Wall clock time and date at job start Mon Mar 30 2020 03:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30622 * 1 3 3 Si 1.86797 * 119.99997 * 2 1 4 4 H 1.48493 * 109.47638 * 274.98491 * 3 2 1 5 5 H 1.48512 * 109.46982 * 34.98540 * 3 2 1 6 6 H 1.48502 * 109.47268 * 154.97921 * 3 2 1 7 7 C 1.40338 * 120.00225 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00448 * 186.07181 * 7 2 1 9 9 C 1.39797 * 120.00173 * 6.06953 * 7 2 1 10 10 N 1.32816 * 125.80273 * 174.30877 * 9 7 2 11 11 C 1.33065 * 108.64906 * 180.02562 * 10 9 7 12 12 C 1.50694 * 126.00569 * 180.02562 * 11 10 9 13 13 C 1.53002 * 109.47423 * 304.97413 * 12 11 10 14 14 H 1.08998 * 110.27396 * 55.63292 * 13 12 11 15 15 C 1.54939 * 110.31290 * 177.83748 * 13 12 11 16 16 C 1.55305 * 100.94317 * 155.35966 * 15 13 12 17 17 C 1.54384 * 102.25274 * 325.86399 * 16 15 13 18 18 O 1.43241 * 107.58762 * 21.35698 * 17 16 15 19 19 C 1.35933 * 107.98239 * 0.02562 * 11 10 9 20 20 O 1.34600 * 107.35985 * 0.22417 * 19 11 10 21 21 H 0.97003 * 120.00341 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.47278 * 64.97463 * 12 11 10 23 23 H 1.08999 * 109.47303 * 184.97509 * 12 11 10 24 24 H 1.09004 * 111.12660 * 273.27800 * 15 13 12 25 25 H 1.09004 * 111.12803 * 37.43907 * 15 13 12 26 26 H 1.09001 * 110.84873 * 207.67474 * 16 15 13 27 27 H 1.09003 * 111.02416 * 84.13254 * 16 15 13 28 28 H 1.08996 * 109.83199 * 261.84479 * 17 16 15 29 29 H 1.09007 * 109.82824 * 140.86771 * 17 16 15 30 30 H 1.07997 * 126.32310 * 179.97438 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 2.3824 2.1073 -1.3947 5 1 1.4942 2.6200 0.8028 6 1 3.5864 1.4121 0.5922 7 6 2.0080 -1.2153 -0.0005 8 1 3.0834 -1.2180 0.0984 9 6 1.3149 -2.4226 -0.1291 10 7 1.8653 -3.6253 -0.2503 11 6 0.8941 -4.5295 -0.3497 12 6 1.0809 -6.0171 -0.5020 13 6 1.9719 -6.2978 -1.7137 14 1 2.9181 -5.7651 -1.6183 15 6 2.2215 -7.8203 -1.8566 16 6 2.5309 -7.9271 -3.3748 17 6 1.6166 -6.8364 -3.9730 18 8 1.3025 -5.9121 -2.9248 19 6 -0.2960 -3.8755 -0.2896 20 8 -0.0270 -2.5633 -0.1576 21 1 -0.4851 0.8400 0.0004 22 1 1.5516 -6.4180 0.3957 23 1 0.1107 -6.4922 -0.6466 24 1 3.0761 -8.1362 -1.2583 25 1 1.3298 -8.3907 -1.5963 26 1 2.2616 -8.9117 -3.7572 27 1 3.5794 -7.7079 -3.5765 28 1 0.7011 -7.2891 -4.3535 29 1 2.1372 -6.3187 -4.7788 30 1 -1.2765 -4.3252 -0.3425 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259879518.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:07 Heat of formation + Delta-G solvation = -49.733014 kcal Electronic energy + Delta-G solvation = -14994.134520 eV Core-core repulsion = 12369.198591 eV Total energy + Delta-G solvation = -2624.935930 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.84640 -39.02650 -33.82945 -33.31577 -31.89437 -30.99606 -28.77053 -26.31507 -24.62005 -21.58565 -21.03871 -20.57427 -19.17870 -17.31590 -16.44023 -15.58023 -15.30764 -14.72998 -14.36424 -14.30178 -13.52644 -13.14988 -13.03624 -12.48474 -11.92420 -11.74365 -11.49349 -11.32797 -11.26086 -11.01829 -10.75556 -10.63237 -10.32549 -10.25031 -9.50699 -9.16753 -8.99744 -8.42986 -7.27346 -6.83682 -4.57633 2.93668 3.07038 3.13126 3.46340 3.90101 4.14686 4.23195 4.65461 4.91428 5.04489 5.09563 5.32048 5.39391 5.49542 5.68499 5.83540 5.84016 5.89173 5.98319 6.09653 6.13957 6.31550 6.57387 6.78722 7.06554 7.14017 7.49120 7.83258 8.02629 8.29103 8.62304 8.80383 9.96253 10.20066 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.048677 B = 0.006405 C = 0.006131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.085928 B = 4370.502744 C = 4565.562800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.071 3.929 3 Si 0.930 3.070 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.258 1.258 7 C -0.434 4.434 8 H 0.108 0.892 9 C 0.347 3.653 10 N -0.609 5.609 11 C 0.017 3.983 12 C -0.026 4.026 13 C 0.093 3.907 14 H 0.079 0.921 15 C -0.154 4.154 16 C -0.155 4.155 17 C 0.049 3.951 18 O -0.369 6.369 19 C -0.211 4.211 20 O -0.187 6.187 21 H 0.284 0.716 22 H 0.077 0.923 23 H 0.068 0.932 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.146 -9.736 -3.724 10.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.151 4.151 3 Si 0.754 3.246 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.182 1.182 7 C -0.469 4.469 8 H 0.126 0.874 9 C 0.162 3.838 10 N -0.343 5.343 11 C -0.108 4.108 12 C -0.064 4.064 13 C 0.036 3.964 14 H 0.097 0.903 15 C -0.192 4.192 16 C -0.193 4.193 17 C -0.028 4.028 18 O -0.288 6.288 19 C -0.284 4.284 20 O -0.078 6.078 21 H 0.095 0.905 22 H 0.096 0.904 23 H 0.087 0.913 24 H 0.099 0.901 25 H 0.095 0.905 26 H 0.094 0.906 27 H 0.093 0.907 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 2.462 -9.513 -3.742 10.515 hybrid contribution -0.487 0.539 -0.101 0.733 sum 1.976 -8.975 -3.843 9.961 Atomic orbital electron populations 1.69728 1.07616 1.29779 1.33516 1.26093 0.94996 1.01889 0.92146 0.85939 0.80217 0.79300 0.79188 1.19231 1.20022 1.18172 1.18347 0.95092 0.86010 1.47462 0.87398 1.22070 0.76786 0.93393 0.91562 1.70722 1.31546 0.98433 1.33614 1.21042 0.90376 0.95131 1.04249 1.19862 0.99324 0.91110 0.96121 1.22952 0.96247 0.92103 0.85146 0.90285 1.23356 1.02411 0.97456 0.95936 1.23096 1.00641 0.99582 0.95975 1.23058 0.97958 0.90304 0.91492 1.88568 1.71071 1.50028 1.19158 1.24033 0.98818 0.82961 1.22636 1.84826 1.26758 1.24089 1.72170 0.90477 0.90440 0.91293 0.90095 0.90523 0.90553 0.90740 0.91957 0.92027 0.81298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -21.36 12.00 55.57 0.67 -20.70 16 2 C 0.07 1.86 5.49 -17.28 -0.09 1.76 16 3 Si 0.93 19.08 29.57 -169.99 -5.03 14.06 16 4 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 5 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 6 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 7 C -0.43 -12.35 9.45 -38.21 -0.36 -12.71 16 8 H 0.11 2.92 7.86 -52.49 -0.41 2.51 16 9 C 0.35 10.46 7.65 -16.54 -0.13 10.33 16 10 N -0.61 -17.39 11.32 -9.64 -0.11 -17.50 16 11 C 0.02 0.42 6.20 -82.89 -0.51 -0.09 16 12 C -0.03 -0.50 5.53 -27.88 -0.15 -0.66 16 13 C 0.09 1.66 3.40 -25.71 -0.09 1.57 16 14 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 15 C -0.15 -1.96 6.57 -24.49 -0.16 -2.12 16 16 C -0.16 -1.78 7.02 -24.78 -0.17 -1.96 16 17 C 0.05 0.70 7.79 37.88 0.30 0.99 16 18 O -0.37 -7.23 10.86 -35.23 -0.38 -7.61 16 19 C -0.21 -5.51 12.11 29.91 0.36 -5.14 16 20 O -0.19 -5.61 9.09 3.07 0.03 -5.59 16 21 H 0.28 6.96 8.29 -40.82 -0.34 6.62 16 22 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 23 H 0.07 1.18 8.11 -51.93 -0.42 0.76 16 24 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.08 0.89 8.06 -51.93 -0.42 0.47 16 26 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.17 3.74 8.06 -52.49 -0.42 3.32 16 LS Contribution 262.74 15.07 3.96 3.96 Total: -1.00 -32.88 262.74 -5.65 -38.53 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -3.77 Total: 2.87 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: -1.02 Total: -8.03 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 0.56 Total: -38.19 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: -0.35 Total: -13.20 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.06 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -32.88 -5.65 -38.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259879518.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.201 kcal (2) G-P(sol) polarization free energy of solvation -32.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds