Wall clock time and date at job start Mon Mar 30 2020 02:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 120.00091 * 2 1 4 4 H 1.48501 * 109.47057 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47484 * 239.99864 * 3 2 1 6 6 H 1.48505 * 109.47029 * 119.99720 * 3 2 1 7 7 C 1.37879 * 120.00085 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99783 * 343.61596 * 7 2 1 9 9 C 1.50698 * 120.00197 * 163.61494 * 7 2 1 10 10 H 1.09001 * 109.47082 * 54.41193 * 9 7 2 11 11 N 1.46899 * 109.46941 * 294.40952 * 9 7 2 12 12 C 1.50701 * 109.47344 * 174.40955 * 9 7 2 13 13 C 1.38289 * 119.94406 * 79.99532 * 12 9 7 14 14 C 1.38126 * 120.05379 * 180.02562 * 13 12 9 15 15 C 1.38752 * 119.94350 * 359.97438 * 14 13 12 16 16 O 1.35907 * 120.05359 * 180.02562 * 15 14 13 17 17 C 1.38712 * 119.89192 * 0.02562 * 15 14 13 18 18 C 1.50698 * 120.02960 * 179.97438 * 17 15 14 19 19 O 1.42892 * 109.47119 * 179.97438 * 18 17 15 20 20 C 1.38164 * 119.93968 * 359.73981 * 17 15 14 21 21 H 0.97004 * 119.99806 * 174.63099 * 1 2 3 22 22 H 1.00902 * 110.99957 * 305.80676 * 11 9 7 23 23 H 1.00896 * 111.00277 * 69.76638 * 11 9 7 24 24 H 1.07998 * 119.97378 * 0.02562 * 13 12 9 25 25 H 1.07993 * 120.02623 * 179.97438 * 14 13 12 26 26 H 0.96692 * 113.99738 * 90.00620 * 16 15 14 27 27 H 1.08997 * 109.47224 * 299.99380 * 18 17 15 28 28 H 1.09000 * 109.47293 * 59.99808 * 18 17 15 29 29 H 0.96704 * 114.00076 * 180.02562 * 19 18 17 30 30 H 1.08007 * 119.97037 * 180.27578 * 20 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 0.0006 5 1 3.1029 1.6964 -1.2124 6 1 3.1028 1.6963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 1.4974 -2.1103 0.2648 9 6 3.4656 -1.2208 -0.3676 10 1 4.0115 -0.5170 0.2608 11 7 3.6222 -0.8413 -1.7781 12 6 4.0114 -2.6097 -0.1575 13 6 3.7890 -3.5897 -1.1074 14 6 4.2877 -4.8636 -0.9169 15 6 5.0127 -5.1594 0.2286 16 8 5.5049 -6.4120 0.4181 17 6 5.2344 -4.1746 1.1799 18 6 6.0209 -4.4926 2.4254 19 8 6.1122 -3.3238 3.2425 20 6 4.7376 -2.9006 0.9823 21 1 -0.4850 -0.8364 -0.0786 22 1 3.0498 -1.4205 -2.3740 23 1 3.4131 0.1362 -1.9150 24 1 3.2250 -3.3589 -1.9990 25 1 4.1135 -5.6288 -1.6588 26 1 6.3935 -6.5436 0.0603 27 1 5.5187 -5.2854 2.9798 28 1 7.0227 -4.8211 2.1486 29 1 6.6068 -3.4552 4.0630 30 1 4.9137 -2.1323 1.7207 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238620968.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:19 Heat of formation + Delta-G solvation = -101.565997 kcal Electronic energy + Delta-G solvation = -15036.114319 eV Core-core repulsion = 12408.930743 eV Total energy + Delta-G solvation = -2627.183576 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.94365 -38.24928 -37.74229 -36.02243 -33.86824 -32.36880 -30.65815 -27.66555 -26.87338 -24.27185 -23.01654 -21.05651 -19.84125 -19.33352 -18.28218 -17.45726 -16.61788 -16.20545 -15.80999 -15.62454 -15.48876 -14.99560 -14.67652 -14.36923 -14.34752 -13.69600 -13.04864 -12.92198 -12.71461 -12.28662 -11.99584 -11.81081 -11.36103 -11.31260 -11.21506 -10.70055 -9.73247 -9.53721 -9.33389 -8.66422 -6.51249 0.37133 0.44901 1.38892 1.47552 1.68039 2.39572 2.75431 2.95081 3.28500 3.33380 3.88291 4.01290 4.11971 4.34951 4.40586 4.55760 4.57453 4.71802 4.79846 5.06384 5.20679 5.43952 5.52240 5.63346 5.89747 5.90338 5.99981 6.36727 6.50836 6.78740 6.88572 6.95416 7.28365 8.51089 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.033258 B = 0.008328 C = 0.007428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.706302 B = 3361.265851 C = 3768.660115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.015 4.015 3 Si 1.084 2.916 4 H -0.286 1.286 5 H -0.237 1.237 6 H -0.270 1.270 7 C -0.624 4.624 8 H 0.013 0.987 9 C 0.216 3.784 10 H 0.038 0.962 11 N -0.843 5.843 12 C -0.059 4.059 13 C -0.106 4.106 14 C -0.145 4.145 15 C 0.092 3.908 16 O -0.497 6.497 17 C -0.129 4.129 18 C 0.132 3.868 19 O -0.590 6.590 20 C -0.106 4.106 21 H 0.253 0.747 22 H 0.331 0.669 23 H 0.330 0.670 24 H 0.120 0.880 25 H 0.148 0.852 26 H 0.407 0.593 27 H 0.067 0.933 28 H 0.085 0.915 29 H 0.401 0.599 30 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.960 -8.731 1.044 17.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.215 4.215 3 Si 0.905 3.095 4 H -0.211 1.211 5 H -0.161 1.161 6 H -0.196 1.196 7 C -0.663 4.663 8 H 0.031 0.969 9 C 0.106 3.894 10 H 0.056 0.944 11 N -0.373 5.373 12 C -0.060 4.060 13 C -0.125 4.125 14 C -0.164 4.164 15 C 0.047 3.953 16 O -0.309 6.309 17 C -0.130 4.130 18 C 0.055 3.945 19 O -0.399 6.399 20 C -0.125 4.125 21 H 0.062 0.938 22 H 0.143 0.857 23 H 0.145 0.855 24 H 0.138 0.862 25 H 0.166 0.834 26 H 0.265 0.735 27 H 0.085 0.915 28 H 0.103 0.897 29 H 0.252 0.748 30 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 14.663 -7.163 1.006 16.350 hybrid contribution -0.930 -1.719 0.358 1.987 sum 13.733 -8.883 1.364 16.412 Atomic orbital electron populations 1.70950 1.08256 1.29683 1.47384 1.27290 0.96138 1.06194 0.91833 0.83530 0.74798 0.71716 0.79455 1.21150 1.16136 1.19573 1.22725 0.96475 0.94935 1.52168 0.96902 1.18121 0.92560 0.90704 0.88012 0.94385 1.59693 1.62180 1.08460 1.07012 1.20131 0.94957 0.96619 0.94257 1.20878 0.99749 0.92621 0.99233 1.21499 1.00295 0.96646 0.97923 1.17963 0.99655 0.84150 0.93521 1.84764 1.38032 1.25866 1.82285 1.20280 1.01691 0.93067 0.97925 1.20705 0.98653 0.86926 0.88252 1.86484 1.79532 1.36227 1.37644 1.20737 0.97856 0.97004 0.96855 0.93767 0.85690 0.85538 0.86229 0.83418 0.73492 0.91523 0.89744 0.74842 0.86457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.87 13.69 21.45 0.29 -57.58 16 2 C -0.01 -0.86 5.43 84.66 0.46 -0.40 16 3 Si 1.08 49.16 26.54 68.60 1.82 50.98 16 4 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 5 H -0.24 -9.25 5.55 99.48 0.55 -8.69 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 7 C -0.62 -35.85 8.95 25.60 0.23 -35.62 16 8 H 0.01 0.82 7.99 -2.91 -0.02 0.80 16 9 C 0.22 10.50 2.48 43.42 0.11 10.61 16 10 H 0.04 1.88 6.67 -2.39 -0.02 1.86 16 11 N -0.84 -36.48 8.94 -174.95 -1.56 -38.05 16 12 C -0.06 -2.62 4.90 -19.85 -0.10 -2.72 16 13 C -0.11 -4.21 9.30 22.26 0.21 -4.00 16 14 C -0.15 -4.78 9.99 22.37 0.22 -4.56 16 15 C 0.09 2.83 6.68 22.51 0.15 2.98 16 16 O -0.50 -11.56 12.93 -92.50 -1.20 -12.76 16 17 C -0.13 -4.35 5.89 -19.77 -0.12 -4.47 16 18 C 0.13 3.29 6.91 71.24 0.49 3.78 16 19 O -0.59 -15.47 12.14 -148.98 -1.81 -17.28 16 20 C -0.11 -4.37 8.99 22.25 0.20 -4.17 16 21 H 0.25 16.16 8.73 -92.71 -0.81 15.35 16 22 H 0.33 14.00 7.54 -89.69 -0.68 13.33 16 23 H 0.33 13.95 5.70 -89.70 -0.51 13.44 16 24 H 0.12 4.64 6.79 -2.91 -0.02 4.62 16 25 H 0.15 3.95 8.06 -2.91 -0.02 3.93 16 26 H 0.41 4.97 9.06 -74.06 -0.67 4.30 16 27 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.40 5.68 9.12 -74.05 -0.68 5.01 16 30 H 0.12 5.04 6.98 -2.91 -0.02 5.02 16 Total: -1.00 -72.51 256.44 -2.12 -74.63 By element: Atomic # 1 Polarization: 40.14 SS G_CDS: -1.52 Total: 38.62 kcal Atomic # 6 Polarization: -40.42 SS G_CDS: 1.86 Total: -38.57 kcal Atomic # 7 Polarization: -94.36 SS G_CDS: -1.27 Total: -95.63 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -3.00 Total: -30.03 kcal Atomic # 14 Polarization: 49.16 SS G_CDS: 1.82 Total: 50.98 kcal Total: -72.51 -2.12 -74.63 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238620968.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.937 kcal (2) G-P(sol) polarization free energy of solvation -72.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds