Wall clock time and date at job start Mon Mar 30 2020 02:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 120.00091 * 2 1 4 4 H 1.48501 * 109.47057 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47484 * 239.99864 * 3 2 1 6 6 H 1.48505 * 109.47029 * 119.99720 * 3 2 1 7 7 C 1.37879 * 120.00085 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99783 * 343.61596 * 7 2 1 9 9 C 1.50698 * 120.00197 * 163.61494 * 7 2 1 10 10 H 1.09001 * 109.47082 * 54.41193 * 9 7 2 11 11 N 1.46899 * 109.46941 * 294.40952 * 9 7 2 12 12 C 1.50701 * 109.47344 * 174.40955 * 9 7 2 13 13 C 1.38289 * 119.94406 * 79.99532 * 12 9 7 14 14 C 1.38126 * 120.05379 * 180.02562 * 13 12 9 15 15 C 1.38752 * 119.94350 * 359.97438 * 14 13 12 16 16 O 1.35907 * 120.05359 * 180.02562 * 15 14 13 17 17 C 1.38712 * 119.89192 * 0.02562 * 15 14 13 18 18 C 1.50698 * 120.02960 * 179.97438 * 17 15 14 19 19 O 1.42892 * 109.47119 * 179.97438 * 18 17 15 20 20 C 1.38164 * 119.93968 * 359.73981 * 17 15 14 21 21 H 0.97004 * 119.99806 * 174.63099 * 1 2 3 22 22 H 1.00902 * 110.99957 * 305.80676 * 11 9 7 23 23 H 1.00896 * 111.00277 * 69.76638 * 11 9 7 24 24 H 1.07998 * 119.97378 * 0.02562 * 13 12 9 25 25 H 1.07993 * 120.02623 * 179.97438 * 14 13 12 26 26 H 0.96692 * 113.99738 * 90.00620 * 16 15 14 27 27 H 1.08997 * 109.47224 * 299.99380 * 18 17 15 28 28 H 1.09000 * 109.47293 * 59.99808 * 18 17 15 29 29 H 0.96704 * 114.00076 * 180.02562 * 19 18 17 30 30 H 1.08007 * 119.97037 * 180.27578 * 20 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 0.0006 5 1 3.1029 1.6964 -1.2124 6 1 3.1028 1.6963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 1.4974 -2.1103 0.2648 9 6 3.4656 -1.2208 -0.3676 10 1 4.0115 -0.5170 0.2608 11 7 3.6222 -0.8413 -1.7781 12 6 4.0114 -2.6097 -0.1575 13 6 3.7890 -3.5897 -1.1074 14 6 4.2877 -4.8636 -0.9169 15 6 5.0127 -5.1594 0.2286 16 8 5.5049 -6.4120 0.4181 17 6 5.2344 -4.1746 1.1799 18 6 6.0209 -4.4926 2.4254 19 8 6.1122 -3.3238 3.2425 20 6 4.7376 -2.9006 0.9823 21 1 -0.4850 -0.8364 -0.0786 22 1 3.0498 -1.4205 -2.3740 23 1 3.4131 0.1362 -1.9150 24 1 3.2250 -3.3589 -1.9990 25 1 4.1135 -5.6288 -1.6588 26 1 6.3935 -6.5436 0.0603 27 1 5.5187 -5.2854 2.9798 28 1 7.0227 -4.8211 2.1486 29 1 6.6068 -3.4552 4.0630 30 1 4.9137 -2.1323 1.7207 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238620968.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:19 Heat of formation + Delta-G solvation = -72.550274 kcal Electronic energy + Delta-G solvation = -15034.856103 eV Core-core repulsion = 12408.930743 eV Total energy + Delta-G solvation = -2625.925360 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.57753 -36.83759 -36.63406 -34.28373 -31.83767 -30.98643 -29.13915 -25.69085 -25.60525 -22.56092 -21.55580 -19.45436 -18.16270 -17.67285 -17.12518 -15.83182 -15.28891 -14.86543 -14.47595 -14.26724 -13.82773 -13.36640 -13.03436 -12.69517 -12.39261 -12.07590 -11.69050 -11.41890 -11.23294 -10.62710 -10.19479 -10.16967 -10.09561 -9.94353 -9.29258 -8.53178 -8.27955 -7.92145 -7.53462 -6.49432 -4.24511 1.78918 1.90889 3.25798 3.36826 3.52594 4.17890 4.29815 4.36662 4.55506 5.10708 5.18763 5.34159 5.45072 5.56383 5.71487 6.02623 6.09944 6.22465 6.32888 6.47689 6.79351 6.91008 7.02722 7.30998 7.47664 7.71955 7.79418 7.93131 8.20415 8.37116 8.49862 8.81185 9.46440 10.78996 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.033258 B = 0.008328 C = 0.007428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.706302 B = 3361.265851 C = 3768.660115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.033 3.967 3 Si 1.043 2.957 4 H -0.283 1.283 5 H -0.274 1.274 6 H -0.281 1.281 7 C -0.624 4.624 8 H 0.058 0.942 9 C 0.210 3.790 10 H 0.044 0.956 11 N -0.857 5.857 12 C -0.023 4.023 13 C -0.093 4.093 14 C -0.146 4.146 15 C 0.074 3.926 16 O -0.501 6.501 17 C -0.122 4.122 18 C 0.130 3.870 19 O -0.566 6.566 20 C -0.087 4.087 21 H 0.270 0.730 22 H 0.327 0.673 23 H 0.329 0.671 24 H 0.122 0.878 25 H 0.120 0.880 26 H 0.378 0.622 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.377 0.623 30 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.480 -7.758 1.151 14.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.173 4.173 3 Si 0.871 3.129 4 H -0.209 1.209 5 H -0.201 1.201 6 H -0.207 1.207 7 C -0.664 4.664 8 H 0.076 0.924 9 C 0.101 3.899 10 H 0.062 0.938 11 N -0.388 5.388 12 C -0.023 4.023 13 C -0.111 4.111 14 C -0.164 4.164 15 C 0.030 3.970 16 O -0.309 6.309 17 C -0.123 4.123 18 C 0.053 3.947 19 O -0.370 6.370 20 C -0.106 4.106 21 H 0.080 0.920 22 H 0.139 0.861 23 H 0.144 0.856 24 H 0.140 0.860 25 H 0.138 0.862 26 H 0.232 0.768 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.224 0.776 30 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 12.137 -6.150 1.116 13.652 hybrid contribution -0.205 -1.810 0.272 1.842 sum 11.933 -7.961 1.387 14.411 Atomic orbital electron populations 1.70821 1.07012 1.30673 1.44511 1.25845 0.96222 1.02407 0.92864 0.84023 0.75374 0.76093 0.77404 1.20901 1.20108 1.20666 1.22599 0.94178 0.96739 1.52861 0.92391 1.18303 0.95300 0.88932 0.87398 0.93846 1.59755 1.62486 1.08375 1.08212 1.20203 0.92541 0.97170 0.92427 1.20829 0.99090 0.91676 0.99516 1.21219 1.01113 0.97148 0.96951 1.17974 1.00939 0.83510 0.94576 1.84830 1.35933 1.28079 1.82106 1.19847 1.02193 0.94098 0.96153 1.20625 0.97463 0.86960 0.89699 1.86536 1.78680 1.35741 1.36091 1.20763 0.96786 0.95638 0.97410 0.91999 0.86141 0.85634 0.85975 0.86197 0.76830 0.92502 0.93154 0.77633 0.85122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.07 13.69 55.43 0.76 -26.31 16 2 C 0.03 0.94 5.43 -17.82 -0.10 0.84 16 3 Si 1.04 24.48 26.54 -169.99 -4.51 19.97 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.27 -5.82 5.55 56.52 0.31 -5.51 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 7 C -0.62 -17.36 8.95 -34.44 -0.31 -17.67 16 8 H 0.06 1.78 7.99 -52.48 -0.42 1.36 16 9 C 0.21 5.05 2.48 -70.02 -0.17 4.88 16 10 H 0.04 1.07 6.67 -51.93 -0.35 0.72 16 11 N -0.86 -18.82 8.94 -6.65 -0.06 -18.88 16 12 C -0.02 -0.50 4.90 -104.60 -0.51 -1.01 16 13 C -0.09 -1.85 9.30 -39.60 -0.37 -2.22 16 14 C -0.15 -2.55 9.99 -39.43 -0.39 -2.95 16 15 C 0.07 1.25 6.68 -39.22 -0.26 0.99 16 16 O -0.50 -6.94 12.93 -19.45 -0.25 -7.19 16 17 C -0.12 -2.19 5.89 -104.47 -0.62 -2.80 16 18 C 0.13 1.82 6.91 36.00 0.25 2.07 16 19 O -0.57 -8.00 12.14 -35.23 -0.43 -8.42 16 20 C -0.09 -1.81 8.99 -39.61 -0.36 -2.17 16 21 H 0.27 8.18 8.73 -40.82 -0.36 7.82 16 22 H 0.33 6.94 7.54 -39.29 -0.30 6.64 16 23 H 0.33 7.22 5.70 -39.29 -0.22 6.99 16 24 H 0.12 2.35 6.79 -52.49 -0.36 2.00 16 25 H 0.12 1.80 8.06 -52.49 -0.42 1.37 16 26 H 0.38 3.30 9.06 45.56 0.41 3.71 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.38 3.15 9.12 45.56 0.42 3.56 16 30 H 0.13 2.76 6.98 -52.48 -0.37 2.39 16 LS Contribution 256.44 15.07 3.86 3.86 Total: -1.00 -32.62 256.44 -5.15 -37.77 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: -1.69 Total: 19.23 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: -2.84 Total: -20.03 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: 0.70 Total: -45.20 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -0.68 Total: -15.61 kcal Atomic # 14 Polarization: 24.48 SS G_CDS: -4.51 Total: 19.97 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -32.62 -5.15 -37.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238620968.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.776 kcal (2) G-P(sol) polarization free energy of solvation -32.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds