Wall clock time and date at job start Mon Mar 30 2020 02:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99776 * 2 1 4 4 H 1.48500 * 109.47045 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47426 * 300.00180 * 3 2 1 6 6 H 1.48501 * 109.46833 * 60.00423 * 3 2 1 7 7 C 1.38811 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99701 * 179.73016 * 7 2 1 9 9 N 1.36935 * 120.00369 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99926 * 179.73019 * 9 7 2 11 11 C 1.53003 * 109.46708 * 180.02562 * 10 9 7 12 12 H 1.09007 * 109.46905 * 304.99283 * 11 10 9 13 13 O 1.42894 * 109.47603 * 64.99900 * 11 10 9 14 14 C 1.50701 * 109.46858 * 184.99904 * 11 10 9 15 15 C 1.38287 * 119.97172 * 279.72325 * 14 11 10 16 16 C 1.38241 * 120.11318 * 179.72660 * 15 14 11 17 17 C 1.38171 * 120.05290 * 0.54455 * 16 15 14 18 18 C 1.38714 * 119.94471 * 359.73247 * 17 16 15 19 19 O 1.35896 * 120.05472 * 179.97438 * 18 17 16 20 20 C 1.38128 * 119.97431 * 99.99611 * 14 11 10 21 21 H 0.97004 * 120.00382 * 359.97438 * 1 2 3 22 22 H 0.97005 * 119.99813 * 359.72895 * 9 7 2 23 23 H 1.08998 * 109.47134 * 299.99639 * 10 9 7 24 24 H 1.08994 * 109.47397 * 59.99931 * 10 9 7 25 25 H 0.96698 * 113.99844 * 59.99373 * 13 11 10 26 26 H 1.07998 * 119.94565 * 359.97438 * 15 14 11 27 27 H 1.07997 * 119.97844 * 180.25339 * 16 15 14 28 28 H 1.08004 * 120.02777 * 179.70558 * 17 16 15 29 29 H 0.96703 * 113.99962 * 270.02023 * 19 18 17 30 30 H 1.07999 * 120.02789 * 0.02562 * 20 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0049 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0071 11 6 1.0638 -4.8197 -0.0063 12 1 0.3831 -4.7152 0.8387 13 8 0.3164 -4.8084 -1.2242 14 6 1.8137 -6.1216 0.1108 15 6 2.4059 -6.6807 -1.0068 16 6 3.0993 -7.8720 -0.9016 17 6 3.1927 -8.5128 0.3190 18 6 2.5947 -7.9570 1.4404 19 8 2.6847 -8.5856 2.6418 20 6 1.9041 -6.7583 1.3332 21 1 -0.4851 0.8400 0.0004 22 1 0.3555 -2.3881 0.0038 23 1 2.6807 -3.7122 -0.9000 24 1 2.6887 -3.7168 0.8799 25 1 0.8592 -4.8975 -2.0195 26 1 2.3300 -6.1838 -1.9626 27 1 3.5644 -8.3046 -1.7750 28 1 3.7305 -9.4459 0.3997 29 1 1.9676 -9.2115 2.8130 30 1 1.4374 -6.3238 2.2048 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238708706.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:18 Heat of formation + Delta-G solvation = -85.810925 kcal Electronic energy + Delta-G solvation = -14610.151967 eV Core-core repulsion = 11983.651582 eV Total energy + Delta-G solvation = -2626.500385 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.94251 -38.96020 -37.13758 -35.99204 -33.37031 -32.31481 -30.66899 -28.79218 -25.79118 -23.76461 -23.52536 -22.14402 -19.47302 -19.10041 -17.85664 -17.12104 -17.04957 -16.45946 -16.16999 -15.60647 -15.45911 -15.00546 -14.63370 -14.29563 -13.64668 -13.49458 -13.10902 -12.92083 -12.80751 -12.53462 -12.27308 -12.08890 -11.87288 -11.62983 -11.03217 -10.92221 -9.84319 -9.56647 -9.05084 -7.96782 -5.27493 0.25464 0.33837 1.46660 1.48079 1.58321 2.53036 2.64441 3.21267 3.34955 3.52794 3.61686 3.90230 4.14095 4.18083 4.23419 4.28928 4.44631 4.60616 4.86412 4.89303 4.98415 5.08774 5.42324 5.43692 5.45529 5.58804 5.88007 6.23948 6.76378 6.85432 7.30686 8.04205 8.29027 9.26809 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.046582 B = 0.005507 C = 0.005367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.942986 B = 5082.762016 C = 5215.734107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.074 4.074 3 Si 0.978 3.022 4 H -0.266 1.266 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.251 4.251 8 H 0.076 0.924 9 N -0.741 5.741 10 C 0.131 3.869 11 C 0.151 3.849 12 H 0.094 0.906 13 O -0.561 6.561 14 C -0.100 4.100 15 C -0.128 4.128 16 C -0.096 4.096 17 C -0.149 4.149 18 C 0.100 3.900 19 O -0.510 6.510 20 C -0.153 4.153 21 H 0.252 0.748 22 H 0.376 0.624 23 H 0.031 0.969 24 H 0.024 0.976 25 H 0.384 0.616 26 H 0.139 0.861 27 H 0.158 0.842 28 H 0.151 0.849 29 H 0.410 0.590 30 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.690 -19.206 -0.770 20.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.806 3.194 4 H -0.190 1.190 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.382 4.382 8 H 0.094 0.906 9 N -0.384 5.384 10 C 0.004 3.996 11 C 0.092 3.908 12 H 0.111 0.889 13 O -0.368 6.368 14 C -0.101 4.101 15 C -0.146 4.146 16 C -0.114 4.114 17 C -0.168 4.168 18 C 0.055 3.945 19 O -0.323 6.323 20 C -0.171 4.171 21 H 0.061 0.939 22 H 0.208 0.792 23 H 0.049 0.951 24 H 0.042 0.958 25 H 0.233 0.767 26 H 0.156 0.844 27 H 0.176 0.824 28 H 0.168 0.832 29 H 0.269 0.731 30 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.862 -18.720 -0.292 19.618 hybrid contribution -0.141 0.820 -0.128 0.842 sum 5.721 -17.899 -0.420 18.796 Atomic orbital electron populations 1.69852 1.06762 1.26165 1.59155 1.25632 0.96417 1.01281 1.03335 0.85019 0.78151 0.79426 0.76802 1.18991 1.21756 1.21870 1.19681 0.91492 0.85300 1.41760 0.90642 1.42477 1.05722 1.00818 1.89365 1.21420 0.93975 0.85526 0.98635 1.20806 0.92189 0.89821 0.88010 0.88857 1.86599 1.37992 1.96264 1.15951 1.20320 0.98960 0.96317 0.94458 1.21197 0.97955 0.96948 0.98451 1.21340 0.97520 0.94298 0.98243 1.21713 1.01411 1.01840 0.91805 1.18524 0.97748 0.92615 0.85586 1.84774 1.53495 1.60590 1.33431 1.21386 1.01237 0.96860 0.97659 0.93874 0.79193 0.95100 0.95796 0.76688 0.84358 0.82391 0.83178 0.73112 0.85718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.95 13.06 21.65 0.28 -60.67 16 2 C -0.07 -4.37 5.50 84.86 0.47 -3.91 16 3 Si 0.98 46.87 29.55 68.60 2.03 48.89 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 6 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 7 C -0.25 -14.45 9.99 84.03 0.84 -13.61 16 8 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 9 N -0.74 -39.32 5.55 -343.46 -1.91 -41.22 16 10 C 0.13 5.43 5.88 86.38 0.51 5.94 16 11 C 0.15 5.21 3.24 29.85 0.10 5.31 16 12 H 0.09 3.43 8.00 -2.38 -0.02 3.41 16 13 O -0.56 -19.48 13.13 -148.98 -1.96 -21.44 16 14 C -0.10 -2.80 4.97 -19.88 -0.10 -2.90 16 15 C -0.13 -2.93 9.32 22.28 0.21 -2.72 16 16 C -0.10 -1.79 10.04 22.25 0.22 -1.56 16 17 C -0.15 -2.87 9.99 22.37 0.22 -2.65 16 18 C 0.10 2.29 6.70 22.51 0.15 2.45 16 19 O -0.51 -10.20 13.50 -92.38 -1.25 -11.45 16 20 C -0.15 -4.11 9.61 22.37 0.21 -3.90 16 21 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 22 H 0.38 21.54 7.67 -92.70 -0.71 20.83 16 23 H 0.03 1.23 8.14 -2.39 -0.02 1.22 16 24 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.38 10.45 7.49 -74.06 -0.55 9.90 16 26 H 0.14 2.69 6.77 -2.91 -0.02 2.67 16 27 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 28 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 29 H 0.41 3.96 9.06 -74.06 -0.67 3.29 16 30 H 0.12 3.35 8.04 -2.91 -0.02 3.33 16 Total: -1.00 -72.01 266.93 -0.73 -72.74 By element: Atomic # 1 Polarization: 31.46 SS G_CDS: -0.76 Total: 30.70 kcal Atomic # 6 Polarization: -20.39 SS G_CDS: 2.83 Total: -17.56 kcal Atomic # 7 Polarization: -100.27 SS G_CDS: -1.62 Total: -101.89 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -3.20 Total: -32.88 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.89 kcal Total: -72.01 -0.73 -72.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238708706.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.072 kcal (2) G-P(sol) polarization free energy of solvation -72.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds