2.35 6.79 -52.49 -0.36 2.00 16
25 H 0.12 1.80 8.06 -52.49 -0.42 1.37 16
26 H 0.38 3.30 9.06 45.56 0.41 3.71 16
27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16
28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16
29 H 0.38 3.15 9.12 45.56 0.42 3.56 16
30 H 0.13 2.76 6.98 -52.48 -0.37 2.39 16
LS Contribution 256.44 15.07 3.86 3.86
Total: -1.00 -32.62 256.44 -5.15 -37.77
By element:
Atomic # 1 Polarization: 20.92 SS G_CDS: -1.69 Total: 19.23 kcal
Atomic # 6 Polarization: -17.19 SS G_CDS: -2.84 Total: -20.03 kcal
Atomic # 7 Polarization: -45.90 SS G_CDS: 0.70 Total: -45.20 kcal
Atomic # 8 Polarization: -14.94 SS G_CDS: -0.68 Total: -15.61 kcal
Atomic # 14 Polarization: 24.48 SS G_CDS: -4.51 Total: 19.97 kcal
Total LS contribution 3.86 Total: 3.86 kcal
Total: -32.62 -5.15 -37.77 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000238620968.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -34.776 kcal
(2) G-P(sol) polarization free energy of solvation -32.622 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.398 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.152 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.774 kcal
(6) G-S(sol) free energy of system = (1) + (5) -72.550 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.21 seconds