Wall clock time and date at job start Mon Mar 30 2020 03:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35276 * 126.64378 * 2 1 4 4 C 1.42443 * 103.91118 * 179.97438 * 3 2 1 5 5 C 1.47762 * 126.95965 * 179.97438 * 4 3 2 6 6 O 1.20825 * 120.00219 * 359.97438 * 5 4 3 7 7 C 1.50698 * 119.99818 * 180.02562 * 5 4 3 8 8 C 1.53006 * 109.47184 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47127 * 179.97438 * 8 7 5 10 10 C 1.50696 * 109.47055 * 179.97438 * 9 8 7 11 11 H 1.08000 * 120.00290 * 0.02562 * 10 9 8 12 12 C 1.37887 * 120.00079 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99685 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00129 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.46879 * 60.00177 * 14 12 10 16 16 H 1.48494 * 109.47196 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47151 * 300.00589 * 14 12 10 18 18 N 1.31158 * 106.07251 * 0.22519 * 4 3 2 19 19 O 1.20901 * 111.39837 * 359.60373 * 18 4 3 20 20 H 1.08997 * 109.46952 * 89.99379 * 1 2 3 21 21 H 1.08991 * 109.47045 * 209.99543 * 1 2 3 22 22 H 1.09000 * 109.46721 * 330.00290 * 1 2 3 23 23 H 1.08003 * 128.04058 * 359.96108 * 3 2 1 24 24 H 1.09001 * 109.47612 * 59.99821 * 7 5 4 25 25 H 1.09001 * 109.47122 * 299.99652 * 7 5 4 26 26 H 1.09001 * 109.47002 * 299.99404 * 8 7 5 27 27 H 1.08993 * 109.46955 * 59.99842 * 8 7 5 28 28 H 1.09001 * 109.47289 * 299.99953 * 9 8 7 29 29 H 1.09004 * 109.47261 * 59.99697 * 9 8 7 30 30 H 0.96999 * 119.99910 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3144 1.0854 0.0000 4 6 3.6282 0.5350 0.0006 5 6 4.9038 1.2806 0.0003 6 8 4.8974 2.4889 -0.0009 7 6 6.2129 0.5341 0.0005 8 6 7.3706 1.5346 -0.0005 9 6 8.6996 0.7767 0.0003 10 6 9.8398 1.7620 -0.0013 11 1 9.6368 2.8228 -0.0023 12 6 11.1423 1.3094 -0.0003 13 7 11.3894 0.0177 0.0014 14 14 12.5556 2.5308 -0.0016 15 1 12.4720 3.3857 1.2098 16 1 13.8455 1.7952 -0.0009 17 1 12.4726 3.3827 -1.2152 18 7 3.4761 -0.7678 -0.0040 19 8 2.3068 -1.0754 0.0005 20 1 -0.3633 0.0001 -1.0276 21 1 -0.3633 -0.8900 0.5137 22 1 -0.3633 0.8900 0.5138 23 1 2.0291 2.1271 -0.0006 24 1 6.2741 -0.0925 -0.8893 25 1 6.2741 -0.0919 0.8907 26 1 7.3093 2.1602 -0.8909 27 1 7.3097 2.1615 0.8890 28 1 8.7607 0.1512 0.8910 29 1 8.7608 0.1493 -0.8890 30 1 12.3056 -0.3008 0.0017 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259528191.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:07 Heat of formation + Delta-G solvation = -17.130371 kcal Electronic energy + Delta-G solvation = -14216.080455 eV Core-core repulsion = 11592.558282 eV Total energy + Delta-G solvation = -2623.522173 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -46.16317 -40.74262 -36.25013 -35.22002 -34.48070 -33.97473 -30.18038 -28.69765 -26.96639 -24.82016 -23.73814 -21.99957 -20.22390 -18.95440 -18.50552 -18.42192 -17.18203 -16.73416 -16.48989 -15.98070 -15.02247 -15.00965 -14.49937 -14.32897 -13.94304 -13.80458 -13.33308 -13.22279 -12.67153 -12.57993 -12.47691 -12.41001 -11.67681 -11.66241 -11.54365 -11.37056 -10.92490 -10.57382 -10.40889 -8.22418 -6.33849 -0.22958 0.58102 1.38405 1.41984 1.50111 1.65857 2.00767 2.38539 2.49273 3.10294 3.11706 3.81191 3.92078 4.01233 4.11824 4.22080 4.39186 4.70749 4.78302 4.82539 4.84172 4.86627 5.01073 5.11393 5.25480 5.47700 5.67096 5.81078 6.13984 6.22157 6.81517 7.01680 7.35126 8.89269 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.082781 B = 0.004350 C = 0.004152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 338.161803 B = 6434.805909 C = 6741.916959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.018 4.018 3 C -0.206 4.206 4 C -0.081 4.081 5 C 0.445 3.555 6 O -0.458 6.458 7 C -0.151 4.151 8 C -0.089 4.089 9 C 0.025 3.975 10 C -0.550 4.550 11 H 0.056 0.944 12 C 0.001 3.999 13 N -0.931 5.931 14 Si 0.967 3.033 15 H -0.267 1.267 16 H -0.279 1.279 17 H -0.267 1.267 18 N -0.339 5.339 19 O 0.130 5.870 20 H 0.109 0.891 21 H 0.102 0.898 22 H 0.112 0.888 23 H 0.194 0.806 24 H 0.105 0.895 25 H 0.105 0.895 26 H 0.049 0.951 27 H 0.049 0.951 28 H -0.002 1.002 29 H -0.002 1.002 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.766 -0.685 0.001 23.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.080 4.080 3 C -0.228 4.228 4 C -0.236 4.236 5 C 0.320 3.680 6 O -0.329 6.329 7 C -0.188 4.188 8 C -0.126 4.126 9 C -0.012 4.012 10 C -0.588 4.588 11 H 0.075 0.925 12 C -0.197 4.197 13 N -0.571 5.571 14 Si 0.791 3.209 15 H -0.192 1.192 16 H -0.204 1.204 17 H -0.192 1.192 18 N -0.038 5.038 19 O 0.049 5.951 20 H 0.127 0.873 21 H 0.121 0.879 22 H 0.131 0.869 23 H 0.211 0.789 24 H 0.123 0.877 25 H 0.123 0.877 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.016 0.984 29 H 0.016 0.984 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -22.678 -1.121 -0.005 22.705 hybrid contribution 0.868 0.992 -0.002 1.318 sum -21.810 -0.129 -0.007 21.810 Atomic orbital electron populations 1.20677 0.79564 1.06637 1.06006 1.25326 0.98216 0.84008 1.00499 1.22853 0.89171 1.02884 1.07924 1.24207 0.98337 0.91153 1.09907 1.21726 0.88444 0.87942 0.69842 1.90402 1.89391 1.16577 1.36568 1.22004 0.91530 0.99869 1.05433 1.21272 0.93420 0.96994 1.00942 1.19011 0.91836 0.95024 0.95373 1.21661 0.92342 0.93691 1.51074 0.92525 1.25989 1.01973 0.97232 0.94540 1.70082 1.20930 1.14754 1.51375 0.85480 0.77600 0.78667 0.79190 1.19211 1.20445 1.19220 1.74295 0.97980 1.15771 1.15770 1.84765 1.10889 1.34458 1.64949 0.87318 0.87917 0.86916 0.78891 0.87689 0.87681 0.93197 0.93200 0.98373 0.98380 0.92614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.33 10.44 71.24 0.74 0.42 16 2 C -0.02 -0.28 7.47 25.00 0.19 -0.09 16 3 C -0.21 -4.36 10.92 22.63 0.25 -4.11 16 4 C -0.08 -2.35 7.12 42.81 0.30 -2.05 16 5 C 0.44 15.29 7.16 28.21 0.20 15.50 16 6 O -0.46 -17.58 16.56 -1.65 -0.03 -17.61 16 7 C -0.15 -5.58 5.51 29.85 0.16 -5.42 16 8 C -0.09 -4.01 4.44 30.60 0.14 -3.88 16 9 C 0.02 1.36 4.97 29.85 0.15 1.51 16 10 C -0.55 -32.86 9.11 25.60 0.23 -32.63 16 11 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 12 C 0.00 0.03 5.46 84.66 0.46 0.50 16 13 N -0.93 -57.94 13.29 21.45 0.28 -57.65 16 14 Si 0.97 45.62 29.54 68.60 2.03 47.64 16 15 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 16 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 17 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 18 N -0.34 -9.60 11.98 -49.59 -0.59 -10.19 16 19 O 0.13 2.83 11.17 71.85 0.80 3.63 16 20 H 0.11 0.19 8.14 -2.39 -0.02 0.18 16 21 H 0.10 0.20 8.14 -2.39 -0.02 0.18 16 22 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 23 H 0.19 3.32 8.06 -2.91 -0.02 3.29 16 24 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 25 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 26 H 0.05 2.28 8.10 -2.39 -0.02 2.26 16 27 H 0.05 2.28 8.10 -2.39 -0.02 2.26 16 28 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 29 H 0.00 -0.13 8.14 -2.38 -0.02 -0.15 16 30 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -72.43 273.76 6.45 -65.98 By element: Atomic # 1 Polarization: -2.67 SS G_CDS: 1.13 Total: -1.54 kcal Atomic # 6 Polarization: -33.09 SS G_CDS: 2.83 Total: -30.26 kcal Atomic # 7 Polarization: -67.54 SS G_CDS: -0.31 Total: -67.84 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: 0.78 Total: -13.97 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.64 kcal Total: -72.43 6.45 -65.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259528191.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.851 kcal (2) G-P(sol) polarization free energy of solvation -72.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds