Wall clock time and date at job start Mon Mar 30 2020 03:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.33511 * 126.29936 * 2 1 4 4 C 1.30718 * 109.05302 * 179.97438 * 3 2 1 5 5 O 1.33624 * 109.24433 * 359.97438 * 4 3 2 6 6 C 1.35429 * 107.67357 * 359.77246 * 5 4 3 7 7 C 1.41422 * 126.68426 * 180.25283 * 6 5 4 8 8 O 1.21423 * 119.99767 * 180.12764 * 7 6 5 9 9 C 1.50695 * 120.00236 * 0.12444 * 7 6 5 10 10 C 1.52995 * 109.47146 * 180.02562 * 9 7 6 11 11 C 1.53009 * 109.47080 * 180.02562 * 10 9 7 12 12 C 1.50700 * 109.46996 * 180.02562 * 11 10 9 13 13 H 1.07996 * 120.00325 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99791 * 180.02562 * 12 11 10 15 15 N 1.31515 * 119.99875 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00216 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46912 * 59.99631 * 16 14 12 18 18 H 1.48494 * 109.47385 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47078 * 300.00126 * 16 14 12 20 20 H 1.09001 * 109.46953 * 90.02600 * 1 2 3 21 21 H 1.09000 * 109.47318 * 210.02198 * 1 2 3 22 22 H 1.09000 * 109.47161 * 330.02829 * 1 2 3 23 23 H 1.08005 * 125.37589 * 179.97438 * 4 3 2 24 24 H 1.09001 * 109.47368 * 300.00186 * 9 7 6 25 25 H 1.08998 * 109.47019 * 60.00112 * 9 7 6 26 26 H 1.08996 * 109.47424 * 299.99650 * 10 9 7 27 27 H 1.08993 * 109.47435 * 60.00771 * 10 9 7 28 28 H 1.09002 * 109.46759 * 300.00313 * 11 10 9 29 29 H 1.08998 * 109.47273 * 59.99948 * 11 10 9 30 30 H 0.97006 * 119.99763 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2975 1.0760 0.0000 4 6 3.5459 0.6885 0.0006 5 8 3.5924 -0.6470 0.0015 6 6 2.3172 -1.1029 0.0066 7 6 1.9034 -2.4552 0.0143 8 8 0.7203 -2.7280 0.0160 9 6 2.9309 -3.5575 0.0203 10 6 2.2234 -4.9141 0.0274 11 6 3.2667 -6.0333 0.0342 12 6 2.5698 -7.3695 0.0405 13 1 1.4909 -7.4159 0.0403 14 6 3.3098 -8.5329 0.0478 15 7 4.6237 -8.4764 0.0486 16 14 2.4461 -10.1892 0.0564 17 1 1.5975 -10.3112 -1.1562 18 1 3.4586 -11.2754 0.0628 19 1 1.5954 -10.2975 1.2688 20 1 -0.3633 -0.0005 -1.0277 21 1 -0.3634 -0.8898 0.5142 22 1 -0.3633 0.8902 0.5134 23 1 4.4041 1.3441 0.0003 24 1 3.5544 -3.4780 -0.8702 25 1 3.5546 -3.4680 0.9097 26 1 1.5998 -4.9940 0.9177 27 1 1.6001 -5.0035 -0.8622 28 1 3.8908 -5.9536 -0.8559 29 1 3.8898 -5.9439 0.9240 30 1 5.1443 -9.2949 0.0534 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259834952.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:06 Heat of formation + Delta-G solvation = -32.995960 kcal Electronic energy + Delta-G solvation = -14460.879290 eV Core-core repulsion = 11836.669133 eV Total energy + Delta-G solvation = -2624.210156 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.62491 -39.31955 -35.55739 -34.22948 -32.16453 -31.82165 -29.07986 -27.36290 -24.65939 -23.34281 -21.74090 -20.42359 -19.64450 -17.42046 -17.08719 -16.36777 -15.99816 -15.10585 -15.02273 -14.46915 -14.09993 -13.49697 -13.22272 -13.14624 -12.40255 -12.26818 -11.84725 -11.39081 -11.29751 -11.08100 -10.79639 -10.63550 -10.58345 -9.88348 -9.70782 -9.27977 -9.10216 -9.02042 -8.32379 -5.97928 -3.99834 0.45066 2.16370 2.48592 2.78244 3.36074 3.39775 3.43124 3.78551 4.17760 4.49004 4.53120 5.04118 5.34059 5.37983 5.41359 5.49225 5.64490 5.67880 5.74467 5.79112 6.08812 6.28611 6.66993 6.86829 7.09675 7.29158 7.56140 7.69275 7.82189 8.02159 8.45462 9.06989 9.64163 11.13496 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.060998 B = 0.004893 C = 0.004552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.923604 B = 5721.560442 C = 6149.432453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.080 3.920 3 N -0.501 5.501 4 C 0.205 3.795 5 O -0.178 6.178 6 C -0.136 4.136 7 C 0.433 3.567 8 O -0.431 6.431 9 C -0.161 4.161 10 C -0.101 4.101 11 C 0.020 3.980 12 C -0.520 4.520 13 H 0.056 0.944 14 C 0.056 3.944 15 N -0.897 5.897 16 Si 0.893 3.107 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 H 0.084 0.916 21 H 0.096 0.904 22 H 0.077 0.923 23 H 0.257 0.743 24 H 0.096 0.904 25 H 0.096 0.904 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.016 0.984 29 H 0.016 0.984 30 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.159 17.798 -0.083 17.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.044 4.044 3 N -0.231 5.231 4 C -0.020 4.020 5 O -0.063 6.063 6 C -0.189 4.189 7 C 0.311 3.689 8 O -0.307 6.307 9 C -0.198 4.198 10 C -0.139 4.139 11 C -0.017 4.017 12 C -0.558 4.558 13 H 0.074 0.926 14 C -0.145 4.145 15 N -0.537 5.537 16 Si 0.720 3.280 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.202 1.202 20 H 0.102 0.898 21 H 0.115 0.885 22 H 0.096 0.904 23 H 0.272 0.728 24 H 0.114 0.886 25 H 0.114 0.886 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.035 0.965 29 H 0.035 0.965 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.744 18.117 -0.081 18.324 hybrid contribution 0.245 -1.349 -0.014 1.371 sum -2.500 16.768 -0.096 16.954 Atomic orbital electron populations 1.20448 0.85324 1.04496 1.03847 1.22439 0.98499 0.86913 0.96570 1.70300 1.01426 1.31731 1.19629 1.28448 0.97534 0.79915 0.96063 1.84570 1.29613 1.23835 1.68276 1.22738 0.81405 0.98430 1.16279 1.20220 0.90803 0.85926 0.71917 1.90592 1.19177 1.84257 1.36673 1.22171 0.98115 0.95172 1.04350 1.21514 0.99211 0.91612 1.01559 1.19122 0.93569 0.91757 0.97232 1.21229 0.93093 0.91063 1.50440 0.92624 1.25019 0.94828 0.99267 0.95338 1.69956 1.04709 1.28019 1.51003 0.86649 0.79225 0.83417 0.78671 1.20227 1.21316 1.20223 0.89772 0.88542 0.90382 0.72780 0.88564 0.88578 0.92659 0.92651 0.96549 0.96543 0.92989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.95 9.84 36.01 0.35 -0.59 16 2 C 0.08 1.05 7.17 -82.36 -0.59 0.46 16 3 N -0.50 -6.08 11.25 -10.79 -0.12 -6.21 16 4 C 0.21 1.90 13.20 52.29 0.69 2.59 16 5 O -0.18 -2.16 10.63 4.27 0.05 -2.11 16 6 C -0.14 -1.91 6.89 -38.87 -0.27 -2.18 16 7 C 0.43 6.91 6.94 -33.10 -0.23 6.68 16 8 O -0.43 -7.62 14.28 5.43 0.08 -7.55 16 9 C -0.16 -2.71 5.45 -27.89 -0.15 -2.86 16 10 C -0.10 -2.15 4.44 -26.73 -0.12 -2.27 16 11 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 12 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 13 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 15 N -0.90 -27.10 13.29 55.43 0.74 -26.37 16 16 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 21 H 0.10 1.17 6.41 -51.93 -0.33 0.84 16 22 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 23 H 0.26 0.86 8.06 -52.48 -0.42 0.44 16 24 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 25 H 0.10 1.53 8.14 -51.93 -0.42 1.10 16 26 H 0.05 1.19 8.10 -51.93 -0.42 0.77 16 27 H 0.05 1.19 8.10 -51.93 -0.42 0.77 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 269.35 15.07 4.06 4.06 Total: -1.00 -33.09 269.35 -4.76 -37.85 By element: Atomic # 1 Polarization: -1.36 SS G_CDS: -3.67 Total: -5.03 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: -0.86 Total: -11.54 kcal Atomic # 7 Polarization: -33.19 SS G_CDS: 0.61 Total: -32.57 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.12 Total: -9.66 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -33.09 -4.76 -37.85 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259834952.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.852 kcal (2) G-P(sol) polarization free energy of solvation -33.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds