Wall clock time and date at job start Mon Mar 30 2020 03:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.34482 * 126.16352 * 2 1 4 4 C 1.30259 * 108.69955 * 179.97438 * 3 2 1 5 5 C 1.50702 * 125.61611 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.47034 * 90.00599 * 5 4 3 7 7 O 1.20760 * 120.00305 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.99982 * 179.97438 * 6 5 4 9 9 C 1.50707 * 109.46930 * 179.97438 * 8 6 5 10 10 H 1.07999 * 119.99812 * 359.97438 * 9 8 6 11 11 C 1.37876 * 119.99747 * 180.02562 * 9 8 6 12 12 N 1.31516 * 120.00137 * 179.97438 * 11 9 8 13 13 Si 1.86801 * 120.00136 * 0.02562 * 11 9 8 14 14 H 1.48493 * 109.47202 * 90.00100 * 13 11 9 15 15 H 1.48503 * 109.47243 * 210.00467 * 13 11 9 16 16 H 1.48499 * 109.47199 * 329.99832 * 13 11 9 17 17 O 1.33966 * 108.76366 * 359.73796 * 4 3 2 18 18 C 1.34329 * 126.17137 * 180.02562 * 2 1 3 19 19 C 1.50706 * 126.43925 * 359.97438 * 18 2 1 20 20 H 1.09000 * 109.46956 * 269.99765 * 1 2 3 21 21 H 1.08998 * 109.47037 * 30.00089 * 1 2 3 22 22 H 1.09007 * 109.46788 * 149.99569 * 1 2 3 23 23 H 1.09004 * 109.46862 * 210.00042 * 5 4 3 24 24 H 1.08999 * 109.47505 * 330.00155 * 5 4 3 25 25 H 1.08992 * 109.47164 * 299.99402 * 8 6 5 26 26 H 1.09004 * 109.47239 * 60.00197 * 8 6 5 27 27 H 0.97000 * 120.00423 * 179.97438 * 12 11 9 28 28 H 1.09001 * 109.46953 * 90.00182 * 19 18 2 29 29 H 1.09000 * 109.47318 * 209.99779 * 19 18 2 30 30 H 1.09000 * 109.47161 * 330.00410 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3005 1.0857 0.0000 4 6 3.5431 0.6948 0.0006 5 6 4.7479 1.6001 0.0002 6 6 5.1493 1.9027 1.4209 7 8 4.5215 1.4322 2.3390 8 6 6.3341 2.7924 1.6959 9 6 6.5206 2.9346 3.1846 10 1 5.8482 2.4314 3.8636 11 6 7.5491 3.7079 3.6797 12 7 7.7117 3.8325 4.9789 13 14 8.7109 4.5800 2.5053 14 1 8.1776 5.9303 2.1932 15 1 10.0484 4.7099 3.1374 16 1 8.8303 3.7930 1.2517 17 8 3.5735 -0.6445 0.0067 18 6 2.2998 -1.0844 -0.0005 19 6 1.8494 -2.5226 -0.0006 20 1 -0.3633 0.0000 1.0277 21 1 -0.3633 0.8900 -0.5138 22 1 -0.3633 -0.8900 -0.5139 23 1 5.5731 1.1064 -0.5131 24 1 4.5040 2.5295 -0.5143 25 1 7.2292 2.3511 1.2578 26 1 6.1607 3.7747 1.2564 27 1 8.4354 4.3762 5.3272 28 1 1.7405 -2.8691 -1.0283 29 1 2.5903 -3.1354 0.5128 30 1 0.8916 -2.6034 0.5135 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259762056.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:51 Heat of formation + Delta-G solvation = -27.375743 kcal Electronic energy + Delta-G solvation = -14635.819430 eV Core-core repulsion = 12011.852984 eV Total energy + Delta-G solvation = -2623.966446 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.17459 -38.57898 -35.02577 -33.43631 -32.90197 -30.92809 -29.46906 -28.96390 -25.09160 -23.19136 -21.56367 -20.54326 -18.84051 -17.01006 -16.65006 -16.31902 -15.07125 -14.78520 -14.60867 -14.13508 -13.94974 -13.38449 -13.27608 -13.10163 -12.77270 -12.46714 -12.28678 -12.20591 -11.91143 -11.40572 -10.91972 -10.77503 -10.59935 -10.30625 -9.98072 -9.33014 -8.87020 -8.60965 -8.26451 -6.06551 -4.07536 1.56983 2.75150 2.79287 2.83490 3.26084 3.31945 3.34264 4.07471 4.38344 4.75058 4.78468 4.86609 5.06871 5.23516 5.26976 5.31231 5.44291 5.54279 5.55577 5.70392 5.76454 6.05201 6.20074 6.31029 6.50499 6.62220 6.87275 7.56303 7.93446 8.33571 8.53759 9.09290 9.51095 11.06532 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.055882 B = 0.005637 C = 0.005565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.934706 B = 4966.224464 C = 5030.422143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.015 4.015 3 N -0.477 5.477 4 C 0.217 3.783 5 C -0.085 4.085 6 C 0.365 3.635 7 O -0.439 6.439 8 C -0.056 4.056 9 C -0.523 4.523 10 H 0.089 0.911 11 C 0.070 3.930 12 N -0.897 5.897 13 Si 0.876 3.124 14 H -0.275 1.275 15 H -0.285 1.285 16 H -0.265 1.265 17 O -0.197 6.197 18 C -0.061 4.061 19 C -0.063 4.063 20 H 0.073 0.927 21 H 0.074 0.926 22 H 0.071 0.929 23 H 0.121 0.879 24 H 0.134 0.866 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.265 0.735 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.499 -8.970 -14.134 19.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.135 4.135 3 N -0.206 5.206 4 C 0.010 3.990 5 C -0.124 4.124 6 C 0.237 3.763 7 O -0.310 6.310 8 C -0.093 4.093 9 C -0.561 4.561 10 H 0.107 0.893 11 C -0.132 4.132 12 N -0.535 5.535 13 Si 0.703 3.297 14 H -0.200 1.200 15 H -0.211 1.211 16 H -0.189 1.189 17 O -0.085 6.085 18 C -0.114 4.114 19 C -0.120 4.120 20 H 0.092 0.908 21 H 0.093 0.907 22 H 0.090 0.910 23 H 0.139 0.861 24 H 0.152 0.848 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.883 -8.541 -13.486 18.775 hybrid contribution 1.009 -0.064 -0.553 1.153 sum -8.874 -8.606 -14.039 18.705 Atomic orbital electron populations 1.20076 0.86764 1.02913 1.02774 1.21486 0.97814 0.87843 1.06392 1.70306 1.00451 1.31220 1.18620 1.25673 0.95096 0.78896 0.99325 1.21002 0.91504 0.97837 1.02017 1.24650 0.85258 0.79177 0.87184 1.90340 1.49970 1.43440 1.47253 1.20031 0.92988 0.95587 1.00703 1.21008 1.15047 1.30959 0.89041 0.89326 1.24992 0.97163 0.96019 0.95042 1.69901 1.31926 1.39926 1.11750 0.86858 0.80750 0.80544 0.81566 1.20029 1.21133 1.18920 1.84357 1.30065 1.24107 1.69931 1.23087 0.81006 0.98121 1.09217 1.20205 1.01865 0.86655 1.03260 0.90802 0.90712 0.91014 0.86084 0.84825 0.92740 0.93089 0.92540 0.90178 0.90380 0.89267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.75 10.05 36.00 0.36 -0.39 16 2 C -0.02 -0.24 7.11 -82.81 -0.59 -0.83 16 3 N -0.48 -8.83 11.29 -7.36 -0.08 -8.91 16 4 C 0.22 3.90 6.84 -12.94 -0.09 3.81 16 5 C -0.09 -1.34 6.26 -29.04 -0.18 -1.52 16 6 C 0.36 7.74 7.14 -29.04 -0.21 7.53 16 7 O -0.44 -11.26 15.14 6.00 0.09 -11.17 16 8 C -0.06 -1.27 4.46 -29.03 -0.13 -1.40 16 9 C -0.52 -15.16 9.48 -34.44 -0.33 -15.49 16 10 H 0.09 2.92 7.00 -52.49 -0.37 2.56 16 11 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 12 N -0.90 -27.84 13.96 55.43 0.77 -27.07 16 13 Si 0.88 20.64 27.47 -169.99 -4.67 15.97 16 14 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 15 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.26 -5.72 6.54 56.52 0.37 -5.35 16 17 O -0.20 -3.44 10.78 5.36 0.06 -3.38 16 18 C -0.06 -0.91 7.39 -35.68 -0.26 -1.17 16 19 C -0.06 -0.59 10.04 36.01 0.36 -0.23 16 20 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 21 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 22 H 0.07 0.57 7.79 -51.93 -0.40 0.16 16 23 H 0.12 1.47 8.14 -51.93 -0.42 1.05 16 24 H 0.13 1.73 8.14 -51.93 -0.42 1.31 16 25 H 0.05 1.15 7.20 -51.93 -0.37 0.77 16 26 H 0.05 1.07 7.57 -51.93 -0.39 0.68 16 27 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.09 0.66 7.80 -51.93 -0.40 0.25 16 LS Contribution 268.14 15.07 4.04 4.04 Total: -1.00 -36.09 268.14 -4.60 -40.68 By element: Atomic # 1 Polarization: 1.25 SS G_CDS: -3.65 Total: -2.40 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: -1.16 Total: -7.77 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: 0.69 Total: -35.98 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: 0.15 Total: -14.55 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.67 Total: 15.97 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -36.09 -4.60 -40.68 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259762056.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.305 kcal (2) G-P(sol) polarization free energy of solvation -36.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds