Wall clock time and date at job start Mon Mar 30 2020 02:50:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31512 * 1
3 3 Si 1.86794 * 120.00091 * 2 1
4 4 H 1.48501 * 109.47057 * 0.02562 * 3 2 1
5 5 H 1.48498 * 109.47484 * 239.99864 * 3 2 1
6 6 H 1.48505 * 109.47029 * 119.99720 * 3 2 1
7 7 C 1.37879 * 120.00085 * 179.97438 * 2 1 3
8 8 H 1.08009 * 119.99783 * 343.61596 * 7 2 1
9 9 C 1.50698 * 120.00197 * 163.61494 * 7 2 1
10 10 H 1.09001 * 109.47082 * 54.41193 * 9 7 2
11 11 N 1.46899 * 109.46941 * 294.40952 * 9 7 2
12 12 C 1.50701 * 109.47344 * 174.40955 * 9 7 2
13 13 C 1.38289 * 119.94406 * 79.99532 * 12 9 7
14 14 C 1.38126 * 120.05379 * 180.02562 * 13 12 9
15 15 C 1.38752 * 119.94350 * 359.97438 * 14 13 12
16 16 O 1.35907 * 120.05359 * 180.02562 * 15 14 13
17 17 C 1.38712 * 119.89192 * 0.02562 * 15 14 13
18 18 C 1.50698 * 120.02960 * 179.97438 * 17 15 14
19 19 O 1.42892 * 109.47119 * 179.97438 * 18 17 15
20 20 C 1.38164 * 119.93968 * 359.73981 * 17 15 14
21 21 H 0.97004 * 119.99806 * 174.63099 * 1 2 3
22 22 H 1.00902 * 110.99957 * 305.80676 * 11 9 7
23 23 H 1.00896 * 111.00277 * 69.76638 * 11 9 7
24 24 H 1.07998 * 119.97378 * 0.02562 * 13 12 9
25 25 H 1.07993 * 120.02623 * 179.97438 * 14 13 12
26 26 H 0.96692 * 113.99738 * 90.00620 * 16 15 14
27 27 H 1.08997 * 109.47224 * 299.99380 * 18 17 15
28 28 H 1.09000 * 109.47293 * 59.99808 * 18 17 15
29 29 H 0.96704 * 114.00076 * 180.02562 * 19 18 17
30 30 H 1.08007 * 119.97037 * 180.27578 * 20 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 1.2841 2.7464 0.0006
5 1 3.1029 1.6964 -1.2124
6 1 3.1028 1.6963 1.2126
7 6 2.0045 -1.1941 0.0005
8 1 1.4974 -2.1103 0.2648
9 6 3.4656 -1.2208 -0.3676
10 1 4.0115 -0.5170 0.2608
11 7 3.6222 -0.8413 -1.7781
12 6 4.0114 -2.6097 -0.1575
13 6 3.7890 -3.5897 -1.1074
14 6 4.2877 -4.8636 -0.9169
15 6 5.0127 -5.1594 0.2286
16 8 5.5049 -6.4120 0.4181
17 6 5.2344 -4.1746 1.1799
18 6 6.0209 -4.4926 2.4254
19 8 6.1122 -3.3238 3.2425
20 6 4.7376 -2.9006 0.9823
21 1 -0.4850 -0.8364 -0.0786
22 1 3.0498 -1.4205 -2.3740
23 1 3.4131 0.1362 -1.9150
24 1 3.2250 -3.3589 -1.9990
25 1 4.1135 -5.6288 -1.6588
26 1 6.3935 -6.5436 0.0603
27 1 5.5187 -5.2854 2.9798
28 1 7.0227 -4.8211 2.1486
29 1 6.6068 -3.4552 4.0630
30 1 4.9137 -2.1323 1.7207
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000238620968.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:50:19
Heat of formation + Delta-G solvation = -101.565997 kcal
Electronic energy + Delta-G solvation = -15036.114319 eV
Core-core repulsion = 12408.930743 eV
Total energy + Delta-G solvation = -2627.183576 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 223.100 amu
Computer time = 0.22 seconds
Orbital eigenvalues (eV)
-40.94365 -38.24928 -37.74229 -36.02243 -33.86824 -32.36880 -30.65815 -27.66555
-26.87338 -24.27185 -23.01654 -21.05651 -19.84125 -19.33352 -18.28218 -17.45726
-16.61788 -16.20545 -15.80999 -15.62454 -15.48876 -14.99560 -14.67652 -14.36923
-14.34752 -13.69600 -13.04864 -12.92198 -12.71461 -12.28662 -11.99584 -11.81081
-11.36103 -11.31260 -11.21506 -10.70055 -9.73247 -9.53721 -9.33389 -8.66422
-6.51249 0.37133 0.44901 1.38892 1.47552 1.68039 2.39572 2.75431
2.95081 3.28500 3.33380 3.88291 4.01290 4.11971 4.34951 4.40586
4.55760 4.57453 4.71802 4.79846 5.06384 5.20679 5.43952 5.52240
5.63346 5.89747 5.90338 5.99981 6.36727 6.50836 6.78740 6.88572
6.95416 7.28365 8.51089
Molecular weight = 223.10amu
Principal moments of inertia in cm(-1)
A = 0.033258 B = 0.008328 C = 0.007428
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 841.706302 B = 3361.265851 C = 3768.660115
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.928 5.928
2 C -0.015 4.015
3 Si 1.084 2.916
4 H -0.286 1.286
5 H -0.237 1.237
6 H -0.270 1.270
7 C -0.624 4.624
8 H 0.013 0.987
9 C 0.216 3.784
10 H 0.038 0.962
11 N -0.843 5.843
12 C -0.059 4.059
13 C -0.106 4.106
14 C -0.145 4.145
15 C 0.092 3.908
16 O -0.497 6.497
17 C -0.129 4.129
18 C 0.132 3.868
19 O -0.590 6.590
20 C -0.106 4.106
21 H 0.253 0.747
22 H 0.331 0.669
23 H 0.330 0.670
24 H 0.120 0.880
25 H 0.148 0.852
26 H 0.407 0.593
27 H 0.067 0.933
28 H 0.085 0.915
29 H 0.401 0.599
30 H 0.117 0.883
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 14.960 -8.731 1.044 17.352
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.563 5.563
2 C -0.215 4.215
3 Si 0.905 3.095
4 H -0.211 1.211
5 H -0.161 1.161
6 H -0.196 1.196
7 C -0.663 4.663
8 H 0.031 0.969
9 C 0.106 3.894
10 H 0.056 0.944
11 N -0.373 5.373
12 C -0.060 4.060
13 C -0.125 4.125
14 C -0.164 4.164
15 C 0.047 3.953
16 O -0.309 6.309
17 C -0.130 4.130
18 C 0.055 3.945
19 O -0.399 6.399
20 C -0.125 4.125
21 H 0.062 0.938
22 H 0.143 0.857
23 H 0.145 0.855
24 H 0.138 0.862
25 H 0.166 0.834
26 H 0.265 0.735
27 H 0.085 0.915
28 H 0.103 0.897
29 H 0.252 0.748
30 H 0.135 0.865
Dipole moment (debyes) X Y Z Total
from point charges 14.663 -7.163 1.006 16.350
hybrid contribution -0.930 -1.719 0.358 1.987
sum 13.733 -8.883 1.364 16.412
Atomic orbital electron populations
1.70950 1.08256 1.29683 1.47384 1.27290 0.96138 1.06194 0.91833
0.83530 0.74798 0.71716 0.79455 1.21150 1.16136 1.19573 1.22725
0.96475 0.94935 1.52168 0.96902 1.18121 0.92560 0.90704 0.88012
0.94385 1.59693 1.62180 1.08460 1.07012 1.20131 0.94957 0.96619
0.94257 1.20878 0.99749 0.92621 0.99233 1.21499 1.00295 0.96646
0.97923 1.17963 0.99655 0.84150 0.93521 1.84764 1.38032 1.25866
1.82285 1.20280 1.01691 0.93067 0.97925 1.20705 0.98653 0.86926
0.88252 1.86484 1.79532 1.36227 1.37644 1.20737 0.97856 0.97004
0.96855 0.93767 0.85690 0.85538 0.86229 0.83418 0.73492 0.91523
0.89744 0.74842 0.86457
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -57.87 13.69 21.45 0.29 -57.58 16
2 C -0.01 -0.86 5.43 84.66 0.46 -0.40 16
3 Si 1.08 49.16 26.54 68.60 1.82 50.98 16
4 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16
5 H -0.24 -9.25 5.55 99.48 0.55 -8.69 16
6 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16
7 C -0.62 -35.85 8.95 25.60 0.23 -35.62 16
8 H 0.01 0.82 7.99 -2.91 -0.02 0.80 16
9 C 0.22 10.50 2.48 43.42 0.11 10.61 16
10 H 0.04 1.88 6.67 -2.39 -0.02 1.86 16
11 N -0.84 -36.48 8.94 -174.95 -1.56 -38.05 16
12 C -0.06 -2.62 4.90 -19.85 -0.10 -2.72 16
13 C -0.11 -4.21 9.30 22.26 0.21 -4.00 16
14 C -0.15 -4.78 9.99 22.37 0.22 -4.56 16
15 C 0.09 2.83 6.68 22.51 0.15 2.98 16
16 O -0.50 -11.56 12.93 -92.50 -1.20 -12.76 16
17 C -0.13 -4.35 5.89 -19.77 -0.12 -4.47 16
18 C 0.13 3.29 6.91 71.24 0.49 3.78 16
19 O -0.59 -15.47 12.14 -148.98 -1.81 -17.28 16
20 C -0.11 -4.37 8.99 22.25 0.20 -4.17 16
21 H 0.25 16.16 8.73 -92.71 -0.81 15.35 16
22 H 0.33 14.00 7.54 -89.69 -0.68 13.33 16
23 H 0.33 13.95 5.70 -89.70 -0.51 13.44 16
24 H 0.12 4.64 6.79 -2.91 -0.02 4.62 16
25 H 0.15 3.95 8.06 -2.91 -0.02 3.93 16
26 H 0.41 4.97 9.06 -74.06 -0.67 4.30 16
27 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16
28 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16
29 H 0.40 5.68 9.12 -74.05 -0.68 5.01 16
30 H 0.12 5.04 6.98 -2.91 -0.02 5.02 16
Total: -1.00 -72.51 256.44 -2.12 -74.63
By element:
Atomic # 1 Polarization: 40.14 SS G_CDS: -1.52 Total: 38.62 kcal
Atomic # 6 Polarization: -40.42 SS G_CDS: 1.86 Total: -38.57 kcal
Atomic # 7 Polarization: -94.36 SS G_CDS: -1.27 Total: -95.63 kcal
Atomic # 8 Polarization: -27.03 SS G_CDS: -3.00 Total: -30.03 kcal
Atomic # 14 Polarization: 49.16 SS G_CDS: 1.82 Total: 50.98 kcal
Total: -72.51 -2.12 -74.63 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000238620968.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -26.937 kcal
(2) G-P(sol) polarization free energy of solvation -72.513 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.449 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.117 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.629 kcal
(6) G-S(sol) free energy of system = (1) + (5) -101.566 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.22 seconds