Wall clock time and date at job start Mon Mar 30 2020 02:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48501 * 109.47213 * 239.99870 * 3 2 1 5 5 H 1.48502 * 109.47317 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47081 * 119.99498 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.52996 * 109.47059 * 179.72430 * 10 9 7 12 12 H 1.09000 * 109.47665 * 59.99541 * 11 10 9 13 13 O 1.42907 * 109.46877 * 299.99566 * 11 10 9 14 14 C 1.50697 * 109.47491 * 179.97438 * 11 10 9 15 15 C 1.38288 * 119.97359 * 84.99450 * 14 11 10 16 16 C 1.38251 * 120.11364 * 180.02562 * 15 14 11 17 17 C 1.38162 * 120.05119 * 359.95696 * 16 15 14 18 18 C 1.38715 * 119.94729 * 0.02562 * 17 16 15 19 19 O 1.35904 * 120.05403 * 180.02562 * 18 17 16 20 20 C 1.38122 * 119.97350 * 264.72447 * 14 11 10 21 21 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 22 22 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 23 23 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 24 24 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 25 25 H 0.96694 * 114.00447 * 299.99744 * 13 11 10 26 26 H 1.08002 * 119.94422 * 359.97438 * 15 14 11 27 27 H 1.07995 * 119.97069 * 179.97438 * 16 15 14 28 28 H 1.08005 * 120.02336 * 180.02562 * 17 16 15 29 29 H 0.96702 * 113.99632 * 90.00074 * 19 18 17 30 30 H 1.08004 * 120.02753 * 359.97438 * 20 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7465 -0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 6 1.0637 -4.8197 0.0127 12 1 0.4373 -4.7664 -0.8777 13 8 0.2417 -4.7381 1.1789 14 6 1.8170 -6.1248 0.0190 15 6 2.2529 -6.6652 1.2150 16 6 2.9447 -7.8621 1.2240 17 6 3.2016 -8.5218 0.0375 18 6 2.7652 -7.9820 -1.1634 19 8 3.0162 -8.6293 -2.3317 20 6 2.0668 -6.7831 -1.1693 21 1 -0.4850 0.8401 -0.0004 22 1 0.3555 -2.3880 0.0005 23 1 2.6849 -3.7190 -0.8822 24 1 2.6842 -3.7101 0.8977 25 1 0.7334 -4.7793 2.0104 26 1 2.0531 -6.1510 2.1434 27 1 3.2844 -8.2819 2.1593 28 1 3.7418 -9.4570 0.0452 29 1 2.3265 -9.2559 -2.5902 30 1 1.7221 -6.3631 -2.1027 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238683976.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:16 Heat of formation + Delta-G solvation = -85.206703 kcal Electronic energy + Delta-G solvation = -14617.371728 eV Core-core repulsion = 11990.897544 eV Total energy + Delta-G solvation = -2626.474184 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.94336 -38.96209 -37.13662 -35.96774 -33.36920 -32.31816 -30.65086 -28.80440 -25.79384 -23.70455 -23.55293 -22.13791 -19.47303 -19.09853 -17.86805 -17.11747 -17.04916 -16.45184 -16.16053 -15.61850 -15.45681 -15.01600 -14.61971 -14.27670 -13.64637 -13.48918 -13.09665 -12.90818 -12.74308 -12.53079 -12.28823 -12.16407 -11.86426 -11.63370 -11.01160 -10.92077 -9.83661 -9.56438 -9.04559 -7.95937 -5.26793 0.25645 0.33926 1.46665 1.50395 1.56793 2.53481 2.64696 3.21589 3.35267 3.51045 3.62159 3.91356 4.14721 4.18282 4.24912 4.28728 4.44180 4.60716 4.86630 4.88892 4.98384 5.09005 5.42206 5.43763 5.45295 5.59031 5.87910 6.24388 6.75641 6.85650 7.31359 8.05147 8.30310 9.27110 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.047089 B = 0.005522 C = 0.005353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.476737 B = 5069.321032 C = 5229.230565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.073 4.073 3 Si 0.978 3.022 4 H -0.278 1.278 5 H -0.293 1.293 6 H -0.276 1.276 7 C -0.254 4.254 8 H 0.075 0.925 9 N -0.740 5.740 10 C 0.131 3.869 11 C 0.151 3.849 12 H 0.095 0.905 13 O -0.560 6.560 14 C -0.099 4.099 15 C -0.128 4.128 16 C -0.096 4.096 17 C -0.150 4.150 18 C 0.100 3.900 19 O -0.510 6.510 20 C -0.153 4.153 21 H 0.253 0.747 22 H 0.377 0.623 23 H 0.024 0.976 24 H 0.029 0.971 25 H 0.383 0.617 26 H 0.138 0.862 27 H 0.158 0.842 28 H 0.150 0.850 29 H 0.410 0.590 30 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.475 -19.084 1.211 19.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.266 4.266 3 Si 0.806 3.194 4 H -0.204 1.204 5 H -0.219 1.219 6 H -0.202 1.202 7 C -0.385 4.385 8 H 0.093 0.907 9 N -0.383 5.383 10 C 0.004 3.996 11 C 0.092 3.908 12 H 0.113 0.887 13 O -0.367 6.367 14 C -0.100 4.100 15 C -0.146 4.146 16 C -0.114 4.114 17 C -0.168 4.168 18 C 0.056 3.944 19 O -0.323 6.323 20 C -0.171 4.171 21 H 0.061 0.939 22 H 0.209 0.791 23 H 0.042 0.958 24 H 0.047 0.953 25 H 0.233 0.767 26 H 0.156 0.844 27 H 0.176 0.824 28 H 0.168 0.832 29 H 0.269 0.731 30 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.663 -18.617 0.759 19.474 hybrid contribution -0.093 0.820 0.106 0.832 sum 5.570 -17.797 0.865 18.668 Atomic orbital electron populations 1.69843 1.06739 1.26303 1.58947 1.25631 0.96414 1.01267 1.03248 0.85156 0.77179 0.78796 0.78265 1.20364 1.21918 1.20157 1.19610 0.91467 0.85345 1.42126 0.90724 1.42446 1.05762 1.00721 1.89395 1.21403 0.93990 0.85608 0.98599 1.20806 0.91021 0.89725 0.89288 0.88676 1.86595 1.37387 1.96396 1.16365 1.20326 0.99073 0.96277 0.94367 1.21193 0.98770 0.97068 0.97592 1.21334 0.96906 0.94148 0.99025 1.21707 1.01812 1.01863 0.91411 1.18525 0.97335 0.92496 0.86088 1.84777 1.50208 1.59796 1.37494 1.21374 1.00731 0.96733 0.98285 0.93867 0.79086 0.95765 0.95335 0.76736 0.84447 0.82440 0.83188 0.73114 0.85622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.84 13.06 21.65 0.28 -60.56 16 2 C -0.07 -4.30 5.50 84.86 0.47 -3.83 16 3 Si 0.98 46.81 29.55 68.60 2.03 48.84 16 4 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 5 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 6 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 7 C -0.25 -14.65 9.99 84.03 0.84 -13.81 16 8 H 0.07 4.12 7.83 -2.91 -0.02 4.09 16 9 N -0.74 -39.30 5.49 -343.46 -1.89 -41.18 16 10 C 0.13 5.44 5.91 86.38 0.51 5.95 16 11 C 0.15 5.21 3.30 29.85 0.10 5.31 16 12 H 0.10 3.45 8.05 -2.39 -0.02 3.44 16 13 O -0.56 -19.63 12.88 -148.98 -1.92 -21.55 16 14 C -0.10 -2.80 5.00 -19.88 -0.10 -2.90 16 15 C -0.13 -2.98 9.33 22.28 0.21 -2.77 16 16 C -0.10 -1.81 10.04 22.25 0.22 -1.58 16 17 C -0.15 -2.88 9.99 22.37 0.22 -2.66 16 18 C 0.10 2.29 6.70 22.51 0.15 2.44 16 19 O -0.51 -10.14 13.50 -92.47 -1.25 -11.38 16 20 C -0.15 -4.08 9.62 22.36 0.22 -3.87 16 21 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 22 H 0.38 21.59 7.54 -92.71 -0.70 20.89 16 23 H 0.02 1.03 8.14 -2.38 -0.02 1.01 16 24 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.38 10.73 7.39 -74.06 -0.55 10.18 16 26 H 0.14 2.74 6.61 -2.91 -0.02 2.72 16 27 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 28 H 0.15 2.12 8.06 -2.91 -0.02 2.09 16 29 H 0.41 3.91 9.06 -74.06 -0.67 3.24 16 30 H 0.13 3.33 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -71.70 266.44 -0.65 -72.35 By element: Atomic # 1 Polarization: 31.96 SS G_CDS: -0.74 Total: 31.23 kcal Atomic # 6 Polarization: -20.57 SS G_CDS: 2.84 Total: -17.73 kcal Atomic # 7 Polarization: -100.14 SS G_CDS: -1.60 Total: -101.74 kcal Atomic # 8 Polarization: -29.76 SS G_CDS: -3.17 Total: -32.93 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.84 kcal Total: -71.70 -0.65 -72.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238683976.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.861 kcal (2) G-P(sol) polarization free energy of solvation -71.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds