Wall clock time and date at job start Mon Mar 30 2020 03:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35276 * 126.64378 * 2 1 4 4 C 1.42443 * 103.91118 * 179.97438 * 3 2 1 5 5 C 1.47762 * 126.95965 * 179.97438 * 4 3 2 6 6 O 1.20825 * 120.00219 * 359.97438 * 5 4 3 7 7 C 1.50698 * 119.99818 * 180.02562 * 5 4 3 8 8 C 1.53006 * 109.47184 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47127 * 179.97438 * 8 7 5 10 10 C 1.50696 * 109.47055 * 179.97438 * 9 8 7 11 11 H 1.08000 * 120.00290 * 0.02562 * 10 9 8 12 12 C 1.37887 * 120.00079 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99685 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00129 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.46879 * 60.00177 * 14 12 10 16 16 H 1.48494 * 109.47196 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47151 * 300.00589 * 14 12 10 18 18 N 1.31158 * 106.07251 * 0.22519 * 4 3 2 19 19 O 1.20901 * 111.39837 * 359.60373 * 18 4 3 20 20 H 1.08997 * 109.46952 * 89.99379 * 1 2 3 21 21 H 1.08991 * 109.47045 * 209.99543 * 1 2 3 22 22 H 1.09000 * 109.46721 * 330.00290 * 1 2 3 23 23 H 1.08003 * 128.04058 * 359.96108 * 3 2 1 24 24 H 1.09001 * 109.47612 * 59.99821 * 7 5 4 25 25 H 1.09001 * 109.47122 * 299.99652 * 7 5 4 26 26 H 1.09001 * 109.47002 * 299.99404 * 8 7 5 27 27 H 1.08993 * 109.46955 * 59.99842 * 8 7 5 28 28 H 1.09001 * 109.47289 * 299.99953 * 9 8 7 29 29 H 1.09004 * 109.47261 * 59.99697 * 9 8 7 30 30 H 0.96999 * 119.99910 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3144 1.0854 0.0000 4 6 3.6282 0.5350 0.0006 5 6 4.9038 1.2806 0.0003 6 8 4.8974 2.4889 -0.0009 7 6 6.2129 0.5341 0.0005 8 6 7.3706 1.5346 -0.0005 9 6 8.6996 0.7767 0.0003 10 6 9.8398 1.7620 -0.0013 11 1 9.6368 2.8228 -0.0023 12 6 11.1423 1.3094 -0.0003 13 7 11.3894 0.0177 0.0014 14 14 12.5556 2.5308 -0.0016 15 1 12.4720 3.3857 1.2098 16 1 13.8455 1.7952 -0.0009 17 1 12.4726 3.3827 -1.2152 18 7 3.4761 -0.7678 -0.0040 19 8 2.3068 -1.0754 0.0005 20 1 -0.3633 0.0001 -1.0276 21 1 -0.3633 -0.8900 0.5137 22 1 -0.3633 0.8900 0.5138 23 1 2.0291 2.1271 -0.0006 24 1 6.2741 -0.0925 -0.8893 25 1 6.2741 -0.0919 0.8907 26 1 7.3093 2.1602 -0.8909 27 1 7.3097 2.1615 0.8890 28 1 8.7607 0.1512 0.8910 29 1 8.7608 0.1493 -0.8890 30 1 12.3056 -0.3008 0.0017 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259528191.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:08 Heat of formation + Delta-G solvation = 3.609348 kcal Electronic energy + Delta-G solvation = -14215.181113 eV Core-core repulsion = 11592.558282 eV Total energy + Delta-G solvation = -2622.622831 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -45.17677 -39.33821 -34.33101 -34.25481 -33.51714 -32.01596 -28.40102 -28.01597 -25.30814 -23.25218 -22.59958 -20.16683 -18.98051 -17.96348 -17.49642 -16.32734 -15.86811 -15.19359 -14.63733 -14.37263 -14.12781 -13.84525 -13.63361 -13.26948 -12.78301 -12.25978 -11.81903 -11.55927 -11.37537 -10.78522 -10.62798 -10.58248 -10.54508 -9.97069 -9.69445 -9.60537 -9.28229 -9.01822 -8.30998 -5.96342 -3.98396 0.90755 1.42243 2.78175 2.86907 3.37011 3.40571 3.43873 3.63717 4.07497 4.49648 4.63910 4.87828 4.93315 5.02123 5.27110 5.38419 5.39282 5.48249 5.70554 5.71537 5.82520 6.29963 6.67493 6.87292 7.09932 7.48742 7.70843 7.83834 7.95434 8.03685 8.46755 9.08344 9.65355 11.15088 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.082781 B = 0.004350 C = 0.004152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 338.161803 B = 6434.805909 C = 6741.916959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.042 4.042 3 C -0.193 4.193 4 C -0.054 4.054 5 C 0.436 3.564 6 O -0.432 6.432 7 C -0.156 4.156 8 C -0.102 4.102 9 C 0.021 3.979 10 C -0.521 4.521 11 H 0.055 0.945 12 C 0.056 3.944 13 N -0.897 5.897 14 Si 0.893 3.107 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 N -0.315 5.315 19 O 0.122 5.878 20 H 0.089 0.911 21 H 0.085 0.915 22 H 0.092 0.908 23 H 0.178 0.822 24 H 0.098 0.902 25 H 0.098 0.902 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.017 0.983 29 H 0.017 0.983 30 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.100 -1.195 0.006 22.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.105 4.105 3 C -0.215 4.215 4 C -0.211 4.211 5 C 0.309 3.691 6 O -0.302 6.302 7 C -0.194 4.194 8 C -0.140 4.140 9 C -0.016 4.016 10 C -0.559 4.559 11 H 0.074 0.926 12 C -0.145 4.145 13 N -0.536 5.536 14 Si 0.721 3.279 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.202 1.202 18 N -0.015 5.015 19 O 0.044 5.956 20 H 0.107 0.893 21 H 0.104 0.896 22 H 0.111 0.889 23 H 0.195 0.805 24 H 0.116 0.884 25 H 0.116 0.884 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.035 0.965 29 H 0.035 0.965 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -21.013 -1.630 0.000 21.076 hybrid contribution 0.461 1.231 -0.002 1.314 sum -20.552 -0.399 -0.002 20.556 Atomic orbital electron populations 1.20347 0.83568 1.04797 1.04252 1.24486 0.96524 0.85723 1.03762 1.22611 0.90465 1.01414 1.07013 1.24513 0.98321 0.90687 1.07615 1.21969 0.87897 0.88378 0.70820 1.90417 1.88955 1.15743 1.35054 1.22147 0.91874 1.00677 1.04668 1.21541 0.94104 0.96821 1.01518 1.19115 0.89726 0.95464 0.97324 1.21229 0.90984 0.93154 1.50515 0.92632 1.25031 0.98969 0.95153 0.95349 1.69958 1.20003 1.12729 1.50927 0.86640 0.81401 0.81205 0.78657 1.20224 1.21306 1.20228 1.74290 0.96501 1.15815 1.14869 1.84801 1.11369 1.33586 1.65830 0.89280 0.89634 0.88918 0.80480 0.88370 0.88369 0.92682 0.92687 0.96473 0.96477 0.92969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.31 10.44 36.01 0.38 0.06 16 2 C -0.04 -0.39 7.47 -35.36 -0.26 -0.66 16 3 C -0.19 -2.21 10.92 -39.02 -0.43 -2.64 16 4 C -0.05 -0.80 7.12 -82.64 -0.59 -1.39 16 5 C 0.44 7.43 7.16 -30.42 -0.22 7.21 16 6 O -0.43 -8.23 16.56 5.94 0.10 -8.13 16 7 C -0.16 -2.83 5.51 -27.88 -0.15 -2.98 16 8 C -0.10 -2.25 4.44 -26.73 -0.12 -2.37 16 9 C 0.02 0.55 4.97 -27.89 -0.14 0.41 16 10 C -0.52 -15.28 9.11 -34.44 -0.31 -15.59 16 11 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 12 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 13 N -0.90 -27.51 13.29 55.43 0.74 -26.77 16 14 Si 0.89 22.22 29.54 -169.99 -5.02 17.20 16 15 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 16 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 N -0.31 -4.56 11.98 33.25 0.40 -4.16 16 19 O 0.12 1.44 11.17 17.24 0.19 1.63 16 20 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 21 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 22 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 23 H 0.18 1.70 8.06 -52.48 -0.42 1.27 16 24 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 25 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 26 H 0.05 1.23 8.10 -51.93 -0.42 0.81 16 27 H 0.05 1.23 8.10 -51.93 -0.42 0.80 16 28 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 273.76 15.07 4.13 4.13 Total: -1.00 -33.19 273.76 -5.18 -38.37 By element: Atomic # 1 Polarization: -2.10 SS G_CDS: -3.76 Total: -5.87 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: -1.94 Total: -16.40 kcal Atomic # 7 Polarization: -32.07 SS G_CDS: 1.13 Total: -30.93 kcal Atomic # 8 Polarization: -6.79 SS G_CDS: 0.29 Total: -6.49 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -33.19 -5.18 -38.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259528191.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.975 kcal (2) G-P(sol) polarization free energy of solvation -33.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds