Wall clock time and date at job start Mon Mar 30 2020 03:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.35503 * 126.06717 * 2 1 4 4 O 1.34224 * 107.22629 * 179.76240 * 3 2 1 5 5 C 1.34653 * 107.64233 * 0.42223 * 4 3 2 6 6 C 1.46597 * 125.72160 * 179.83858 * 5 4 3 7 7 O 1.21322 * 119.99788 * 179.69249 * 6 5 4 8 8 C 1.50703 * 120.00058 * 359.68966 * 6 5 4 9 9 C 1.53000 * 109.46912 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.46886 * 180.02562 * 9 8 6 11 11 C 1.50697 * 109.47291 * 179.97438 * 10 9 8 12 12 H 1.08006 * 119.99920 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00428 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99563 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00432 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47116 * 59.99479 * 15 13 11 17 17 H 1.48490 * 109.47381 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46756 * 300.00079 * 15 13 11 19 19 N 1.31561 * 108.55325 * 359.57311 * 5 4 3 20 20 H 1.09004 * 109.46699 * 269.99534 * 1 2 3 21 21 H 1.08997 * 109.47245 * 29.99464 * 1 2 3 22 22 H 1.08994 * 109.47013 * 149.99772 * 1 2 3 23 23 H 1.08000 * 126.38812 * 0.06296 * 3 2 1 24 24 H 1.09002 * 109.47152 * 60.00171 * 8 6 5 25 25 H 1.09001 * 109.46980 * 300.00272 * 8 6 5 26 26 H 1.09001 * 109.47194 * 299.99742 * 9 8 6 27 27 H 1.08992 * 109.47399 * 59.99914 * 9 8 6 28 28 H 1.09001 * 109.47109 * 299.99380 * 10 9 8 29 29 H 1.09002 * 109.47508 * 59.99571 * 10 9 8 30 30 H 0.97000 * 119.99425 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3048 1.0953 0.0000 4 8 3.5751 0.6619 0.0053 5 6 3.5470 -0.6844 -0.0009 6 6 4.7190 -1.5650 -0.0016 7 8 4.5728 -2.7693 -0.0019 8 6 6.1054 -0.9742 -0.0019 9 6 7.1401 -2.1013 -0.0032 10 6 8.5476 -1.5015 -0.0029 11 6 9.5667 -2.6116 -0.0035 12 1 9.2429 -3.6420 -0.0036 13 6 10.9126 -2.3120 -0.0039 14 7 11.3069 -1.0573 -0.0042 15 14 12.1758 -3.6881 -0.0054 16 1 11.9943 -4.5254 -1.2184 17 1 13.5419 -3.1060 -0.0049 18 1 11.9954 -4.5269 1.2067 19 7 2.2913 -1.0768 -0.0006 20 1 -0.3633 -0.0001 1.0277 21 1 -0.3633 0.8900 -0.5137 22 1 -0.3633 -0.8899 -0.5138 23 1 1.9793 2.1251 0.0010 24 1 6.2386 -0.3593 0.8882 25 1 6.2379 -0.3587 -0.8917 26 1 7.0077 -2.7170 0.8865 27 1 7.0068 -2.7158 -0.8934 28 1 8.6803 -0.8856 -0.8923 29 1 8.6806 -0.8871 0.8877 30 1 12.2537 -0.8466 -0.0048 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259699949.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:03 Heat of formation + Delta-G solvation = -55.393182 kcal Electronic energy + Delta-G solvation = -14227.722703 eV Core-core repulsion = 11602.541331 eV Total energy + Delta-G solvation = -2625.181373 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -44.53549 -40.61467 -36.54468 -36.11856 -34.09574 -32.79473 -30.41477 -28.50475 -26.56854 -24.72671 -22.61729 -22.16379 -20.88521 -18.64785 -18.34999 -18.08702 -17.10050 -16.51640 -16.50478 -16.22891 -15.34409 -14.90399 -14.32867 -14.21025 -14.08611 -13.76802 -13.16866 -13.10542 -12.63978 -12.54373 -12.45192 -12.24087 -11.82391 -11.67899 -11.57903 -11.33545 -11.01720 -10.52968 -9.92192 -8.19221 -6.29177 -0.49489 0.96436 1.40905 1.43298 1.43688 1.51781 1.73305 2.38970 2.46311 3.14069 3.58477 3.73491 3.84857 4.16036 4.19365 4.43852 4.64561 4.77265 4.77652 4.79630 4.87804 4.91103 5.06271 5.17848 5.30988 5.53588 5.74600 5.86638 6.02916 6.27454 6.52936 6.86352 7.39448 8.92134 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.082173 B = 0.004399 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 340.664338 B = 6364.160437 C = 6673.772983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.049 4.049 3 C -0.016 4.016 4 O -0.174 6.174 5 C 0.080 3.920 6 C 0.458 3.542 7 O -0.446 6.446 8 C -0.143 4.143 9 C -0.092 4.092 10 C 0.025 3.975 11 C -0.549 4.549 12 H 0.054 0.946 13 C 0.003 3.997 14 N -0.929 5.929 15 Si 0.961 3.039 16 H -0.269 1.269 17 H -0.280 1.280 18 H -0.269 1.269 19 N -0.449 5.449 20 H 0.087 0.913 21 H 0.111 0.889 22 H 0.066 0.934 23 H 0.279 0.721 24 H 0.121 0.879 25 H 0.121 0.879 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.003 0.997 29 H 0.003 0.997 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.898 8.216 -0.005 21.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.174 4.174 3 C -0.089 4.089 4 O -0.057 6.057 5 C -0.121 4.121 6 C 0.333 3.667 7 O -0.317 6.317 8 C -0.180 4.180 9 C -0.130 4.130 10 C -0.012 4.012 11 C -0.587 4.587 12 H 0.072 0.928 13 C -0.195 4.195 14 N -0.570 5.570 15 Si 0.786 3.214 16 H -0.194 1.194 17 H -0.205 1.205 18 H -0.194 1.194 19 N -0.185 5.185 20 H 0.106 0.894 21 H 0.130 0.870 22 H 0.085 0.915 23 H 0.294 0.706 24 H 0.139 0.861 25 H 0.139 0.861 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.021 0.979 29 H 0.021 0.979 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.871 7.032 -0.003 21.079 hybrid contribution 0.995 0.045 0.014 0.996 sum -18.877 7.078 0.011 20.160 Atomic orbital electron populations 1.20290 0.83287 1.04801 1.04190 1.22827 1.00396 0.87457 1.06739 1.26554 0.78657 1.03090 1.00591 1.84526 1.31863 1.22236 1.67056 1.26224 0.95259 0.80459 1.10118 1.21522 0.87911 0.86485 0.70782 1.90614 1.87897 1.16787 1.36404 1.22049 0.88698 1.00480 1.06773 1.21304 0.94150 0.96463 1.01061 1.19013 0.91063 0.95334 0.95809 1.21678 0.92315 0.93869 1.50801 0.92777 1.25904 1.00822 0.98059 0.94712 1.70063 1.16276 1.19086 1.51532 0.85557 0.77658 0.79115 0.79067 1.19409 1.20510 1.19421 1.70349 1.00983 1.33907 1.13256 0.89444 0.87038 0.91465 0.70576 0.86114 0.86107 0.93265 0.93251 0.97854 0.97862 0.92677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.80 10.43 71.24 0.74 -0.05 16 2 C -0.05 -0.99 7.10 41.72 0.30 -0.69 16 3 C -0.02 -0.25 12.11 67.19 0.81 0.56 16 4 O -0.17 -4.05 10.66 -5.17 -0.06 -4.11 16 5 C 0.08 2.41 7.97 86.92 0.69 3.10 16 6 C 0.46 15.48 7.13 27.87 0.20 15.68 16 7 O -0.45 -18.08 16.71 -3.16 -0.05 -18.13 16 8 C -0.14 -4.66 5.51 29.85 0.16 -4.49 16 9 C -0.09 -3.93 4.44 30.59 0.14 -3.79 16 10 C 0.02 1.30 4.97 29.85 0.15 1.45 16 11 C -0.55 -31.88 9.11 25.60 0.23 -31.65 16 12 H 0.05 3.08 7.74 -2.91 -0.02 3.06 16 13 C 0.00 0.18 5.46 84.65 0.46 0.64 16 14 N -0.93 -56.21 13.29 21.45 0.28 -55.93 16 15 Si 0.96 44.91 29.54 68.60 2.03 46.94 16 16 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 17 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 18 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 19 N -0.45 -13.67 11.25 -293.60 -3.30 -16.97 16 20 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 21 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 22 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.28 0.69 8.06 -2.91 -0.02 0.67 16 24 H 0.12 3.52 8.14 -2.39 -0.02 3.50 16 25 H 0.12 3.52 8.14 -2.39 -0.02 3.50 16 26 H 0.05 2.15 8.10 -2.39 -0.02 2.13 16 27 H 0.05 2.15 8.10 -2.39 -0.02 2.13 16 28 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 29 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 30 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -74.49 274.28 3.92 -70.57 By element: Atomic # 1 Polarization: -4.25 SS G_CDS: 1.13 Total: -3.12 kcal Atomic # 6 Polarization: -23.14 SS G_CDS: 3.89 Total: -19.25 kcal Atomic # 7 Polarization: -69.88 SS G_CDS: -3.02 Total: -72.90 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.11 Total: -22.24 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -74.49 3.92 -70.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259699949.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.178 kcal (2) G-P(sol) polarization free energy of solvation -74.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds