Wall clock time and date at job start Mon Mar 30 2020 03:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.34482 * 126.16352 * 2 1 4 4 C 1.30259 * 108.69955 * 179.97438 * 3 2 1 5 5 C 1.50702 * 125.61611 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.47034 * 90.00599 * 5 4 3 7 7 O 1.20760 * 120.00305 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.99982 * 179.97438 * 6 5 4 9 9 C 1.50707 * 109.46930 * 179.97438 * 8 6 5 10 10 H 1.07999 * 119.99812 * 359.97438 * 9 8 6 11 11 C 1.37876 * 119.99747 * 180.02562 * 9 8 6 12 12 N 1.31516 * 120.00137 * 179.97438 * 11 9 8 13 13 Si 1.86801 * 120.00136 * 0.02562 * 11 9 8 14 14 H 1.48493 * 109.47202 * 90.00100 * 13 11 9 15 15 H 1.48503 * 109.47243 * 210.00467 * 13 11 9 16 16 H 1.48499 * 109.47199 * 329.99832 * 13 11 9 17 17 O 1.33966 * 108.76366 * 359.73796 * 4 3 2 18 18 C 1.34329 * 126.17137 * 180.02562 * 2 1 3 19 19 C 1.50706 * 126.43925 * 359.97438 * 18 2 1 20 20 H 1.09000 * 109.46956 * 269.99765 * 1 2 3 21 21 H 1.08998 * 109.47037 * 30.00089 * 1 2 3 22 22 H 1.09007 * 109.46788 * 149.99569 * 1 2 3 23 23 H 1.09004 * 109.46862 * 210.00042 * 5 4 3 24 24 H 1.08999 * 109.47505 * 330.00155 * 5 4 3 25 25 H 1.08992 * 109.47164 * 299.99402 * 8 6 5 26 26 H 1.09004 * 109.47239 * 60.00197 * 8 6 5 27 27 H 0.97000 * 120.00423 * 179.97438 * 12 11 9 28 28 H 1.09001 * 109.46953 * 90.00182 * 19 18 2 29 29 H 1.09000 * 109.47318 * 209.99779 * 19 18 2 30 30 H 1.09000 * 109.47161 * 330.00410 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3005 1.0857 0.0000 4 6 3.5431 0.6948 0.0006 5 6 4.7479 1.6001 0.0002 6 6 5.1493 1.9027 1.4209 7 8 4.5215 1.4322 2.3390 8 6 6.3341 2.7924 1.6959 9 6 6.5206 2.9346 3.1846 10 1 5.8482 2.4314 3.8636 11 6 7.5491 3.7079 3.6797 12 7 7.7117 3.8325 4.9789 13 14 8.7109 4.5800 2.5053 14 1 8.1776 5.9303 2.1932 15 1 10.0484 4.7099 3.1374 16 1 8.8303 3.7930 1.2517 17 8 3.5735 -0.6445 0.0067 18 6 2.2998 -1.0844 -0.0005 19 6 1.8494 -2.5226 -0.0006 20 1 -0.3633 0.0000 1.0277 21 1 -0.3633 0.8900 -0.5138 22 1 -0.3633 -0.8900 -0.5139 23 1 5.5731 1.1064 -0.5131 24 1 4.5040 2.5295 -0.5143 25 1 7.2292 2.3511 1.2578 26 1 6.1607 3.7747 1.2564 27 1 8.4354 4.3762 5.3272 28 1 1.7405 -2.8691 -1.0283 29 1 2.5903 -3.1354 0.5128 30 1 0.8916 -2.6034 0.5135 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259762056.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:51 Heat of formation + Delta-G solvation = -55.714554 kcal Electronic energy + Delta-G solvation = -14637.048293 eV Core-core repulsion = 12011.852984 eV Total energy + Delta-G solvation = -2625.195309 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -44.36863 -40.31062 -36.20910 -35.03969 -34.57573 -32.46320 -31.01949 -29.97166 -26.43147 -24.88826 -22.86198 -21.76331 -20.45505 -19.04667 -17.95681 -17.60783 -16.76239 -16.32704 -16.21243 -15.70545 -15.08983 -14.81542 -14.27908 -14.20065 -13.90157 -13.77697 -13.62025 -13.20173 -13.15691 -12.88689 -12.81119 -12.37949 -12.00765 -11.78243 -11.54922 -11.53708 -10.78458 -10.50321 -9.44514 -8.27000 -6.36563 0.38703 1.16144 1.42619 1.46993 1.56351 1.57937 1.69507 2.39895 2.95350 3.07353 3.28910 3.77366 3.86120 4.18434 4.31412 4.42444 4.53226 4.63559 4.69956 4.74360 4.80404 4.84317 4.96248 5.10017 5.12662 5.17255 5.43241 5.54306 6.24265 6.72284 6.76178 6.79442 7.27545 8.91004 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.055882 B = 0.005637 C = 0.005565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.934706 B = 4966.224464 C = 5030.422143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.044 4.044 3 N -0.506 5.506 4 C 0.189 3.811 5 C -0.070 4.070 6 C 0.366 3.634 7 O -0.500 6.500 8 C -0.060 4.060 9 C -0.545 4.545 10 H 0.022 0.978 11 C -0.001 4.001 12 N -0.958 5.958 13 Si 0.964 3.036 14 H -0.262 1.262 15 H -0.289 1.289 16 H -0.220 1.220 17 O -0.214 6.214 18 C -0.063 4.063 19 C -0.063 4.063 20 H 0.075 0.925 21 H 0.073 0.927 22 H 0.106 0.894 23 H 0.164 0.836 24 H 0.167 0.833 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.268 0.732 28 H 0.107 0.893 29 H 0.079 0.921 30 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.123 -9.221 -17.628 21.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.164 4.164 3 N -0.236 5.236 4 C -0.018 4.018 5 C -0.107 4.107 6 C 0.243 3.757 7 O -0.376 6.376 8 C -0.097 4.097 9 C -0.583 4.583 10 H 0.040 0.960 11 C -0.197 4.197 12 N -0.598 5.598 13 Si 0.784 3.216 14 H -0.187 1.187 15 H -0.215 1.215 16 H -0.142 1.142 17 O -0.102 6.102 18 C -0.116 4.116 19 C -0.119 4.119 20 H 0.093 0.907 21 H 0.092 0.908 22 H 0.125 0.875 23 H 0.182 0.818 24 H 0.184 0.816 25 H 0.105 0.895 26 H 0.100 0.900 27 H 0.076 0.924 28 H 0.126 0.874 29 H 0.098 0.902 30 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -9.526 -8.812 -17.018 21.401 hybrid contribution 0.784 -0.068 0.640 1.014 sum -8.742 -8.881 -16.378 20.580 Atomic orbital electron populations 1.20220 0.83991 1.04632 1.03363 1.22231 0.99751 0.87454 1.06946 1.70276 1.01337 1.32940 1.19057 1.26048 0.95656 0.79466 1.00617 1.20970 0.92353 0.99527 0.97862 1.25082 0.83880 0.77418 0.89353 1.90337 1.51701 1.45729 1.49788 1.20085 0.95238 0.97953 0.96416 1.21277 1.14212 1.30639 0.92122 0.95986 1.26235 0.99427 0.96811 0.97273 1.70115 1.33258 1.41456 1.14967 0.85499 0.76707 0.79534 0.79852 1.18715 1.21520 1.14236 1.84348 1.31582 1.24113 1.70115 1.24133 0.80010 1.00295 1.07133 1.20500 1.02747 0.83277 1.05369 0.90655 0.90813 0.87524 0.81825 0.81590 0.89518 0.89966 0.92372 0.87425 0.90185 0.86986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.32 10.05 71.24 0.72 -0.60 16 2 C -0.04 -1.34 7.11 41.26 0.29 -1.05 16 3 N -0.51 -18.55 11.29 -291.98 -3.30 -21.84 16 4 C 0.19 6.62 6.84 88.34 0.60 7.22 16 5 C -0.07 -2.02 6.26 29.10 0.18 -1.83 16 6 C 0.37 15.34 7.14 29.10 0.21 15.55 16 7 O -0.50 -26.82 15.14 -1.45 -0.02 -26.84 16 8 C -0.06 -2.61 4.46 29.10 0.13 -2.48 16 9 C -0.54 -32.57 9.48 25.60 0.24 -32.33 16 10 H 0.02 1.56 7.00 -2.91 -0.02 1.54 16 11 C 0.00 -0.09 5.47 84.65 0.46 0.38 16 12 N -0.96 -61.90 13.96 21.45 0.30 -61.60 16 13 Si 0.96 41.42 27.47 68.60 1.88 43.30 16 14 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 15 H -0.29 -12.52 7.11 99.48 0.71 -11.82 16 16 H -0.22 -7.87 6.54 99.48 0.65 -7.22 16 17 O -0.21 -7.30 10.78 -3.72 -0.04 -7.34 16 18 C -0.06 -1.79 7.39 24.79 0.18 -1.60 16 19 C -0.06 -1.00 10.04 71.24 0.72 -0.28 16 20 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 21 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 22 H 0.11 1.35 7.79 -2.38 -0.02 1.33 16 23 H 0.16 3.28 8.14 -2.39 -0.02 3.26 16 24 H 0.17 3.68 8.14 -2.39 -0.02 3.66 16 25 H 0.09 3.27 7.20 -2.39 -0.02 3.26 16 26 H 0.08 3.13 7.57 -2.39 -0.02 3.11 16 27 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 28 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.11 1.28 7.80 -2.39 -0.02 1.26 16 Total: -1.00 -86.15 268.14 3.65 -82.51 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: 1.08 Total: 8.85 kcal Atomic # 6 Polarization: -20.78 SS G_CDS: 3.74 Total: -17.04 kcal Atomic # 7 Polarization: -80.44 SS G_CDS: -3.00 Total: -83.44 kcal Atomic # 8 Polarization: -34.11 SS G_CDS: -0.06 Total: -34.17 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 1.88 Total: 43.30 kcal Total: -86.15 3.65 -82.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259762056.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.794 kcal (2) G-P(sol) polarization free energy of solvation -86.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds