Wall clock time and date at job start Mon Mar 30 2020 02:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00000 * 2 1 4 4 H 1.48504 * 109.47123 * 269.99193 * 3 2 1 5 5 H 1.48503 * 109.47567 * 29.99283 * 3 2 1 6 6 H 1.48501 * 109.47283 * 149.99732 * 3 2 1 7 7 C 1.37878 * 119.99982 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00060 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00094 * 0.02562 * 7 2 1 10 10 H 1.09005 * 109.47170 * 59.99650 * 9 7 2 11 11 N 1.46899 * 109.46853 * 299.99406 * 9 7 2 12 12 C 1.50703 * 109.47144 * 179.97438 * 9 7 2 13 13 C 1.38287 * 119.94627 * 99.97789 * 12 9 7 14 14 C 1.38124 * 120.05411 * 180.02562 * 13 12 9 15 15 C 1.38751 * 119.94703 * 359.96999 * 14 13 12 16 16 O 1.35897 * 120.05679 * 180.02562 * 15 14 13 17 17 C 1.38708 * 119.88687 * 0.02783 * 15 14 13 18 18 C 1.38172 * 119.94643 * 359.97438 * 17 15 14 19 19 C 1.50699 * 119.97045 * 180.25329 * 18 17 15 20 20 O 1.42894 * 109.47556 * 359.72531 * 19 18 17 21 21 H 0.97003 * 120.00236 * 0.02562 * 1 2 3 22 22 H 1.00894 * 110.99874 * 300.00039 * 11 9 7 23 23 H 1.00902 * 110.99987 * 63.95853 * 11 9 7 24 24 H 1.07998 * 119.97064 * 359.97438 * 13 12 9 25 25 H 1.07998 * 120.02559 * 180.02562 * 14 13 12 26 26 H 0.96702 * 114.00173 * 90.00087 * 16 15 14 27 27 H 1.08002 * 120.02845 * 179.97438 * 17 15 14 28 28 H 1.08995 * 109.47056 * 119.72670 * 19 18 17 29 29 H 1.09003 * 109.46812 * 239.72413 * 19 18 17 30 30 H 0.96698 * 114.00693 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6246 -2.5571 -0.8897 11 7 0.4061 -2.5767 1.1997 12 6 2.2303 -3.6446 0.0005 13 6 2.5211 -4.3042 1.1807 14 6 3.4188 -5.3540 1.1833 15 6 4.0284 -5.7470 0.0005 16 8 4.9115 -6.7799 0.0005 17 6 3.7350 -5.0838 -1.1819 18 6 2.8364 -4.0342 -1.1793 19 6 2.5129 -3.3170 -2.4646 20 8 3.2601 -3.8977 -3.5353 21 1 -0.4850 0.8400 -0.0004 22 1 0.9639 -2.5251 2.0389 23 1 -0.3013 -1.8572 1.1908 24 1 2.0466 -3.9977 2.1011 25 1 3.6452 -5.8691 2.1051 26 1 4.5058 -7.6443 -0.1526 27 1 4.2086 -5.3875 -2.1038 28 1 1.4471 -3.4089 -2.6736 29 1 2.7748 -2.2632 -2.3684 30 1 3.1016 -3.4844 -4.3950 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238621144.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:24 Heat of formation + Delta-G solvation = -99.434575 kcal Electronic energy + Delta-G solvation = -15213.887690 eV Core-core repulsion = 12586.796539 eV Total energy + Delta-G solvation = -2627.091151 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.85239 -38.45556 -37.40407 -35.93720 -33.32823 -32.44185 -30.17653 -27.87009 -26.91213 -24.62047 -22.42437 -21.56366 -19.04180 -18.62526 -18.23548 -17.33891 -16.43672 -16.36535 -15.96643 -15.63207 -15.37713 -14.82050 -14.74226 -14.15397 -13.63014 -13.39469 -12.94336 -12.85171 -12.72517 -12.55269 -12.43788 -11.93145 -11.43492 -11.20515 -11.18993 -10.70430 -9.61595 -9.33256 -9.09674 -8.12451 -6.37869 0.43975 0.52980 1.35645 1.39562 1.48310 2.35149 2.82717 3.04263 3.34872 3.39106 4.03820 4.18865 4.23867 4.46328 4.50176 4.64008 4.74259 4.90546 5.06614 5.17028 5.39710 5.53034 5.57010 5.65456 5.94745 6.01747 6.11013 6.63450 6.88743 6.93406 6.95242 7.10961 7.38172 8.81109 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.029643 B = 0.009051 C = 0.008044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.341065 B = 3092.869202 C = 3479.894854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.028 3.972 3 Si 0.952 3.048 4 H -0.275 1.275 5 H -0.280 1.280 6 H -0.276 1.276 7 C -0.551 4.551 8 H 0.042 0.958 9 C 0.246 3.754 10 H 0.022 0.978 11 N -0.844 5.844 12 C -0.062 4.062 13 C -0.105 4.105 14 C -0.147 4.147 15 C 0.079 3.921 16 O -0.505 6.505 17 C -0.133 4.133 18 C -0.093 4.093 19 C 0.129 3.871 20 O -0.580 6.580 21 H 0.268 0.732 22 H 0.319 0.681 23 H 0.346 0.654 24 H 0.133 0.867 25 H 0.146 0.854 26 H 0.405 0.595 27 H 0.134 0.866 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.298 -7.916 -1.903 9.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.173 4.173 3 Si 0.778 3.222 4 H -0.201 1.201 5 H -0.206 1.206 6 H -0.201 1.201 7 C -0.591 4.591 8 H 0.061 0.939 9 C 0.136 3.864 10 H 0.040 0.960 11 N -0.373 5.373 12 C -0.062 4.062 13 C -0.123 4.123 14 C -0.165 4.165 15 C 0.035 3.965 16 O -0.317 6.317 17 C -0.152 4.152 18 C -0.094 4.094 19 C 0.052 3.948 20 O -0.389 6.389 21 H 0.078 0.922 22 H 0.129 0.871 23 H 0.161 0.839 24 H 0.151 0.849 25 H 0.164 0.836 26 H 0.263 0.737 27 H 0.152 0.848 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 4.541 -8.471 -1.601 9.744 hybrid contribution 0.042 2.080 -0.391 2.117 sum 4.583 -6.391 -1.992 8.113 Atomic orbital electron populations 1.69819 1.06722 1.28004 1.50601 1.25630 0.95648 1.01900 0.94072 0.85651 0.78594 0.79660 0.78288 1.20097 1.20585 1.20122 1.21879 0.93019 0.92061 1.52112 0.93939 1.17763 0.88952 0.88770 0.90940 0.95996 1.59520 1.18191 1.55359 1.04208 1.20180 0.97141 0.96136 0.92772 1.20945 0.97587 0.95596 0.98156 1.21556 0.97212 0.99133 0.98616 1.18387 0.93091 0.92602 0.92405 1.84756 1.34477 1.17890 1.94619 1.21177 0.98476 0.97212 0.98312 1.19554 0.98256 0.97116 0.94457 1.20683 0.94294 0.95388 0.84447 1.86321 1.69416 1.62923 1.20207 0.92223 0.87053 0.83872 0.84939 0.83580 0.73679 0.84849 0.92611 0.92409 0.75191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.62 11.54 21.45 0.25 -48.37 16 2 C 0.03 1.47 5.38 84.66 0.46 1.92 16 3 Si 0.95 41.87 29.54 68.60 2.03 43.89 16 4 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 5 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 6 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 7 C -0.55 -28.82 7.88 25.60 0.20 -28.61 16 8 H 0.04 2.30 7.74 -2.91 -0.02 2.28 16 9 C 0.25 12.00 2.42 43.42 0.11 12.10 16 10 H 0.02 1.19 7.05 -2.38 -0.02 1.17 16 11 N -0.84 -39.22 8.67 -174.95 -1.52 -40.73 16 12 C -0.06 -2.68 5.03 -19.85 -0.10 -2.78 16 13 C -0.10 -4.03 9.25 22.25 0.21 -3.83 16 14 C -0.15 -4.90 9.99 22.37 0.22 -4.68 16 15 C 0.08 2.66 6.70 22.51 0.15 2.81 16 16 O -0.51 -13.93 13.50 -92.39 -1.25 -15.18 16 17 C -0.13 -4.91 9.32 22.37 0.21 -4.70 16 18 C -0.09 -3.80 5.87 -19.88 -0.12 -3.92 16 19 C 0.13 4.87 6.23 71.24 0.44 5.31 16 20 O -0.58 -18.16 12.14 -148.98 -1.81 -19.97 16 21 H 0.27 13.64 8.31 -92.71 -0.77 12.87 16 22 H 0.32 13.98 7.28 -89.70 -0.65 13.33 16 23 H 0.35 17.29 7.08 -89.69 -0.63 16.65 16 24 H 0.13 4.87 6.24 -2.91 -0.02 4.85 16 25 H 0.15 3.96 8.06 -2.91 -0.02 3.94 16 26 H 0.41 6.74 9.06 -74.06 -0.67 6.07 16 27 H 0.13 4.69 7.00 -2.91 -0.02 4.67 16 28 H 0.06 2.10 7.55 -2.39 -0.02 2.08 16 29 H 0.06 2.38 7.38 -2.39 -0.02 2.36 16 30 H 0.40 8.23 9.12 -74.06 -0.68 7.56 16 Total: -1.00 -60.95 256.64 -1.94 -62.89 By element: Atomic # 1 Polarization: 45.25 SS G_CDS: -1.42 Total: 43.83 kcal Atomic # 6 Polarization: -28.15 SS G_CDS: 1.78 Total: -26.37 kcal Atomic # 7 Polarization: -87.83 SS G_CDS: -1.27 Total: -89.10 kcal Atomic # 8 Polarization: -32.09 SS G_CDS: -3.06 Total: -35.14 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.89 kcal Total: -60.95 -1.94 -62.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238621144.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.541 kcal (2) G-P(sol) polarization free energy of solvation -60.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds