Wall clock time and date at job start Mon Mar 30 2020 03:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.34602 * 126.31894 * 2 1 4 4 C 1.34950 * 107.60556 * 180.02562 * 3 2 1 5 5 C 1.39801 * 125.79067 * 179.97438 * 4 3 2 6 6 H 1.08004 * 119.99444 * 186.15132 * 5 4 3 7 7 C 1.40338 * 120.00532 * 6.15173 * 5 4 3 8 8 N 1.30630 * 119.99556 * 175.19861 * 7 5 4 9 9 Si 1.86793 * 119.99849 * 355.19794 * 7 5 4 10 10 H 1.48495 * 109.47163 * 59.99830 * 9 7 5 11 11 H 1.48503 * 109.47120 * 299.99814 * 9 7 5 12 12 H 1.48500 * 109.47205 * 180.02562 * 9 7 5 13 13 N 1.32804 * 108.40482 * 0.24125 * 4 3 2 14 14 C 1.33062 * 108.65076 * 359.60771 * 13 4 3 15 15 C 1.50701 * 126.01356 * 180.15341 * 14 13 4 16 16 H 1.08996 * 110.45904 * 179.57948 * 15 14 13 17 17 C 1.54511 * 110.50905 * 302.18549 * 15 14 13 18 18 C 1.54486 * 104.06267 * 118.64276 * 17 15 14 19 19 O 1.44424 * 104.80264 * 23.98110 * 18 17 15 20 20 C 1.44650 * 105.36813 * 319.56353 * 19 18 17 21 21 H 1.09001 * 109.47630 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.47013 * 119.97894 * 1 2 3 23 23 H 1.08999 * 109.47133 * 239.97280 * 1 2 3 24 24 H 0.96994 * 120.00457 * 5.09273 * 8 7 5 25 25 H 1.09003 * 110.51012 * 237.28757 * 17 15 14 26 26 H 1.09003 * 110.51298 * 359.97438 * 17 15 14 27 27 H 1.08997 * 110.37028 * 142.81280 * 18 17 15 28 28 H 1.09003 * 110.37116 * 265.03572 * 18 17 15 29 29 H 1.09003 * 110.33514 * 281.59679 * 20 19 18 30 30 H 1.08990 * 110.50641 * 159.19102 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.3042 1.0845 0.0000 4 6 3.5823 0.6516 -0.0006 5 6 4.7205 1.4633 -0.0013 6 1 5.7001 1.0196 -0.1019 7 6 4.5904 2.8546 0.1288 8 7 5.6560 3.6043 0.2225 9 14 2.8934 3.6342 0.1679 10 1 2.1264 3.0930 1.3186 11 1 2.1766 3.3234 -1.0949 12 1 3.0281 5.1062 0.3106 13 7 3.5752 -0.6764 -0.0062 14 6 2.3122 -1.0952 -0.0006 15 6 1.8547 -2.5311 -0.0008 16 1 0.7661 -2.5842 0.0120 17 6 2.4188 -3.2788 -1.2298 18 6 3.2889 -4.4002 -0.6201 19 8 2.7472 -4.6101 0.7021 20 6 2.4479 -3.2884 1.2080 21 1 -0.3634 1.0276 0.0005 22 1 -0.3633 -0.5135 -0.8902 23 1 -0.3633 -0.5142 0.8897 24 1 6.5368 3.2092 0.1282 25 1 1.6090 -3.7035 -1.8232 26 1 3.0281 -2.6097 -1.8374 27 1 3.2049 -5.3106 -1.2135 28 1 4.3298 -4.0823 -0.5596 29 1 3.3591 -2.7992 1.5522 30 1 1.7182 -3.3448 2.0156 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259890082.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:46 Heat of formation + Delta-G solvation = -57.050058 kcal Electronic energy + Delta-G solvation = -15387.514954 eV Core-core repulsion = 12762.261734 eV Total energy + Delta-G solvation = -2625.253220 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.53727 -38.84061 -34.14277 -33.73465 -31.86097 -30.65368 -28.73404 -27.91441 -24.05829 -22.48916 -21.38532 -20.34820 -19.47811 -18.24460 -16.05357 -15.84273 -15.24269 -14.95962 -14.74034 -13.84479 -13.77208 -13.28092 -12.81244 -12.45829 -12.32553 -12.25072 -11.85240 -11.49319 -11.20037 -11.01697 -10.92670 -10.39078 -10.11082 -9.89860 -9.67549 -9.49409 -9.19636 -8.75557 -7.59047 -7.53409 -4.85711 2.71557 3.14554 3.28463 3.41654 3.91566 3.95415 4.26716 4.55214 4.95913 5.05822 5.15729 5.30578 5.48887 5.65247 5.67191 5.78624 5.97513 5.99724 6.02884 6.08476 6.20733 6.26764 6.36555 6.44888 6.73825 7.06289 7.33276 7.42577 7.58405 7.99119 8.21096 8.39369 9.50697 9.83938 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.040424 B = 0.008849 C = 0.007715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.497051 B = 3163.561721 C = 3628.418133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 C -0.188 4.188 3 O -0.237 6.237 4 C 0.331 3.669 5 C -0.476 4.476 6 H 0.107 0.893 7 C 0.048 3.952 8 N -0.799 5.799 9 Si 1.076 2.924 10 H -0.268 1.268 11 H -0.269 1.269 12 H -0.282 1.282 13 N -0.600 5.600 14 C 0.039 3.961 15 C -0.033 4.033 16 H 0.085 0.915 17 C -0.141 4.141 18 C 0.050 3.950 19 O -0.385 6.385 20 C 0.057 3.943 21 H 0.059 0.941 22 H 0.061 0.939 23 H 0.061 0.939 24 H 0.290 0.710 25 H 0.068 0.932 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.707 -7.024 -1.164 10.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.241 4.241 3 O -0.135 6.135 4 C 0.148 3.852 5 C -0.511 4.511 6 H 0.124 0.876 7 C -0.175 4.175 8 N -0.424 5.424 9 Si 0.902 3.098 10 H -0.194 1.194 11 H -0.195 1.195 12 H -0.209 1.209 13 N -0.332 5.332 14 C -0.086 4.086 15 C -0.052 4.052 16 H 0.103 0.897 17 C -0.179 4.179 18 C -0.027 4.027 19 O -0.304 6.304 20 C -0.020 4.020 21 H 0.078 0.922 22 H 0.080 0.920 23 H 0.080 0.920 24 H 0.101 0.899 25 H 0.087 0.913 26 H 0.101 0.899 27 H 0.102 0.898 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.852 -6.145 -0.875 10.009 hybrid contribution 0.461 -0.789 -0.345 0.977 sum -7.391 -6.934 -1.220 10.208 Atomic orbital electron populations 1.19767 0.87019 1.01934 1.01022 1.22392 0.93154 0.84853 1.23709 1.84187 1.18425 1.34786 1.76114 1.22311 0.81836 0.88719 0.92338 1.19523 0.91438 0.92156 1.48001 0.87565 1.27298 1.06560 0.93778 0.89854 1.70507 1.00504 1.40331 1.31054 0.83317 0.71646 0.75033 0.79799 1.19392 1.19499 1.20881 1.70749 1.19728 1.08688 1.34073 1.20753 0.90390 0.93628 1.03816 1.20697 0.99545 0.89769 0.95195 0.89709 1.22901 0.99672 0.97380 0.97898 1.23347 0.97556 0.98049 0.83712 1.89047 1.83459 1.27223 1.30683 1.23493 1.00421 0.82243 0.95822 0.92168 0.91988 0.92003 0.89869 0.91318 0.89862 0.89789 0.92048 0.90980 0.89625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.67 9.73 36.00 0.35 -0.32 16 2 C -0.19 -4.22 7.42 -35.14 -0.26 -4.48 16 3 O -0.24 -6.12 6.20 3.08 0.02 -6.10 16 4 C 0.33 9.03 7.40 -16.55 -0.12 8.90 16 5 C -0.48 -13.13 9.89 -38.21 -0.38 -13.50 16 6 H 0.11 3.00 8.06 -52.48 -0.42 2.58 16 7 C 0.05 1.26 5.52 -17.27 -0.10 1.17 16 8 N -0.80 -21.01 13.64 55.57 0.76 -20.25 16 9 Si 1.08 24.75 25.80 -169.99 -4.39 20.37 16 10 H -0.27 -6.17 6.97 56.52 0.39 -5.78 16 11 H -0.27 -6.13 7.09 56.52 0.40 -5.73 16 12 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 13 N -0.60 -15.60 11.13 -9.64 -0.11 -15.71 16 14 C 0.04 0.87 5.42 -82.88 -0.45 0.42 16 15 C -0.03 -0.58 3.52 -90.20 -0.32 -0.90 16 16 H 0.08 1.31 7.52 -51.93 -0.39 0.92 16 17 C -0.14 -2.27 6.73 -25.16 -0.17 -2.44 16 18 C 0.05 0.77 7.64 37.94 0.29 1.06 16 19 O -0.39 -6.62 11.65 -35.23 -0.41 -7.03 16 20 C 0.06 0.99 7.19 37.93 0.27 1.26 16 21 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 22 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 23 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.29 7.33 8.72 -40.82 -0.36 6.98 16 25 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.08 1.52 7.72 -51.93 -0.40 1.12 16 27 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.07 1.43 7.69 -51.93 -0.40 1.03 16 30 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 LS Contribution 256.76 15.07 3.87 3.87 Total: -1.00 -29.37 256.76 -4.87 -34.24 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -3.73 Total: -0.56 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: -0.88 Total: -8.83 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: 0.65 Total: -35.96 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: -0.39 Total: -13.13 kcal Atomic # 14 Polarization: 24.75 SS G_CDS: -4.39 Total: 20.37 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -29.37 -4.87 -34.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259890082.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.810 kcal (2) G-P(sol) polarization free energy of solvation -29.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds