Wall clock time and date at job start Mon Mar 30 2020 02:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 180.02562 * 7 2 1 10 10 H 1.09005 * 109.50139 * 300.07104 * 9 7 2 11 11 C 1.53112 * 109.50795 * 60.19496 * 9 7 2 12 12 C 1.53119 * 109.16147 * 177.59606 * 11 9 7 13 13 C 1.53034 * 109.27732 * 302.34437 * 12 11 9 14 14 N 1.46844 * 109.52466 * 59.17975 * 13 12 11 15 15 C 1.46849 * 111.19919 * 298.25672 * 14 13 12 16 16 H 1.08999 * 109.46610 * 301.72757 * 15 14 13 17 17 C 1.53001 * 109.46582 * 181.75582 * 15 14 13 18 18 F 1.39898 * 109.47008 * 299.95240 * 17 15 14 19 19 F 1.39896 * 109.46641 * 59.94820 * 17 15 14 20 20 F 1.39899 * 109.47227 * 179.97438 * 17 15 14 21 21 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 22 22 H 1.09003 * 109.52113 * 297.50107 * 11 9 7 23 23 H 1.09001 * 109.52691 * 57.68577 * 11 9 7 24 24 H 1.08996 * 109.50081 * 182.40549 * 12 11 9 25 25 H 1.08995 * 109.53618 * 62.30353 * 12 11 9 26 26 H 1.08999 * 109.46208 * 299.16244 * 13 12 11 27 27 H 1.08999 * 109.45320 * 179.19185 * 13 12 11 28 28 H 1.00900 * 111.00383 * 62.35140 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 1 3.8757 -0.6787 -0.8887 11 6 4.0223 -0.4777 1.2530 12 6 5.5522 -0.5347 1.2761 13 6 6.0039 -1.9964 1.2384 14 7 5.4906 -2.6374 0.0210 15 6 4.0223 -2.6368 -0.0007 16 1 3.6458 -3.1558 0.8807 17 6 3.5308 -3.3510 -1.2614 18 9 4.0134 -2.6848 -2.3929 19 9 3.9977 -4.6697 -1.2622 20 9 2.1319 -3.3510 -1.2820 21 1 -0.4850 0.8401 0.0004 22 1 3.6968 0.5625 1.2360 23 1 3.6260 -0.9698 2.1412 24 1 5.9202 -0.0635 2.1874 25 1 5.9497 -0.0085 0.4083 26 1 5.6182 -2.5184 2.1140 27 1 7.0930 -2.0399 1.2402 28 1 5.8646 -2.1957 -0.8055 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259667875.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:06 Heat of formation + Delta-G solvation = -156.409781 kcal Electronic energy + Delta-G solvation = -16697.236098 eV Core-core repulsion = 13525.817576 eV Total energy + Delta-G solvation = -3171.418522 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.088 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.25596 -46.79797 -46.66480 -38.47574 -33.17597 -31.58246 -30.85603 -26.15341 -24.53264 -22.39755 -21.21300 -19.89519 -17.56094 -17.42632 -17.23946 -16.81330 -14.97816 -14.50591 -14.36857 -13.74734 -13.61357 -13.47548 -13.17932 -13.09847 -12.92490 -12.81594 -12.46360 -11.96127 -11.79836 -11.37363 -11.27298 -10.79413 -10.52285 -10.28882 -9.97527 -9.68443 -8.98672 -8.62542 -8.03413 -6.12522 -4.14578 3.18890 3.30019 3.32617 3.55711 4.26305 4.33568 4.67887 4.88681 5.15531 5.20853 5.37030 5.43896 5.57094 5.74003 5.93746 5.99879 6.03953 6.29984 6.50007 6.57567 6.74824 7.00206 7.18674 7.50609 7.61980 8.38796 8.94995 9.47013 10.99117 Molecular weight = 223.09amu Principal moments of inertia in cm(-1) A = 0.026858 B = 0.015411 C = 0.011123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.257662 B = 1816.496979 C = 2516.641461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.078 3.922 3 Si 0.881 3.119 4 H -0.279 1.279 5 H -0.268 1.268 6 H -0.296 1.296 7 C -0.532 4.532 8 H 0.099 0.901 9 C -0.014 4.014 10 H 0.037 0.963 11 C -0.118 4.118 12 C -0.164 4.164 13 C 0.067 3.933 14 N -0.683 5.683 15 C 0.061 3.939 16 H 0.114 0.886 17 C 0.464 3.536 18 F -0.192 7.192 19 F -0.195 7.195 20 F -0.158 7.158 21 H 0.264 0.736 22 H 0.053 0.947 23 H 0.066 0.934 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.326 -3.031 0.925 10.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.125 4.125 3 Si 0.711 3.289 4 H -0.206 1.206 5 H -0.193 1.193 6 H -0.223 1.223 7 C -0.570 4.570 8 H 0.117 0.883 9 C -0.034 4.034 10 H 0.055 0.945 11 C -0.156 4.156 12 C -0.204 4.204 13 C -0.062 4.062 14 N -0.312 5.312 15 C -0.050 4.050 16 H 0.132 0.868 17 C 0.409 3.591 18 F -0.174 7.174 19 F -0.176 7.176 20 F -0.139 7.139 21 H 0.074 0.926 22 H 0.071 0.929 23 H 0.084 0.916 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.093 0.907 27 H 0.092 0.908 28 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 10.198 -3.600 1.151 10.876 hybrid contribution 0.073 1.958 -0.350 1.990 sum 10.270 -1.642 0.801 10.432 Atomic orbital electron populations 1.69882 1.06189 1.26937 1.49945 1.24965 0.94641 0.98675 0.94217 0.86952 0.79967 0.84151 0.77802 1.20627 1.19311 1.22324 1.21376 0.87800 0.95995 1.51793 0.88322 1.19824 0.98638 0.89991 0.94944 0.94498 1.21977 0.92428 1.00683 1.00503 1.22383 0.98470 0.97955 1.01564 1.21929 0.99117 0.92352 0.92810 1.60685 1.05937 1.58706 1.05914 1.22669 0.88701 0.99105 0.94540 0.86784 1.20409 0.76330 0.76522 0.85836 1.93087 1.88132 1.80686 1.55465 1.93119 1.88806 1.38785 1.96903 1.93232 1.28193 1.95997 1.96449 0.92555 0.92872 0.91558 0.92085 0.92462 0.90714 0.90826 0.83999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.74 13.96 55.43 0.77 -25.96 15 2 C 0.08 2.18 5.45 -17.82 -0.10 2.08 15 3 Si 0.88 21.39 24.36 -169.99 -4.14 17.25 15 4 H -0.28 -6.58 6.89 56.52 0.39 -6.19 15 5 H -0.27 -6.26 6.53 56.52 0.37 -5.89 15 6 H -0.30 -7.29 7.11 56.52 0.40 -6.89 15 7 C -0.53 -14.20 7.99 -34.44 -0.28 -14.47 15 8 H 0.10 2.84 5.76 -52.49 -0.30 2.53 15 9 C -0.01 -0.30 1.25 -91.69 -0.11 -0.41 15 10 H 0.04 0.86 6.83 -51.93 -0.35 0.51 15 11 C -0.12 -2.36 4.74 -26.61 -0.13 -2.49 15 12 C -0.16 -2.57 6.08 -26.65 -0.16 -2.73 15 13 C 0.07 0.94 6.55 -3.84 -0.03 0.92 15 14 N -0.68 -11.03 6.43 -106.76 -0.69 -11.72 15 15 C 0.06 1.17 2.04 -67.72 -0.14 1.03 15 16 H 0.11 2.17 8.14 -51.93 -0.42 1.75 15 17 C 0.46 9.30 2.80 37.16 0.10 9.40 15 18 F -0.19 -3.85 16.29 2.25 0.04 -3.82 15 19 F -0.19 -3.66 17.24 2.25 0.04 -3.62 15 20 F -0.16 -3.60 13.83 2.25 0.03 -3.56 15 21 H 0.26 7.47 8.31 -40.82 -0.34 7.13 15 22 H 0.05 1.15 3.37 -51.93 -0.18 0.97 15 23 H 0.07 1.31 8.14 -51.93 -0.42 0.88 15 24 H 0.06 0.84 8.14 -51.93 -0.42 0.41 15 25 H 0.06 0.89 8.14 -51.93 -0.42 0.47 15 26 H 0.07 1.03 8.14 -51.93 -0.42 0.60 15 27 H 0.07 0.86 8.14 -51.93 -0.42 0.44 15 28 H 0.34 5.35 8.34 -39.29 -0.33 5.02 15 LS Contribution 230.99 15.07 3.48 3.48 Total: -1.00 -28.69 230.99 -4.18 -32.87 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -2.88 Total: 1.76 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: -0.83 Total: -6.67 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: 0.09 Total: -37.68 kcal Atomic # 9 Polarization: -11.11 SS G_CDS: 0.11 Total: -11.00 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.14 Total: 17.25 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -28.69 -4.18 -32.87 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259667875.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.541 kcal (2) G-P(sol) polarization free energy of solvation -28.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds