Wall clock time and date at job start Mon Mar 30 2020 02:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76202 * 102.99766 * 2 1 4 4 C 1.39051 * 119.99217 * 0.24783 * 3 2 1 5 5 C 1.37926 * 120.00797 * 180.25552 * 4 3 2 6 6 C 1.39124 * 119.99142 * 359.47476 * 5 4 3 7 7 N 1.39368 * 120.01004 * 180.29479 * 6 5 4 8 8 C 1.46501 * 120.00143 * 0.02562 * 7 6 5 9 9 C 1.36842 * 120.00002 * 179.97438 * 7 6 5 10 10 H 1.08000 * 119.99999 * 25.48528 * 9 7 6 11 11 C 1.38718 * 119.99880 * 205.48103 * 9 7 6 12 12 N 1.31646 * 120.00242 * 14.88884 * 11 9 7 13 13 Si 1.86803 * 119.99890 * 194.89434 * 11 9 7 14 14 H 1.48498 * 109.47030 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.47220 * 120.00146 * 13 11 9 16 16 H 1.48499 * 109.47149 * 239.99774 * 13 11 9 17 17 C 1.39127 * 119.97932 * 0.27647 * 6 5 4 18 18 C 1.37920 * 119.99308 * 359.97438 * 17 6 5 19 19 H 1.08999 * 109.47582 * 299.99949 * 1 2 3 20 20 H 1.08994 * 109.47066 * 60.00559 * 1 2 3 21 21 H 1.09009 * 109.46695 * 180.02562 * 1 2 3 22 22 H 1.08008 * 119.99540 * 0.03067 * 4 3 2 23 23 H 1.08001 * 120.00175 * 179.74833 * 5 4 3 24 24 H 1.09004 * 109.47054 * 84.82754 * 8 7 6 25 25 H 1.08997 * 109.47267 * 204.83376 * 8 7 6 26 26 H 1.09000 * 109.46887 * 324.83383 * 8 7 6 27 27 H 0.96995 * 119.99806 * 179.97438 * 12 11 9 28 28 H 1.08004 * 120.00000 * 180.02562 * 17 6 5 29 29 H 1.08007 * 119.99790 * 179.97438 * 18 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1932 2.6650 0.0052 5 6 1.5030 4.0090 -0.0001 6 6 2.8334 4.4160 0.0003 7 7 3.1469 5.7740 0.0012 8 6 2.0754 6.7732 0.0021 9 6 4.4555 6.1741 0.0022 10 1 5.2190 5.5248 -0.4001 11 6 4.8013 7.4138 0.5198 12 7 3.9441 8.0778 1.2663 13 14 6.4834 8.1409 0.1575 14 1 7.2537 7.2038 -0.6991 15 1 6.3208 9.4368 -0.5493 16 1 7.2128 8.3605 1.4322 17 6 3.8507 3.4670 0.0004 18 6 3.5401 2.1233 0.0005 19 1 -0.3634 0.5138 0.8899 20 1 -0.3633 0.5137 -0.8900 21 1 -0.3633 -1.0278 0.0005 22 1 0.1604 2.3490 0.0098 23 1 0.7129 4.7454 -0.0002 24 1 1.7468 6.9525 1.0259 25 1 2.4456 7.7033 -0.4289 26 1 1.2366 6.4069 -0.5898 27 1 4.1861 8.9445 1.6285 28 1 4.8836 3.7826 0.0011 29 1 4.3298 1.3865 0.0001 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258881883.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:10 Heat of formation + Delta-G solvation = 35.543386 kcal Electronic energy + Delta-G solvation = -12794.816410 eV Core-core repulsion = 10616.331213 eV Total energy + Delta-G solvation = -2178.485196 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 223.073 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.49562 -35.62141 -32.05782 -30.44653 -28.86567 -28.25313 -26.54291 -23.89163 -21.46046 -20.43664 -17.35795 -17.11673 -15.93655 -14.80863 -14.28580 -14.00815 -13.76739 -13.53097 -13.30307 -13.00176 -12.78471 -12.21405 -11.79282 -11.48453 -11.30996 -11.02056 -10.88652 -10.75816 -10.42333 -9.93018 -9.67655 -9.54829 -8.87851 -8.08960 -7.62281 -6.55925 -6.17275 -3.84440 2.18878 2.38407 2.41630 3.09747 3.12478 3.14875 3.19195 3.99258 4.61194 4.90208 5.05071 5.29016 5.30819 5.64381 5.78020 5.86016 6.24003 6.35771 6.47624 6.64872 6.78588 6.94899 7.08691 7.17731 7.25116 7.39051 7.44408 7.74094 8.01326 8.56366 9.19757 9.52182 10.54345 Molecular weight = 223.07amu Principal moments of inertia in cm(-1) A = 0.058195 B = 0.006549 C = 0.005990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.024695 B = 4274.509499 C = 4673.630278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 S -0.169 6.169 3 C -0.207 4.207 4 C -0.066 4.066 5 C -0.226 4.226 6 C 0.212 3.788 7 N -0.443 5.443 8 C 0.120 3.880 9 C -0.310 4.310 10 H 0.097 0.903 11 C 0.029 3.971 12 N -0.872 5.872 13 Si 0.926 3.074 14 H -0.267 1.267 15 H -0.279 1.279 16 H -0.280 1.280 17 C -0.200 4.200 18 C -0.038 4.038 19 H 0.076 0.924 20 H 0.076 0.924 21 H 0.094 0.906 22 H 0.103 0.897 23 H 0.110 0.890 24 H 0.050 0.950 25 H 0.070 0.930 26 H 0.029 0.971 27 H 0.269 0.731 28 H 0.121 0.879 29 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.329 -6.991 -2.237 8.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 S 0.067 5.933 3 C -0.322 4.322 4 C -0.090 4.090 5 C -0.252 4.252 6 C 0.093 3.907 7 N -0.127 5.127 8 C -0.023 4.023 9 C -0.439 4.439 10 H 0.115 0.885 11 C -0.176 4.176 12 N -0.507 5.507 13 Si 0.752 3.248 14 H -0.191 1.191 15 H -0.205 1.205 16 H -0.206 1.206 17 C -0.226 4.226 18 C -0.061 4.061 19 H 0.095 0.905 20 H 0.095 0.905 21 H 0.113 0.887 22 H 0.121 0.879 23 H 0.128 0.872 24 H 0.068 0.932 25 H 0.089 0.911 26 H 0.048 0.952 27 H 0.080 0.920 28 H 0.139 0.861 29 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.606 -7.399 -2.124 8.501 hybrid contribution -0.119 1.691 0.000 1.695 sum -3.725 -5.709 -2.124 7.140 Atomic orbital electron populations 1.23440 0.96051 1.05591 1.04959 1.84806 1.05285 1.07661 1.95509 1.20627 0.96349 0.93303 1.21890 1.20529 0.96472 0.92605 0.99402 1.20251 0.94558 0.94943 1.15433 1.18065 0.92740 0.84886 0.95016 1.42633 1.05817 1.00628 1.63647 1.21416 0.88419 0.92090 1.00419 1.19637 0.83874 1.02392 1.37971 0.88526 1.25386 0.99656 0.97646 0.94930 1.70111 1.36135 1.14642 1.29850 0.85870 0.81437 0.79070 0.78427 1.19112 1.20506 1.20570 1.20403 0.98544 0.91162 1.12471 1.20227 0.93447 0.94934 0.97532 0.90503 0.90526 0.88680 0.87928 0.87244 0.93169 0.91119 0.95244 0.92047 0.86129 0.87499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.63 9.15 101.05 0.92 -0.70 15 2 S -0.17 -2.76 22.56 -107.50 -2.43 -5.18 15 3 C -0.21 -4.02 6.12 -38.98 -0.24 -4.25 15 4 C -0.07 -1.28 9.35 -39.39 -0.37 -1.65 15 5 C -0.23 -4.76 9.19 -39.37 -0.36 -5.12 15 6 C 0.21 4.97 6.52 -83.77 -0.55 4.42 15 7 N -0.44 -11.03 3.12 -120.47 -0.38 -11.40 15 8 C 0.12 2.75 8.33 59.85 0.50 3.25 15 9 C -0.31 -8.01 8.93 -15.14 -0.14 -8.15 15 10 H 0.10 2.43 6.26 -52.49 -0.33 2.10 15 11 C 0.03 0.72 4.97 -17.45 -0.09 0.63 15 12 N -0.87 -22.83 11.04 55.49 0.61 -22.22 15 13 Si 0.93 19.64 29.58 -169.99 -5.03 14.61 15 14 H -0.27 -5.56 7.11 56.52 0.40 -5.15 15 15 H -0.28 -5.87 7.11 56.52 0.40 -5.47 15 16 H -0.28 -5.96 7.11 56.52 0.40 -5.56 15 17 C -0.20 -4.47 9.26 -39.37 -0.36 -4.83 15 18 C -0.04 -0.77 9.78 -39.40 -0.39 -1.15 15 19 H 0.08 0.93 7.73 -51.92 -0.40 0.52 15 20 H 0.08 0.91 7.76 -51.93 -0.40 0.51 15 21 H 0.09 0.95 8.14 -51.92 -0.42 0.53 15 22 H 0.10 1.69 5.87 -52.48 -0.31 1.38 15 23 H 0.11 2.15 6.25 -52.49 -0.33 1.83 15 24 H 0.05 1.19 7.85 -51.93 -0.41 0.78 15 25 H 0.07 1.68 6.87 -51.93 -0.36 1.32 15 26 H 0.03 0.59 6.48 -51.93 -0.34 0.25 15 27 H 0.27 6.66 8.31 -40.82 -0.34 6.32 15 28 H 0.12 2.68 6.21 -52.48 -0.33 2.35 15 29 H 0.11 1.95 8.06 -52.48 -0.42 1.53 15 LS Contribution 255.00 15.07 3.84 3.84 Total: -1.00 -27.05 255.00 -7.61 -34.67 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -3.18 Total: 3.23 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: -1.06 Total: -17.55 kcal Atomic # 7 Polarization: -33.86 SS G_CDS: 0.24 Total: -33.62 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.03 Total: 14.61 kcal Atomic # 16 Polarization: -2.76 SS G_CDS: -2.43 Total: -5.18 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -27.05 -7.61 -34.67 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258881883.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.210 kcal (2) G-P(sol) polarization free energy of solvation -27.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds