Wall clock time and date at job start Mon Mar 30 2020 02:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 11 11 N 1.46900 * 109.46780 * 299.72183 * 9 7 2 12 12 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 13 13 H 1.09004 * 109.47066 * 299.99797 * 12 9 7 14 14 O 1.42896 * 109.47233 * 59.99463 * 12 9 7 15 15 C 1.50697 * 109.47491 * 179.97438 * 12 9 7 16 16 C 1.38262 * 119.94006 * 279.73040 * 15 12 9 17 17 C 1.38152 * 120.05366 * 179.72443 * 16 15 12 18 18 C 1.38732 * 119.94127 * 0.54330 * 17 16 15 19 19 O 1.35903 * 120.05641 * 179.75442 * 18 17 16 20 20 C 1.38728 * 119.88910 * 359.72430 * 18 17 16 21 21 C 1.38149 * 119.94721 * 0.02562 * 20 18 17 22 22 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 23 23 H 1.00907 * 110.99792 * 176.04814 * 11 9 7 24 24 H 1.00903 * 111.00086 * 299.99570 * 11 9 7 25 25 H 0.96701 * 114.00043 * 60.00489 * 14 12 9 26 26 H 1.08003 * 119.97553 * 359.97438 * 16 15 12 27 27 H 1.07998 * 120.02732 * 180.27094 * 17 16 15 28 28 H 0.96699 * 113.99203 * 269.97648 * 19 18 17 29 29 H 1.08008 * 120.02828 * 179.97438 * 20 18 17 30 30 H 1.07996 * 119.97371 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6244 -2.5529 -0.8956 11 7 0.4063 -2.5823 1.1937 12 6 2.2451 -3.6622 -0.0104 13 1 2.8718 -3.6005 -0.9002 14 8 3.0666 -3.5917 1.1566 15 6 1.4916 -4.9672 -0.0157 16 6 0.9715 -5.4685 1.1632 17 6 0.2754 -6.6619 1.1602 18 6 0.1083 -7.3629 -0.0253 19 8 -0.5717 -8.5396 -0.0301 20 6 0.6359 -6.8605 -1.2058 21 6 1.3267 -5.6642 -1.1984 22 1 -0.4850 0.8401 -0.0004 23 1 -0.1577 -3.4189 1.1814 24 1 0.9642 -2.5347 2.0330 25 1 2.5745 -3.6407 1.9876 26 1 1.1060 -4.9247 2.0866 27 1 -0.1344 -7.0508 2.0805 28 1 -0.0152 -9.3160 0.1198 29 1 0.5075 -7.4047 -2.1299 30 1 1.7373 -5.2725 -2.1173 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259610972.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:10 Heat of formation + Delta-G solvation = -91.937089 kcal Electronic energy + Delta-G solvation = -15152.726178 eV Core-core repulsion = 12525.960142 eV Total energy + Delta-G solvation = -2626.766036 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.01566 -39.13406 -37.00557 -35.27351 -33.25405 -32.06181 -30.98819 -28.64733 -26.41147 -23.71940 -23.16455 -21.56042 -19.39777 -18.76101 -17.85190 -16.98485 -16.77709 -16.41845 -16.22845 -15.92720 -15.08780 -14.90667 -14.41970 -14.05711 -13.90317 -13.25984 -13.08874 -12.88554 -12.72017 -12.58298 -12.33839 -11.99854 -11.39125 -11.19768 -10.87667 -10.53257 -9.96692 -9.48046 -8.76914 -7.96344 -6.16484 0.24679 0.37840 1.43566 1.45280 1.55062 2.47654 2.65837 3.26031 3.29744 3.68287 3.84012 3.88849 4.05342 4.31475 4.40490 4.50719 4.67855 4.78736 4.92099 5.05820 5.29353 5.38382 5.42680 5.67482 5.79530 5.86598 6.18696 6.65315 6.80655 6.87815 7.12519 7.26369 7.55622 9.07060 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.054902 B = 0.006751 C = 0.006645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.873104 B = 4146.658105 C = 4212.926555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.033 3.967 3 Si 0.948 3.052 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.541 4.541 8 H 0.049 0.951 9 C 0.210 3.790 10 H 0.008 0.992 11 N -0.819 5.819 12 C 0.120 3.880 13 H 0.087 0.913 14 O -0.559 6.559 15 C -0.126 4.126 16 C -0.106 4.106 17 C -0.143 4.143 18 C 0.095 3.905 19 O -0.506 6.506 20 C -0.145 4.145 21 C -0.108 4.108 22 H 0.254 0.746 23 H 0.313 0.687 24 H 0.322 0.678 25 H 0.370 0.630 26 H 0.130 0.870 27 H 0.148 0.852 28 H 0.409 0.591 29 H 0.146 0.854 30 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.708 -14.854 1.329 15.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.171 4.171 3 Si 0.774 3.226 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.580 4.580 8 H 0.067 0.933 9 C 0.099 3.901 10 H 0.026 0.974 11 N -0.351 5.351 12 C 0.059 3.941 13 H 0.105 0.895 14 O -0.365 6.365 15 C -0.126 4.126 16 C -0.124 4.124 17 C -0.161 4.161 18 C 0.051 3.949 19 O -0.319 6.319 20 C -0.164 4.164 21 C -0.127 4.127 22 H 0.062 0.938 23 H 0.126 0.874 24 H 0.135 0.865 25 H 0.219 0.781 26 H 0.148 0.852 27 H 0.166 0.834 28 H 0.268 0.732 29 H 0.164 0.836 30 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.192 -13.674 0.521 13.736 hybrid contribution 0.746 -0.108 0.513 0.912 sum 1.937 -13.782 1.034 13.956 Atomic orbital electron populations 1.70242 1.07024 1.26202 1.48424 1.25676 0.95374 1.01825 0.94180 0.85748 0.78729 0.80130 0.77963 1.20360 1.21218 1.19705 1.21163 0.92289 0.91328 1.53191 0.93318 1.19338 0.89079 0.91524 0.90139 0.97422 1.58877 1.28482 1.43605 1.04089 1.21635 0.92717 0.91313 0.88429 0.89510 1.86536 1.37249 1.96689 1.16028 1.20809 0.99906 0.97000 0.94919 1.20920 0.97684 0.96115 0.97681 1.21560 0.99835 0.95976 0.98751 1.18523 0.94857 0.88998 0.92571 1.84780 1.37392 1.15056 1.94693 1.21574 0.98467 0.97225 0.99088 1.21073 0.99032 0.94711 0.97839 0.93750 0.87393 0.86489 0.78139 0.85194 0.83444 0.73159 0.83576 0.85070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -52.20 12.78 21.45 0.27 -51.93 16 2 C 0.03 1.83 5.39 84.66 0.46 2.29 16 3 Si 0.95 44.44 29.54 68.60 2.03 46.46 16 4 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 5 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 6 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 7 C -0.54 -29.85 8.39 25.60 0.21 -29.63 16 8 H 0.05 2.73 7.70 -2.91 -0.02 2.70 16 9 C 0.21 10.23 2.54 44.17 0.11 10.34 16 10 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 11 N -0.82 -37.05 7.99 -171.81 -1.37 -38.43 16 12 C 0.12 4.84 3.05 29.85 0.09 4.94 16 13 H 0.09 3.60 8.00 -2.38 -0.02 3.58 16 14 O -0.56 -21.95 12.73 -148.98 -1.90 -23.85 16 15 C -0.13 -4.23 4.72 -19.85 -0.09 -4.32 16 16 C -0.11 -3.08 7.35 22.26 0.16 -2.91 16 17 C -0.14 -3.63 9.99 22.37 0.22 -3.40 16 18 C 0.09 2.38 6.70 22.51 0.15 2.53 16 19 O -0.51 -10.38 13.50 -92.46 -1.25 -11.63 16 20 C -0.15 -3.77 9.99 22.37 0.22 -3.55 16 21 C -0.11 -3.29 9.66 22.25 0.22 -3.08 16 22 H 0.25 14.39 8.31 -92.70 -0.77 13.62 16 23 H 0.31 12.71 6.63 -89.69 -0.59 12.11 16 24 H 0.32 13.43 7.50 -89.69 -0.67 12.76 16 25 H 0.37 12.33 5.99 -74.06 -0.44 11.88 16 26 H 0.13 3.45 6.33 -2.91 -0.02 3.43 16 27 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 28 H 0.41 3.99 9.06 -74.06 -0.67 3.31 16 29 H 0.15 3.08 8.06 -2.91 -0.02 3.05 16 30 H 0.13 3.72 8.03 -2.91 -0.02 3.70 16 Total: -1.00 -67.34 257.46 -1.64 -68.98 By element: Atomic # 1 Polarization: 38.38 SS G_CDS: -1.18 Total: 37.20 kcal Atomic # 6 Polarization: -28.57 SS G_CDS: 1.76 Total: -26.81 kcal Atomic # 7 Polarization: -89.25 SS G_CDS: -1.10 Total: -90.35 kcal Atomic # 8 Polarization: -32.33 SS G_CDS: -3.15 Total: -35.48 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Total: -67.34 -1.64 -68.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259610972.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.955 kcal (2) G-P(sol) polarization free energy of solvation -67.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds