Wall clock time and date at job start Mon Mar 30 2020 02:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46931 * 111.00123 * 2 1 4 4 C 1.53168 * 109.30314 * 50.69329 * 3 2 1 5 5 C 1.52315 * 108.08671 * 50.29088 * 4 3 2 6 6 C 1.38569 * 123.71788 * 163.76348 * 5 4 3 7 7 C 1.39915 * 125.13201 * 0.08506 * 6 5 4 8 8 H 1.08005 * 119.99711 * 0.02562 * 7 6 5 9 9 C 1.40058 * 120.00434 * 180.02562 * 7 6 5 10 10 N 1.30877 * 120.00177 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00187 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47400 * 90.00127 * 11 9 7 13 13 H 1.48503 * 109.47048 * 210.00032 * 11 9 7 14 14 H 1.48493 * 109.47134 * 329.99816 * 11 9 7 15 15 S 1.75589 * 109.74328 * 180.02562 * 6 5 4 16 16 C 1.75443 * 91.10836 * 0.02562 * 15 6 5 17 17 C 1.35072 * 110.86404 * 359.96696 * 16 15 6 18 18 C 1.46883 * 111.00452 * 124.19193 * 2 1 3 19 19 H 1.08994 * 109.47290 * 59.99768 * 1 2 3 20 20 H 1.08996 * 109.47112 * 180.02562 * 1 2 3 21 21 H 1.09007 * 109.46676 * 300.00082 * 1 2 3 22 22 H 1.09005 * 109.49580 * 290.74908 * 3 2 1 23 23 H 1.08995 * 109.52811 * 170.66483 * 3 2 1 24 24 H 1.09003 * 109.73968 * 290.64590 * 4 3 2 25 25 H 1.08994 * 109.77912 * 169.96280 * 4 3 2 26 26 H 0.96994 * 120.00071 * 179.97438 * 10 9 7 27 27 H 1.07995 * 124.56607 * 179.97438 * 16 15 6 28 28 H 1.08991 * 109.62705 * 48.44633 * 18 2 1 29 29 H 1.08994 * 109.63068 * 169.02614 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3717 0.0000 4 6 1.3221 2.1726 1.1185 5 6 1.4251 1.3653 2.4061 6 6 1.2219 1.9006 3.6679 7 6 0.8971 3.2354 3.9335 8 1 0.7864 3.9365 3.1195 9 6 0.7157 3.6624 5.2550 10 7 0.8494 2.8128 6.2415 11 14 0.2814 5.4443 5.6096 12 1 -1.1952 5.6017 5.6183 13 1 0.8285 5.8330 6.9343 14 1 0.8658 6.3148 4.5580 15 16 1.4317 0.6508 4.8833 16 6 1.7850 -0.5412 3.6455 17 6 1.7353 0.0137 2.4150 18 6 1.9954 -0.7706 1.1342 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8901 22 1 1.7861 1.8418 -0.9609 23 1 3.0724 1.3486 0.1666 24 1 0.2736 2.3397 0.8717 25 1 1.8281 3.1299 1.2428 26 1 0.7241 3.1087 7.1567 27 1 2.0116 -1.5789 3.8410 28 1 1.4910 -1.7353 1.1871 29 1 3.0675 -0.9213 1.0084 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259754109.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:47 Heat of formation + Delta-G solvation = -6.553610 kcal Electronic energy + Delta-G solvation = -13344.323086 eV Core-core repulsion = 11164.012427 eV Total energy + Delta-G solvation = -2180.310659 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 223.073 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.30886 -36.57802 -35.26707 -32.64149 -30.29787 -28.26525 -26.61891 -25.63217 -22.41371 -21.78906 -19.56732 -18.37508 -16.96970 -16.89788 -16.32893 -15.67811 -15.42381 -14.89284 -14.23460 -13.96492 -13.63118 -13.30082 -13.27085 -13.09371 -12.70228 -12.56369 -12.28889 -12.06468 -11.96055 -11.71455 -11.55633 -11.17903 -10.78462 -9.26931 -9.18688 -8.76288 -8.48653 -6.41722 0.81955 1.34616 1.47983 1.51273 1.76227 2.06768 2.18614 2.27271 3.09088 3.22532 4.24315 4.30946 4.47678 4.51425 4.68716 4.72877 4.81001 4.82920 4.95060 5.01650 5.09065 5.14599 5.24440 5.41351 5.65166 5.88710 6.08143 6.18348 6.22611 6.37393 6.70042 6.72489 8.08065 Molecular weight = 223.07amu Principal moments of inertia in cm(-1) A = 0.037159 B = 0.010297 C = 0.008527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.337029 B = 2718.604930 C = 3282.932137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.531 5.531 3 C 0.063 3.937 4 C -0.046 4.046 5 C -0.340 4.340 6 C 0.007 3.993 7 C -0.419 4.419 8 H 0.094 0.906 9 C 0.012 3.988 10 N -0.813 5.813 11 Si 1.006 2.994 12 H -0.260 1.260 13 H -0.263 1.263 14 H -0.254 1.254 15 S 0.091 5.909 16 C -0.421 4.421 17 C -0.074 4.074 18 C 0.117 3.883 19 H 0.080 0.920 20 H 0.068 0.932 21 H 0.016 0.984 22 H 0.092 0.908 23 H 0.064 0.936 24 H 0.043 0.957 25 H 0.047 0.953 26 H 0.304 0.696 27 H 0.130 0.870 28 H 0.081 0.919 29 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.603 0.688 -5.334 5.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.252 5.252 3 C -0.065 4.065 4 C -0.087 4.087 5 C -0.347 4.347 6 C -0.112 4.112 7 C -0.454 4.454 8 H 0.112 0.888 9 C -0.205 4.205 10 N -0.441 5.441 11 Si 0.825 3.175 12 H -0.184 1.184 13 H -0.187 1.187 14 H -0.178 1.178 15 S 0.353 5.647 16 C -0.556 4.556 17 C -0.087 4.087 18 C -0.014 4.014 19 H 0.098 0.902 20 H 0.087 0.913 21 H 0.034 0.966 22 H 0.111 0.889 23 H 0.083 0.917 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.117 0.883 27 H 0.147 0.853 28 H 0.100 0.900 29 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.520 0.286 -3.975 4.020 hybrid contribution -0.307 0.843 -0.024 0.898 sum -0.828 1.129 -4.000 4.238 Atomic orbital electron populations 1.22372 0.87593 1.01857 1.00646 1.62544 1.08512 1.13714 1.40429 1.22129 0.98849 0.87831 0.97684 1.20491 0.98901 0.97030 0.92281 1.19372 1.27319 0.94445 0.93613 1.22079 0.97583 0.97076 0.94504 1.19406 1.38058 0.93809 0.94118 0.88786 1.27151 0.92696 1.05766 0.94874 1.68920 1.34700 1.38245 1.02186 0.84797 0.79452 0.74331 0.78927 1.18419 1.18724 1.17797 1.84296 1.72150 0.99111 1.09168 1.25508 1.27995 1.03556 0.98504 1.19964 0.99422 0.94053 0.95270 1.21229 1.00172 0.95391 0.84579 0.90161 0.91301 0.96572 0.88929 0.91716 0.93845 0.93472 0.88347 0.85252 0.90035 0.89988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.78 8.77 127.69 1.12 1.90 15 2 N -0.53 -18.42 5.21 -923.29 -4.81 -23.23 15 3 C 0.06 2.19 5.99 86.35 0.52 2.71 15 4 C -0.05 -1.93 4.95 30.42 0.15 -1.78 15 5 C -0.34 -16.93 5.10 -19.16 -0.10 -17.03 15 6 C 0.01 0.41 6.18 22.76 0.14 0.55 15 7 C -0.42 -21.91 8.97 23.12 0.21 -21.70 15 8 H 0.09 4.69 7.24 -2.91 -0.02 4.67 15 9 C 0.01 0.58 5.50 85.28 0.47 1.05 15 10 N -0.81 -40.67 10.62 21.86 0.23 -40.44 15 11 Si 1.01 36.20 29.56 68.60 2.03 38.23 15 12 H -0.26 -9.03 7.11 99.48 0.71 -8.33 15 13 H -0.26 -8.95 7.11 99.48 0.71 -8.24 15 14 H -0.25 -8.89 7.11 99.48 0.71 -8.18 15 15 S 0.09 4.81 20.20 -56.49 -1.14 3.67 15 16 C -0.42 -20.66 11.01 67.09 0.74 -19.92 15 17 C -0.07 -3.48 5.29 -19.93 -0.11 -3.59 15 18 C 0.12 4.40 5.98 86.11 0.51 4.91 15 19 H 0.08 2.23 8.14 -2.39 -0.02 2.21 15 20 H 0.07 2.05 8.04 -2.39 -0.02 2.04 15 21 H 0.02 0.63 5.50 -2.38 -0.01 0.61 15 22 H 0.09 2.66 8.14 -2.38 -0.02 2.64 15 23 H 0.06 2.26 8.04 -2.39 -0.02 2.24 15 24 H 0.04 1.79 6.92 -2.39 -0.02 1.77 15 25 H 0.05 1.97 7.84 -2.39 -0.02 1.96 15 26 H 0.30 13.60 8.30 -92.71 -0.77 12.83 15 27 H 0.13 5.82 8.06 -2.91 -0.02 5.79 15 28 H 0.08 2.84 7.99 -2.39 -0.02 2.82 15 29 H 0.08 2.91 8.14 -2.39 -0.02 2.89 15 Total: -1.00 -58.06 246.99 1.11 -56.95 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 1.14 Total: 17.73 kcal Atomic # 6 Polarization: -56.56 SS G_CDS: 3.66 Total: -52.90 kcal Atomic # 7 Polarization: -59.09 SS G_CDS: -4.58 Total: -63.67 kcal Atomic # 14 Polarization: 36.20 SS G_CDS: 2.03 Total: 38.23 kcal Atomic # 16 Polarization: 4.81 SS G_CDS: -1.14 Total: 3.67 kcal Total: -58.06 1.11 -56.95 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259754109.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.401 kcal (2) G-P(sol) polarization free energy of solvation -58.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds