Wall clock time and date at job start Mon Mar 30 2020 03:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.34602 * 126.31894 * 2 1 4 4 C 1.34950 * 107.60556 * 180.02562 * 3 2 1 5 5 C 1.39801 * 125.79067 * 179.97438 * 4 3 2 6 6 H 1.08004 * 119.99444 * 186.15132 * 5 4 3 7 7 C 1.40338 * 120.00532 * 6.15173 * 5 4 3 8 8 N 1.30630 * 119.99556 * 175.19861 * 7 5 4 9 9 Si 1.86793 * 119.99849 * 355.19794 * 7 5 4 10 10 H 1.48495 * 109.47163 * 59.99830 * 9 7 5 11 11 H 1.48503 * 109.47120 * 299.99814 * 9 7 5 12 12 H 1.48500 * 109.47205 * 180.02562 * 9 7 5 13 13 N 1.32804 * 108.40482 * 0.24125 * 4 3 2 14 14 C 1.33062 * 108.65076 * 359.60771 * 13 4 3 15 15 C 1.50701 * 126.01356 * 180.15341 * 14 13 4 16 16 H 1.08996 * 110.45904 * 179.57948 * 15 14 13 17 17 C 1.54511 * 110.50905 * 302.18549 * 15 14 13 18 18 C 1.54486 * 104.06267 * 118.64276 * 17 15 14 19 19 O 1.44424 * 104.80264 * 23.98110 * 18 17 15 20 20 C 1.44650 * 105.36813 * 319.56353 * 19 18 17 21 21 H 1.09001 * 109.47630 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.47013 * 119.97894 * 1 2 3 23 23 H 1.08999 * 109.47133 * 239.97280 * 1 2 3 24 24 H 0.96994 * 120.00457 * 5.09273 * 8 7 5 25 25 H 1.09003 * 110.51012 * 237.28757 * 17 15 14 26 26 H 1.09003 * 110.51298 * 359.97438 * 17 15 14 27 27 H 1.08997 * 110.37028 * 142.81280 * 18 17 15 28 28 H 1.09003 * 110.37116 * 265.03572 * 18 17 15 29 29 H 1.09003 * 110.33514 * 281.59679 * 20 19 18 30 30 H 1.08990 * 110.50641 * 159.19102 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.3042 1.0845 0.0000 4 6 3.5823 0.6516 -0.0006 5 6 4.7205 1.4633 -0.0013 6 1 5.7001 1.0196 -0.1019 7 6 4.5904 2.8546 0.1288 8 7 5.6560 3.6043 0.2225 9 14 2.8934 3.6342 0.1679 10 1 2.1264 3.0930 1.3186 11 1 2.1766 3.3234 -1.0949 12 1 3.0281 5.1062 0.3106 13 7 3.5752 -0.6764 -0.0062 14 6 2.3122 -1.0952 -0.0006 15 6 1.8547 -2.5311 -0.0008 16 1 0.7661 -2.5842 0.0120 17 6 2.4188 -3.2788 -1.2298 18 6 3.2889 -4.4002 -0.6201 19 8 2.7472 -4.6101 0.7021 20 6 2.4479 -3.2884 1.2080 21 1 -0.3634 1.0276 0.0005 22 1 -0.3633 -0.5135 -0.8902 23 1 -0.3633 -0.5142 0.8897 24 1 6.5368 3.2092 0.1282 25 1 1.6090 -3.7035 -1.8232 26 1 3.0281 -2.6097 -1.8374 27 1 3.2049 -5.3106 -1.2135 28 1 4.3298 -4.0823 -0.5596 29 1 3.3591 -2.7992 1.5522 30 1 1.7182 -3.3448 2.0156 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259890082.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:46 Heat of formation + Delta-G solvation = -79.265634 kcal Electronic energy + Delta-G solvation = -15388.478294 eV Core-core repulsion = 12762.261734 eV Total energy + Delta-G solvation = -2626.216560 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.44284 -40.19514 -36.03436 -35.57322 -33.59034 -32.09871 -30.08177 -29.74707 -25.72593 -23.88408 -22.95738 -22.26900 -21.25496 -20.09282 -17.54693 -17.36251 -17.10184 -16.59998 -16.12812 -15.67572 -15.42929 -15.03790 -14.38882 -13.97372 -13.77572 -13.72832 -13.22545 -12.99598 -12.81327 -12.66952 -12.28826 -12.04955 -11.81866 -11.66924 -11.46794 -11.08485 -10.86084 -10.64822 -9.60721 -9.43045 -6.88226 0.84091 1.30568 1.47791 1.59502 2.03779 2.09909 2.71991 2.94910 3.00024 3.68973 3.74674 3.90842 4.15120 4.21624 4.33898 4.42288 4.61088 4.66021 4.76662 4.81379 4.83167 4.94108 5.00870 5.05645 5.16323 5.25536 5.64794 5.68334 5.82246 5.91055 6.24587 6.36688 7.58004 7.79624 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.040424 B = 0.008849 C = 0.007715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.497051 B = 3163.561721 C = 3628.418133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 C -0.188 4.188 3 O -0.247 6.247 4 C 0.307 3.693 5 C -0.506 4.506 6 H 0.080 0.920 7 C 0.022 3.978 8 N -0.813 5.813 9 Si 1.111 2.889 10 H -0.269 1.269 11 H -0.267 1.267 12 H -0.261 1.261 13 N -0.619 5.619 14 C 0.019 3.981 15 C -0.033 4.033 16 H 0.120 0.880 17 C -0.137 4.137 18 C 0.048 3.952 19 O -0.389 6.389 20 C 0.059 3.941 21 H 0.067 0.933 22 H 0.091 0.909 23 H 0.091 0.909 24 H 0.286 0.714 25 H 0.104 0.896 26 H 0.054 0.946 27 H 0.120 0.880 28 H 0.041 0.959 29 H 0.036 0.964 30 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.811 -8.103 -1.382 13.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.240 4.240 3 O -0.144 6.144 4 C 0.121 3.879 5 C -0.542 4.542 6 H 0.098 0.902 7 C -0.197 4.197 8 N -0.438 5.438 9 Si 0.932 3.068 10 H -0.195 1.195 11 H -0.192 1.192 12 H -0.186 1.186 13 N -0.353 5.353 14 C -0.104 4.104 15 C -0.052 4.052 16 H 0.138 0.862 17 C -0.175 4.175 18 C -0.028 4.028 19 O -0.308 6.308 20 C -0.018 4.018 21 H 0.086 0.914 22 H 0.110 0.890 23 H 0.110 0.890 24 H 0.097 0.903 25 H 0.123 0.877 26 H 0.073 0.927 27 H 0.138 0.862 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -10.956 -7.237 -1.095 13.176 hybrid contribution 1.384 -0.611 -0.291 1.541 sum -9.572 -7.847 -1.386 12.455 Atomic orbital electron populations 1.20087 0.82421 1.03495 1.03849 1.23714 0.95683 0.83966 1.20660 1.84198 1.18177 1.36304 1.75679 1.22330 0.82450 0.89236 0.93846 1.19435 0.90898 0.93224 1.50629 0.90177 1.28273 1.08759 0.93636 0.89041 1.70541 1.00581 1.40288 1.32379 0.82923 0.68606 0.75610 0.79676 1.19484 1.19230 1.18645 1.70720 1.22364 1.08408 1.33781 1.21450 0.88973 0.96196 1.03814 1.20913 1.01467 0.86893 0.95904 0.86202 1.22900 1.00378 0.96864 0.97348 1.23471 0.96340 0.99541 0.83464 1.89050 1.83421 1.26844 1.31457 1.23432 0.99503 0.82199 0.96615 0.91361 0.89020 0.89039 0.90294 0.87746 0.92706 0.86199 0.94069 0.94556 0.86969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.19 9.73 71.23 0.69 -0.50 16 2 C -0.19 -8.02 7.42 25.15 0.19 -7.83 16 3 O -0.25 -12.54 6.20 -11.90 -0.07 -12.61 16 4 C 0.31 17.11 7.40 84.92 0.63 17.74 16 5 C -0.51 -29.19 9.89 23.16 0.23 -28.96 16 6 H 0.08 4.87 8.06 -2.91 -0.02 4.84 16 7 C 0.02 1.16 5.52 85.38 0.47 1.64 16 8 N -0.81 -43.82 13.64 21.89 0.30 -43.52 16 9 Si 1.11 49.78 25.80 68.60 1.77 51.55 16 10 H -0.27 -11.96 6.97 99.48 0.69 -11.27 16 11 H -0.27 -11.71 7.09 99.48 0.71 -11.00 16 12 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 13 N -0.62 -32.81 11.13 -297.41 -3.31 -36.12 16 14 C 0.02 0.81 5.42 41.84 0.23 1.04 16 15 C -0.03 -1.07 3.52 -10.52 -0.04 -1.10 16 16 H 0.12 3.08 7.52 -2.39 -0.02 3.06 16 17 C -0.14 -4.08 6.73 31.61 0.21 -3.86 16 18 C 0.05 1.39 7.64 72.49 0.55 1.94 16 19 O -0.39 -12.44 11.65 -148.98 -1.74 -14.17 16 20 C 0.06 1.95 7.19 72.49 0.52 2.47 16 21 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 22 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 23 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 24 H 0.29 15.12 8.72 -92.71 -0.81 14.31 16 25 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 26 H 0.05 1.95 7.72 -2.39 -0.02 1.93 16 27 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 28 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.04 1.45 7.69 -2.39 -0.02 1.43 16 30 H 0.11 3.05 8.14 -2.39 -0.02 3.03 16 Total: -1.00 -65.40 256.76 1.72 -63.68 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: 1.08 Total: 8.64 kcal Atomic # 6 Polarization: -21.12 SS G_CDS: 3.69 Total: -17.44 kcal Atomic # 7 Polarization: -76.63 SS G_CDS: -3.01 Total: -79.64 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -1.81 Total: -26.79 kcal Atomic # 14 Polarization: 49.78 SS G_CDS: 1.77 Total: 51.55 kcal Total: -65.40 1.72 -63.68 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259890082.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.584 kcal (2) G-P(sol) polarization free energy of solvation -65.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds