Wall clock time and date at job start Mon Mar 30 2020 02:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 11 11 N 1.46901 * 109.46921 * 179.97438 * 9 7 2 12 12 C 1.48537 * 110.99979 * 57.60379 * 11 9 7 13 13 C 1.54941 * 103.22540 * 159.71859 * 12 11 9 14 14 C 1.54598 * 102.92305 * 322.58295 * 13 12 11 15 15 C 1.47903 * 111.00021 * 174.99791 * 11 9 7 16 16 C 1.53002 * 109.47419 * 59.99898 * 9 7 2 17 17 F 1.39895 * 109.47052 * 59.99488 * 16 9 7 18 18 F 1.39889 * 109.47380 * 180.02562 * 16 9 7 19 19 F 1.39906 * 109.46680 * 300.00098 * 16 9 7 20 20 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 21 21 H 1.08997 * 110.66856 * 278.15650 * 12 11 9 22 22 H 1.09006 * 110.66318 * 41.28375 * 12 11 9 23 23 H 1.09006 * 110.72051 * 204.22962 * 13 12 11 24 24 H 1.08991 * 110.72522 * 80.94448 * 13 12 11 25 25 H 1.08995 * 110.31226 * 263.04726 * 14 13 12 26 26 H 1.09002 * 110.30777 * 140.87259 * 14 13 12 27 27 H 1.09005 * 109.91351 * 333.51157 * 15 11 9 28 28 H 1.09003 * 109.91810 * 94.80143 * 15 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.6239 -2.5567 0.8903 11 7 2.2055 -3.6157 0.0005 12 6 3.1161 -3.5375 1.1714 13 6 3.6498 -4.9862 1.3029 14 6 2.4146 -5.8436 0.9431 15 6 1.5044 -4.9125 0.1209 16 6 0.3717 -2.5805 -1.2490 17 9 1.1764 -2.5066 -2.3910 18 9 -0.3282 -3.7917 -1.2487 19 9 -0.5374 -1.5171 -1.2495 20 1 -0.4850 0.8401 0.0004 21 1 3.9332 -2.8427 0.9776 22 1 2.5670 -3.2470 2.0671 23 1 3.9741 -5.1866 2.3241 24 1 4.4613 -5.1638 0.5974 25 1 1.9033 -6.1692 1.8489 26 1 2.7131 -6.7050 0.3456 27 1 0.5534 -4.7740 0.6352 28 1 1.3361 -5.3369 -0.8689 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259551669.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:27 Heat of formation + Delta-G solvation = -150.728593 kcal Electronic energy + Delta-G solvation = -16707.971018 eV Core-core repulsion = 13536.798851 eV Total energy + Delta-G solvation = -3171.172167 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.088 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -50.42355 -48.05608 -47.70316 -39.66598 -35.45565 -33.05117 -29.79028 -28.93713 -26.49114 -23.48294 -21.83610 -21.64661 -19.26097 -18.80648 -18.36611 -17.61309 -16.90266 -16.46651 -15.87821 -15.05387 -14.90799 -14.72703 -14.45190 -14.33654 -14.16291 -13.96688 -13.76906 -13.48929 -13.10200 -12.77784 -12.50523 -12.36700 -12.04928 -11.85067 -11.73639 -11.39168 -11.20819 -10.64710 -9.28018 -8.18407 -6.43432 1.42785 1.44929 1.55362 2.35762 2.47538 2.94294 3.10897 3.72885 3.83811 3.86460 4.03709 4.14683 4.36016 4.47658 4.71873 4.76277 4.90685 4.98241 5.05826 5.17080 5.26010 5.38076 5.59178 5.70147 6.04147 6.31216 6.65252 7.25801 8.74775 Molecular weight = 223.09amu Principal moments of inertia in cm(-1) A = 0.029840 B = 0.013484 C = 0.010298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.119541 B = 2076.043038 C = 2718.211823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.010 3.990 3 Si 0.975 3.025 4 H -0.278 1.278 5 H -0.279 1.279 6 H -0.260 1.260 7 C -0.537 4.537 8 H 0.076 0.924 9 C 0.183 3.817 10 H 0.011 0.989 11 N -0.525 5.525 12 C 0.051 3.949 13 C -0.114 4.114 14 C -0.121 4.121 15 C 0.023 3.977 16 C 0.433 3.567 17 F -0.202 7.202 18 F -0.219 7.219 19 F -0.153 7.153 20 H 0.265 0.735 21 H 0.074 0.926 22 H 0.032 0.968 23 H 0.094 0.906 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.029 0.971 28 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.214 -7.112 2.469 8.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.194 4.194 3 Si 0.799 3.201 4 H -0.204 1.204 5 H -0.204 1.204 6 H -0.184 1.184 7 C -0.574 4.574 8 H 0.094 0.906 9 C 0.073 3.927 10 H 0.028 0.972 11 N -0.250 5.250 12 C -0.076 4.076 13 C -0.152 4.152 14 C -0.159 4.159 15 C -0.105 4.105 16 C 0.378 3.622 17 F -0.184 7.184 18 F -0.201 7.201 19 F -0.134 7.134 20 H 0.075 0.925 21 H 0.093 0.907 22 H 0.051 0.949 23 H 0.112 0.888 24 H 0.097 0.903 25 H 0.096 0.904 26 H 0.106 0.894 27 H 0.047 0.953 28 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.295 -6.955 1.960 8.406 hybrid contribution -0.849 0.964 0.215 1.303 sum 3.446 -5.990 2.175 7.245 Atomic orbital electron populations 1.70504 1.07187 1.27691 1.46053 1.25981 0.95938 1.03472 0.93995 0.85286 0.78742 0.77789 0.78294 1.20395 1.20415 1.18355 1.21051 0.93980 0.88673 1.53661 0.90604 1.20251 0.90765 0.93145 0.88574 0.97154 1.64594 1.17492 1.00828 1.42069 1.23059 0.95656 0.98464 0.90409 1.22512 0.97623 0.92297 1.02728 1.22398 0.95693 0.97953 0.99815 1.23113 0.96346 0.90785 1.00256 1.22631 0.79982 0.72131 0.87505 1.92987 1.74341 1.96090 1.54964 1.93001 1.81694 1.48390 1.97043 1.93381 1.68998 1.54658 1.96379 0.92486 0.90734 0.94931 0.88788 0.90333 0.90365 0.89421 0.95285 0.91440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.78 9.50 21.45 0.20 -49.58 15 2 C 0.01 0.54 5.20 84.66 0.44 0.98 15 3 Si 0.97 42.61 29.54 68.60 2.03 44.64 15 4 H -0.28 -12.15 7.11 99.48 0.71 -11.44 15 5 H -0.28 -11.83 7.11 99.48 0.71 -11.13 15 6 H -0.26 -10.77 7.11 99.48 0.71 -10.07 15 7 C -0.54 -28.88 7.80 25.60 0.20 -28.68 15 8 H 0.08 4.00 6.81 -2.91 -0.02 3.99 15 9 C 0.18 9.37 1.47 44.17 0.06 9.43 15 10 H 0.01 0.61 7.96 -2.39 -0.02 0.59 15 11 N -0.52 -22.76 5.02 -862.18 -4.33 -27.09 15 12 C 0.05 1.88 5.69 86.65 0.49 2.38 15 13 C -0.11 -3.02 7.06 31.80 0.22 -2.80 15 14 C -0.12 -3.23 6.93 31.47 0.22 -3.01 15 15 C 0.02 0.85 5.02 86.45 0.43 1.29 15 16 C 0.43 22.72 2.75 71.98 0.20 22.92 15 17 F -0.20 -10.70 16.94 44.97 0.76 -9.94 15 18 F -0.22 -10.50 14.32 44.97 0.64 -9.86 15 19 F -0.15 -8.71 12.91 44.97 0.58 -8.13 15 20 H 0.27 14.26 8.31 -92.71 -0.77 13.49 15 21 H 0.07 2.80 7.32 -2.39 -0.02 2.78 15 22 H 0.03 1.24 8.02 -2.38 -0.02 1.22 15 23 H 0.09 1.98 8.14 -2.38 -0.02 1.96 15 24 H 0.08 1.97 8.14 -2.39 -0.02 1.95 15 25 H 0.08 1.84 8.14 -2.39 -0.02 1.82 15 26 H 0.09 1.98 8.14 -2.39 -0.02 1.96 15 27 H 0.03 1.14 7.06 -2.38 -0.02 1.12 15 28 H 0.07 2.53 7.54 -2.39 -0.02 2.51 15 Total: -1.00 -60.01 237.06 3.32 -56.69 By element: Atomic # 1 Polarization: -0.40 SS G_CDS: 1.16 Total: 0.76 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: 2.27 Total: 2.50 kcal Atomic # 7 Polarization: -72.55 SS G_CDS: -4.13 Total: -76.67 kcal Atomic # 9 Polarization: -29.91 SS G_CDS: 1.99 Total: -27.92 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -60.01 3.32 -56.69 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259551669.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.036 kcal (2) G-P(sol) polarization free energy of solvation -60.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds