Wall clock time and date at job start Mon Mar 30 2020 03:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34872 * 116.99977 * 2 1 4 4 O 1.21601 * 119.99642 * 0.02562 * 3 2 1 5 5 C 1.46715 * 120.00012 * 179.97438 * 3 2 1 6 6 C 1.36278 * 125.71066 * 180.02562 * 5 3 2 7 7 C 1.41802 * 107.04636 * 179.97438 * 6 5 3 8 8 C 1.41515 * 126.58161 * 179.97438 * 7 6 5 9 9 H 1.08004 * 119.99706 * 179.74949 * 8 7 6 10 10 C 1.39687 * 119.99838 * 0.02692 * 8 7 6 11 11 N 1.31035 * 119.99907 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99666 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47109 * 90.00306 * 12 10 8 14 14 H 1.48507 * 109.46754 * 210.00045 * 12 10 8 15 15 H 1.48498 * 109.47278 * 329.99876 * 12 10 8 16 16 C 1.39532 * 106.83960 * 0.22751 * 7 6 5 17 17 C 1.50706 * 125.91081 * 179.77065 * 16 7 6 18 18 N 1.34357 * 108.18595 * 359.62550 * 16 7 6 19 19 C 1.46500 * 125.33014 * 180.14724 * 18 16 7 20 20 H 1.08996 * 109.47224 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.47348 * 299.99650 * 1 2 3 22 22 H 1.09002 * 109.47220 * 60.00141 * 1 2 3 23 23 H 1.08000 * 126.47974 * 0.02562 * 6 5 3 24 24 H 0.96996 * 119.99542 * 179.97438 * 11 10 8 25 25 H 1.09000 * 109.47034 * 90.01828 * 17 16 7 26 26 H 1.08994 * 109.47085 * 210.02940 * 17 16 7 27 27 H 1.09006 * 109.46911 * 330.02623 * 17 16 7 28 28 H 1.09003 * 109.46642 * 270.25054 * 19 18 16 29 29 H 1.09004 * 109.46939 * 30.24063 * 19 18 16 30 30 H 1.08993 * 109.47403 * 150.24609 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2017 0.0000 4 8 1.4020 2.2215 0.0005 5 6 3.5295 1.2785 0.0006 6 6 4.2659 2.4252 0.0011 7 6 5.6312 2.0423 0.0021 8 6 6.7501 2.9088 0.0025 9 1 7.7498 2.4999 0.0074 10 6 6.5616 4.2929 0.0023 11 7 5.3488 4.7889 0.0024 12 14 8.0386 5.4366 0.0021 13 1 8.4297 5.7395 -1.3981 14 1 7.6876 6.6984 0.7020 15 1 9.1724 4.7811 0.7021 16 6 5.6599 0.6473 -0.0031 17 6 6.8984 -0.2114 -0.0090 18 7 4.3923 0.2018 0.0012 19 6 3.9893 -1.2066 0.0010 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 3.8822 3.4347 0.0016 24 1 5.2179 5.7500 0.0027 25 1 7.1990 -0.4225 1.0172 26 1 6.6889 -1.1476 -0.5264 27 1 7.7031 0.3152 -0.5223 28 1 3.8897 -1.5558 -1.0268 29 1 4.7450 -1.8008 0.5149 30 1 3.0336 -1.3112 0.5145 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259980482.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:23 Heat of formation + Delta-G solvation = -66.253484 kcal Electronic energy + Delta-G solvation = -15238.622001 eV Core-core repulsion = 12612.969690 eV Total energy + Delta-G solvation = -2625.652311 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.91343 -40.61363 -37.37130 -35.59638 -32.90212 -32.42983 -29.09788 -28.68676 -26.94364 -25.81498 -23.02625 -21.05524 -20.07405 -19.19326 -17.75950 -17.55391 -17.37418 -16.38659 -15.89659 -15.67806 -14.89743 -14.39338 -14.22842 -13.89508 -13.72306 -13.51225 -13.14875 -12.94627 -12.74181 -12.59566 -12.48136 -12.38133 -11.78794 -11.75538 -11.71410 -11.45650 -11.09647 -9.16451 -8.75549 -8.24067 -5.98817 0.49929 1.40438 1.45290 1.58794 1.79686 2.05352 2.34141 2.41741 2.55075 3.62225 4.04839 4.24979 4.33878 4.34601 4.47455 4.56364 4.62521 4.67415 4.84915 4.99239 5.17692 5.25698 5.29686 5.34757 5.62194 5.95086 6.17227 6.32231 6.79000 6.89413 6.96090 7.19699 7.29019 8.71194 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.034150 B = 0.008864 C = 0.007083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.705788 B = 3158.004050 C = 3951.957454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.539 3.461 4 O -0.552 6.552 5 C -0.104 4.104 6 C -0.152 4.152 7 C -0.026 4.026 8 C -0.467 4.467 9 H 0.078 0.922 10 C 0.011 3.989 11 N -0.868 5.868 12 Si 0.985 3.015 13 H -0.269 1.269 14 H -0.280 1.280 15 H -0.255 1.255 16 C -0.056 4.056 17 C -0.051 4.051 18 N -0.419 5.419 19 C 0.070 3.930 20 H 0.142 0.858 21 H 0.057 0.943 22 H 0.057 0.943 23 H 0.137 0.863 24 H 0.272 0.728 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.101 0.899 30 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.390 -11.943 0.065 12.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.277 6.277 3 C 0.389 3.611 4 O -0.445 6.445 5 C -0.212 4.212 6 C -0.183 4.183 7 C -0.032 4.032 8 C -0.501 4.501 9 H 0.096 0.904 10 C -0.196 4.196 11 N -0.500 5.500 12 Si 0.808 3.192 13 H -0.194 1.194 14 H -0.206 1.206 15 H -0.179 1.179 16 C -0.173 4.173 17 C -0.109 4.109 18 N -0.097 5.097 19 C -0.070 4.070 20 H 0.160 0.840 21 H 0.076 0.924 22 H 0.076 0.924 23 H 0.154 0.846 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.096 0.904 27 H 0.087 0.913 28 H 0.096 0.904 29 H 0.119 0.881 30 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.875 -11.863 0.072 12.206 hybrid contribution -0.021 1.171 -0.029 1.172 sum -2.895 -10.692 0.043 11.077 Atomic orbital electron populations 1.23554 0.74838 1.05825 1.02240 1.86595 1.25028 1.31249 1.84821 1.20090 0.87161 0.81596 0.72215 1.90785 1.66281 1.37262 1.50132 1.18993 0.86082 0.89013 1.27121 1.21910 0.93852 0.96457 1.06067 1.17759 0.92899 0.90943 1.01550 1.19067 0.93052 0.90847 1.47139 0.90354 1.26632 0.99306 1.00451 0.93187 1.69883 1.23488 1.13583 1.43036 0.85153 0.78248 0.77053 0.78796 1.19432 1.20587 1.17892 1.21305 0.85709 0.93918 1.16322 1.20044 0.91616 0.97112 1.02118 1.43311 1.04495 1.05896 1.56014 1.22273 1.03007 0.77829 1.03884 0.83990 0.92404 0.92444 0.84554 0.91836 0.91315 0.90394 0.91255 0.90428 0.88080 0.88941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 10.57 113.37 1.20 1.89 16 2 O -0.36 -12.26 7.89 -57.85 -0.46 -12.72 16 3 C 0.54 24.51 7.92 70.04 0.55 25.07 16 4 O -0.55 -28.17 16.65 19.51 0.32 -27.85 16 5 C -0.10 -5.19 6.81 39.93 0.27 -4.92 16 6 C -0.15 -8.87 9.41 22.69 0.21 -8.66 16 7 C -0.03 -1.45 5.94 -21.28 -0.13 -1.58 16 8 C -0.47 -26.14 9.10 23.43 0.21 -25.93 16 9 H 0.08 4.05 7.30 -2.91 -0.02 4.03 16 10 C 0.01 0.61 5.49 85.16 0.47 1.08 16 11 N -0.87 -50.99 10.34 21.79 0.23 -50.77 16 12 Si 0.98 41.88 29.56 68.60 2.03 43.91 16 13 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 14 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 15 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 16 C -0.06 -2.56 6.98 42.49 0.30 -2.27 16 17 C -0.05 -1.73 9.61 71.24 0.68 -1.05 16 18 N -0.42 -17.73 3.13 -518.08 -1.62 -19.35 16 19 C 0.07 2.00 10.09 127.77 1.29 3.29 16 20 H 0.14 2.08 8.14 -2.39 -0.02 2.07 16 21 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 22 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.14 8.82 5.82 -2.91 -0.02 8.80 16 24 H 0.27 14.84 8.30 -92.71 -0.77 14.07 16 25 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 26 H 0.08 2.06 7.63 -2.39 -0.02 2.04 16 27 H 0.07 2.39 7.54 -2.38 -0.02 2.37 16 28 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.10 2.28 7.56 -2.39 -0.02 2.26 16 30 H 0.09 2.51 6.06 -2.39 -0.01 2.50 16 Total: -1.00 -72.45 261.70 6.71 -65.74 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: 1.15 Total: 14.11 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: 5.06 Total: -13.07 kcal Atomic # 7 Polarization: -68.72 SS G_CDS: -1.40 Total: -70.11 kcal Atomic # 8 Polarization: -40.44 SS G_CDS: -0.13 Total: -40.57 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Total: -72.45 6.71 -65.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259980482.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.515 kcal (2) G-P(sol) polarization free energy of solvation -72.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds