Wall clock time and date at job start Mon Mar 30 2020 03:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34515 * 125.79319 * 2 1 4 4 C 1.41376 * 106.84242 * 179.73499 * 3 2 1 5 5 C 1.34516 * 106.84089 * 0.02562 * 4 3 2 6 6 C 1.50708 * 125.78754 * 180.02562 * 5 4 3 7 7 N 1.46498 * 109.46785 * 90.00046 * 6 5 4 8 8 C 1.34776 * 119.99578 * 180.02562 * 7 6 5 9 9 O 1.21280 * 120.00361 * 359.97438 * 8 7 6 10 10 C 1.50699 * 120.00008 * 179.97438 * 8 7 6 11 11 C 1.50699 * 109.47221 * 179.97438 * 10 8 7 12 12 H 1.07992 * 120.00231 * 0.02562 * 11 10 8 13 13 C 1.37879 * 119.99841 * 179.97438 * 11 10 8 14 14 N 1.31514 * 120.00285 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99993 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46762 * 0.02562 * 15 13 11 17 17 H 1.48494 * 109.46755 * 120.00225 * 15 13 11 18 18 H 1.48489 * 109.47408 * 240.00657 * 15 13 11 19 19 O 1.34298 * 108.42070 * 0.02562 * 5 4 3 20 20 H 1.09007 * 109.47122 * 90.00090 * 1 2 3 21 21 H 1.09004 * 109.47299 * 210.00077 * 1 2 3 22 22 H 1.09003 * 109.47154 * 330.00412 * 1 2 3 23 23 H 1.07995 * 126.57546 * 359.70154 * 3 2 1 24 24 H 1.08003 * 126.57866 * 179.97438 * 4 3 2 25 25 H 1.09000 * 109.46884 * 209.99804 * 6 5 4 26 26 H 1.09003 * 109.47129 * 329.99652 * 6 5 4 27 27 H 0.96995 * 120.00591 * 359.97438 * 7 6 5 28 28 H 1.08992 * 109.47267 * 299.99995 * 10 8 7 29 29 H 1.09003 * 109.47291 * 59.99818 * 10 8 7 30 30 H 0.96998 * 119.99997 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6320 0.0063 5 6 3.5813 -0.7123 0.0091 6 6 4.7705 -1.6380 0.0164 7 7 5.1498 -1.9347 1.4000 8 6 6.1946 -2.7477 1.6527 9 8 6.8206 -3.2339 0.7347 10 6 6.5852 -3.0525 3.0759 11 6 7.7743 -3.9783 3.0832 12 1 8.2045 -4.3121 2.1506 13 6 8.3137 -4.3982 4.2806 14 7 7.7902 -3.9912 5.4163 15 14 9.7882 -5.5452 4.2897 16 1 10.1847 -5.8525 2.8920 17 1 10.9204 -4.8901 4.9924 18 1 9.4316 -6.8041 4.9917 19 8 2.2923 -1.0895 0.0044 20 1 -0.3634 0.0000 -1.0277 21 1 -0.3634 -0.8900 0.5139 22 1 -0.3633 0.8900 0.5138 23 1 1.9666 2.1203 -0.0045 24 1 4.5212 1.2433 0.0076 25 1 4.5127 -2.5646 -0.4964 26 1 5.6061 -1.1601 -0.4949 27 1 4.6494 -1.5456 2.1342 28 1 6.8427 -2.1257 3.5884 29 1 5.7498 -3.5306 3.5875 30 1 8.1695 -4.2870 6.2587 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258685568.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:03 Heat of formation + Delta-G solvation = -58.161105 kcal Electronic energy + Delta-G solvation = -14330.415219 eV Core-core repulsion = 11705.113820 eV Total energy + Delta-G solvation = -2625.301399 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.62058 -40.43753 -36.08344 -35.09973 -34.15845 -32.92668 -31.22533 -29.14314 -26.04529 -24.72129 -22.76803 -21.51391 -21.17358 -18.58269 -18.32109 -17.46033 -16.98890 -16.62130 -16.35005 -16.10594 -15.15134 -14.66466 -14.45750 -14.17355 -13.82264 -13.78415 -13.73448 -13.33270 -13.09206 -12.78715 -12.63039 -12.54410 -12.05443 -11.43794 -10.95043 -10.66016 -10.63348 -10.12734 -9.33441 -8.25461 -6.33066 0.56510 1.40706 1.41265 1.55490 1.58010 1.81215 1.86510 2.38463 2.60146 3.09976 3.54876 3.94597 4.07956 4.22014 4.29608 4.58690 4.61635 4.72621 4.81867 4.87439 5.05584 5.07033 5.22449 5.24522 5.40142 5.59975 5.73195 6.03220 6.16992 6.62370 6.81764 7.31729 7.43674 8.87003 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.064182 B = 0.004712 C = 0.004588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.153586 B = 5940.668648 C = 6101.447604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.014 4.014 3 C -0.224 4.224 4 C -0.181 4.181 5 C -0.053 4.053 6 C 0.205 3.795 7 N -0.726 5.726 8 C 0.522 3.478 9 O -0.580 6.580 10 C 0.008 3.992 11 C -0.537 4.537 12 H 0.057 0.943 13 C 0.009 3.991 14 N -0.926 5.926 15 Si 0.966 3.034 16 H -0.274 1.274 17 H -0.272 1.272 18 H -0.272 1.272 19 O -0.192 6.192 20 H 0.096 0.904 21 H 0.078 0.922 22 H 0.111 0.889 23 H 0.175 0.825 24 H 0.163 0.837 25 H 0.070 0.930 26 H 0.100 0.900 27 H 0.410 0.590 28 H 0.045 0.955 29 H 0.042 0.958 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.498 11.079 -8.868 20.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.065 4.065 3 C -0.242 4.242 4 C -0.201 4.201 5 C -0.103 4.103 6 C 0.082 3.918 7 N -0.380 5.380 8 C 0.312 3.688 9 O -0.460 6.460 10 C -0.032 4.032 11 C -0.575 4.575 12 H 0.075 0.925 13 C -0.189 4.189 14 N -0.565 5.565 15 Si 0.791 3.209 16 H -0.199 1.199 17 H -0.197 1.197 18 H -0.198 1.198 19 O -0.089 6.089 20 H 0.115 0.885 21 H 0.097 0.903 22 H 0.130 0.870 23 H 0.193 0.807 24 H 0.181 0.819 25 H 0.088 0.912 26 H 0.118 0.882 27 H 0.246 0.754 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.136 10.415 -9.354 19.895 hybrid contribution 0.649 -0.266 0.528 0.878 sum -13.487 10.148 -8.826 19.047 Atomic orbital electron populations 1.20533 0.82298 1.05328 1.04850 1.23376 0.95715 0.83694 1.03670 1.21935 0.91877 1.00715 1.09715 1.21968 0.99680 0.93303 1.05131 1.22140 0.82752 0.94733 1.10663 1.19483 0.90824 0.97006 0.84456 1.46144 1.33159 1.50350 1.08380 1.21480 0.78275 0.76198 0.92850 1.90522 1.54337 1.52983 1.48129 1.19096 0.97636 0.98244 0.88204 1.21413 1.14219 1.28819 0.93078 0.92485 1.25813 1.00284 0.97966 0.94859 1.70041 1.42648 1.46022 0.97835 0.85374 0.78862 0.78592 0.78081 1.19867 1.19699 1.19781 1.83973 1.16592 1.36507 1.71855 0.88525 0.90332 0.87016 0.80747 0.81933 0.91171 0.88235 0.75442 0.93726 0.94008 0.92366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.85 10.42 71.23 0.74 -0.11 16 2 C -0.01 -0.29 7.32 24.83 0.18 -0.11 16 3 C -0.22 -4.40 10.81 22.19 0.24 -4.16 16 4 C -0.18 -4.19 10.81 22.19 0.24 -3.95 16 5 C -0.05 -1.45 6.69 24.84 0.17 -1.28 16 6 C 0.21 6.31 6.20 85.64 0.53 6.84 16 7 N -0.73 -25.89 5.55 -466.78 -2.59 -28.48 16 8 C 0.52 24.46 7.82 87.66 0.69 25.15 16 9 O -0.58 -31.02 15.46 -3.03 -0.05 -31.07 16 10 C 0.01 0.40 5.46 29.10 0.16 0.56 16 11 C -0.54 -32.05 8.92 25.60 0.23 -31.82 16 12 H 0.06 3.57 6.75 -2.91 -0.02 3.55 16 13 C 0.01 0.54 5.46 84.66 0.46 1.00 16 14 N -0.93 -54.65 13.29 21.45 0.28 -54.37 16 15 Si 0.97 45.62 29.54 68.60 2.03 47.65 16 16 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 17 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 18 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 19 O -0.19 -5.22 10.65 -2.45 -0.03 -5.24 16 20 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 21 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 22 H 0.11 0.77 8.14 -2.39 -0.02 0.76 16 23 H 0.18 2.36 8.06 -2.91 -0.02 2.33 16 24 H 0.16 3.24 8.06 -2.91 -0.02 3.21 16 25 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 26 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 27 H 0.41 12.89 8.46 -92.71 -0.78 12.11 16 28 H 0.04 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.04 2.22 8.14 -2.39 -0.02 2.21 16 30 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 Total: -1.00 -71.14 272.34 3.65 -67.49 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: 0.36 Total: 11.90 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: 3.64 Total: -7.88 kcal Atomic # 7 Polarization: -80.55 SS G_CDS: -2.30 Total: -82.85 kcal Atomic # 8 Polarization: -36.24 SS G_CDS: -0.07 Total: -36.31 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -71.14 3.65 -67.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258685568.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.329 kcal (2) G-P(sol) polarization free energy of solvation -71.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds