Wall clock time and date at job start Mon Mar 30 2020 03:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50701 * 109.87215 * 2 1 4 4 C 1.35930 * 126.32475 * 271.00756 * 3 2 1 5 5 N 1.33064 * 107.98557 * 179.75082 * 4 3 2 6 6 C 1.32815 * 108.64368 * 0.36999 * 5 4 3 7 7 C 1.39799 * 125.79429 * 179.88991 * 6 5 4 8 8 H 1.08008 * 119.99679 * 185.74003 * 7 6 5 9 9 C 1.40334 * 120.00432 * 5.74881 * 7 6 5 10 10 N 1.30628 * 120.00487 * 184.07023 * 9 7 6 11 11 Si 1.86803 * 119.99958 * 4.33999 * 9 7 6 12 12 H 1.48493 * 109.47369 * 179.72943 * 11 9 7 13 13 H 1.48502 * 109.46918 * 299.73110 * 11 9 7 14 14 H 1.48501 * 109.46825 * 59.72549 * 11 9 7 15 15 O 1.34598 * 126.31841 * 90.97966 * 3 2 1 16 16 C 1.54098 * 109.87748 * 121.01075 * 2 1 3 17 17 C 1.54815 * 104.18850 * 121.60622 * 16 2 1 18 18 C 1.54995 * 102.09013 * 20.87916 * 17 16 2 19 19 O 1.43742 * 110.00494 * 238.91544 * 2 1 3 20 20 H 1.09001 * 109.47103 * 59.30025 * 1 2 3 21 21 H 1.08999 * 109.47136 * 179.29684 * 1 2 3 22 22 H 1.08999 * 109.47441 * 299.29829 * 1 2 3 23 23 H 1.08010 * 126.00760 * 359.97438 * 4 3 2 24 24 H 0.97007 * 119.99519 * 355.13053 * 10 9 7 25 25 H 1.09004 * 110.48833 * 240.27708 * 16 2 1 26 26 H 1.08997 * 110.49058 * 2.79519 * 16 2 1 27 27 H 1.09004 * 110.90678 * 139.07777 * 17 16 2 28 28 H 1.08995 * 110.90191 * 262.64648 * 17 16 2 29 29 H 1.08998 * 110.61767 * 81.48483 * 18 17 16 30 30 H 1.09001 * 110.61083 * 204.32017 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0422 1.4173 0.0000 4 6 2.2978 2.1811 -1.0950 5 7 2.7289 3.3683 -0.6763 6 6 2.7577 3.3654 0.6516 7 6 3.1568 4.4315 1.4630 8 1 3.2323 4.2975 2.5321 9 6 3.4593 5.6757 0.8887 10 7 3.9083 6.6483 1.6361 11 14 3.2126 5.9433 -0.9435 12 1 3.5961 7.3337 -1.2968 13 1 4.0599 4.9882 -1.7018 14 1 1.7854 5.7206 -1.2885 15 8 2.3306 2.1607 1.0843 16 6 2.0539 -0.7466 1.2420 17 6 2.9226 -1.8883 0.6601 18 6 3.2417 -1.3608 -0.7620 19 8 2.0217 -0.6974 -1.1567 20 1 -0.3633 0.5247 -0.8836 21 1 -0.3633 -1.0276 -0.0126 22 1 -0.3634 0.5029 0.8962 23 1 2.1697 1.8788 -2.1240 24 1 3.9660 6.5341 2.5977 25 1 2.6597 -0.0828 1.8589 26 1 1.2246 -1.1528 1.8211 27 1 3.8358 -2.0171 1.2412 28 1 2.3593 -2.8201 0.6126 29 1 4.0708 -0.6538 -0.7321 30 1 3.4676 -2.1871 -1.4360 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259881121.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:42 Heat of formation + Delta-G solvation = -72.106413 kcal Electronic energy + Delta-G solvation = -15534.555538 eV Core-core repulsion = 12908.649425 eV Total energy + Delta-G solvation = -2625.906113 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.46444 -40.48264 -36.14488 -34.98474 -33.73006 -32.80092 -31.04230 -27.35310 -26.78336 -23.71870 -22.99885 -22.31729 -21.02566 -20.34043 -18.10175 -17.31292 -16.89111 -16.57125 -16.42034 -15.63394 -15.43880 -14.64220 -14.46987 -14.06301 -13.71401 -13.49941 -13.27687 -13.06063 -12.74666 -12.60851 -12.09431 -11.94166 -11.82408 -11.81600 -11.66162 -11.34168 -10.97053 -10.13114 -9.74418 -9.56351 -6.99800 0.82825 1.53764 1.57860 1.95025 2.14096 2.23996 2.39977 2.93326 2.96625 3.65092 3.71986 3.95719 4.01273 4.15894 4.24758 4.41926 4.62712 4.63229 4.74011 4.81034 4.89057 4.95082 5.02246 5.13481 5.21297 5.23476 5.42870 5.58416 5.86758 5.95468 6.07901 6.38779 7.41773 7.81974 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.046770 B = 0.008430 C = 0.008046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.533794 B = 3320.827582 C = 3479.025020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.204 3.796 3 C -0.186 4.186 4 C 0.005 3.995 5 N -0.632 5.632 6 C 0.312 3.688 7 C -0.508 4.508 8 H 0.078 0.922 9 C 0.040 3.960 10 N -0.809 5.809 11 Si 1.162 2.838 12 H -0.302 1.302 13 H -0.276 1.276 14 H -0.291 1.291 15 O -0.239 6.239 16 C -0.147 4.147 17 C -0.141 4.141 18 C 0.037 3.963 19 O -0.368 6.368 20 H 0.056 0.944 21 H 0.095 0.905 22 H 0.066 0.934 23 H 0.176 0.824 24 H 0.287 0.713 25 H 0.052 0.948 26 H 0.102 0.898 27 H 0.088 0.912 28 H 0.104 0.896 29 H 0.037 0.963 30 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.612 -14.935 -2.233 15.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.164 3.836 3 C -0.239 4.239 4 C -0.135 4.135 5 N -0.369 5.369 6 C 0.128 3.872 7 C -0.544 4.544 8 H 0.096 0.904 9 C -0.179 4.179 10 N -0.434 5.434 11 Si 0.990 3.010 12 H -0.232 1.232 13 H -0.202 1.202 14 H -0.219 1.219 15 O -0.135 6.135 16 C -0.184 4.184 17 C -0.179 4.179 18 C -0.039 4.039 19 O -0.287 6.287 20 H 0.075 0.925 21 H 0.114 0.886 22 H 0.085 0.915 23 H 0.193 0.807 24 H 0.099 0.901 25 H 0.071 0.929 26 H 0.121 0.879 27 H 0.107 0.893 28 H 0.123 0.877 29 H 0.056 0.944 30 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.307 -13.335 -3.843 14.266 hybrid contribution -0.019 -1.186 2.268 2.559 sum -3.326 -14.521 -1.576 14.980 Atomic orbital electron populations 1.21860 0.90446 1.03834 1.02548 1.20033 0.94819 0.82172 0.86616 1.23795 1.17674 0.98113 0.84341 1.22917 1.01078 0.89606 0.99908 1.69872 1.34309 1.24275 1.08445 1.22485 0.91866 0.83783 0.89038 1.19478 1.45161 0.94408 0.95309 0.90409 1.28128 0.88297 0.89827 1.11653 1.70617 1.29781 1.33867 1.09134 0.81964 0.78274 0.72467 0.68252 1.23176 1.20235 1.21857 1.84384 1.68282 1.24747 1.36094 1.23025 1.01200 0.97441 0.96777 1.23115 1.00771 0.98548 0.95440 1.23753 0.86682 0.96386 0.97085 1.88857 1.40128 1.65974 1.33722 0.92474 0.88649 0.91471 0.80659 0.90110 0.92878 0.87926 0.89316 0.87732 0.94424 0.85820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.63 8.65 71.98 0.62 -3.01 16 2 C 0.20 6.80 1.14 -11.17 -0.01 6.79 16 3 C -0.19 -8.27 5.86 25.15 0.15 -8.12 16 4 C 0.01 0.25 11.45 83.97 0.96 1.22 16 5 N -0.63 -34.54 6.43 -309.37 -1.99 -36.53 16 6 C 0.31 17.60 7.50 84.92 0.64 18.24 16 7 C -0.51 -29.30 9.89 23.16 0.23 -29.07 16 8 H 0.08 4.50 8.06 -2.91 -0.02 4.48 16 9 C 0.04 2.26 5.52 85.38 0.47 2.73 16 10 N -0.81 -44.35 13.64 21.89 0.30 -44.05 16 11 Si 1.16 58.00 25.86 68.60 1.77 59.78 16 12 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 13 H -0.28 -14.07 6.76 99.48 0.67 -13.40 16 14 H -0.29 -14.74 7.11 99.48 0.71 -14.04 16 15 O -0.24 -12.41 9.96 -11.80 -0.12 -12.52 16 16 C -0.15 -4.13 6.23 31.59 0.20 -3.93 16 17 C -0.14 -3.03 7.15 31.90 0.23 -2.80 16 18 C 0.04 0.94 7.66 72.66 0.56 1.50 16 19 O -0.37 -11.61 10.55 -148.98 -1.57 -13.18 16 20 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 21 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 22 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 23 H 0.18 7.35 8.06 -2.91 -0.02 7.33 16 24 H 0.29 15.11 8.72 -92.70 -0.81 14.30 16 25 H 0.05 1.80 7.07 -2.38 -0.02 1.79 16 26 H 0.10 2.33 7.70 -2.39 -0.02 2.31 16 27 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 28 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -64.80 255.06 3.49 -61.31 By element: Atomic # 1 Polarization: 0.61 SS G_CDS: 1.06 Total: 1.67 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: 4.04 Total: -16.46 kcal Atomic # 7 Polarization: -78.89 SS G_CDS: -1.69 Total: -80.58 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -1.69 Total: -25.71 kcal Atomic # 14 Polarization: 58.00 SS G_CDS: 1.77 Total: 59.78 kcal Total: -64.80 3.49 -61.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259881121.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.800 kcal (2) G-P(sol) polarization free energy of solvation -64.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds