Wall clock time and date at job start Mon Mar 30 2020 03:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38278 * 119.99800 * 2 1 4 4 C 1.38221 * 120.14506 * 179.97438 * 3 2 1 5 5 C 1.50698 * 119.92455 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.47556 * 340.00062 * 5 4 3 7 7 N 1.46905 * 109.46910 * 220.00101 * 5 4 3 8 8 C 1.50700 * 109.47079 * 100.00258 * 5 4 3 9 9 H 1.08003 * 120.00031 * 359.97438 * 8 5 4 10 10 C 1.37877 * 119.99851 * 179.97438 * 8 5 4 11 11 N 1.31513 * 120.00267 * 359.97438 * 10 8 5 12 12 Si 1.86801 * 119.99704 * 179.97438 * 10 8 5 13 13 H 1.48506 * 109.47064 * 60.00194 * 12 10 8 14 14 H 1.48506 * 109.47000 * 179.97438 * 12 10 8 15 15 H 1.48494 * 109.47398 * 300.00145 * 12 10 8 16 16 C 1.38282 * 120.14447 * 0.25290 * 4 3 2 17 17 C 1.38523 * 119.99864 * 359.44867 * 16 4 3 18 18 O 1.36000 * 120.07523 * 180.27414 * 17 16 4 19 19 C 1.38523 * 119.99900 * 179.97438 * 2 1 3 20 20 O 1.35995 * 120.07558 * 0.02562 * 19 2 1 21 21 H 1.09001 * 109.46756 * 90.00603 * 1 2 3 22 22 H 1.09004 * 109.47530 * 210.00263 * 1 2 3 23 23 H 1.09000 * 109.47584 * 330.00190 * 1 2 3 24 24 H 1.07996 * 119.93182 * 359.97438 * 3 2 1 25 25 H 1.00901 * 110.99869 * 300.00472 * 7 5 4 26 26 H 1.00896 * 110.99543 * 63.95595 * 7 5 4 27 27 H 0.97003 * 119.99846 * 180.02562 * 11 10 8 28 28 H 1.07996 * 120.00240 * 179.70179 * 16 4 3 29 29 H 0.96704 * 114.00003 * 270.29966 * 18 17 16 30 30 H 0.96698 * 113.99604 * 89.99733 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1975 0.0000 4 6 3.5806 1.2011 0.0005 5 6 4.3290 2.5091 -0.0001 6 1 3.6714 3.3039 -0.3523 7 7 5.4934 2.4066 -0.8898 8 6 4.7921 2.8235 1.3991 9 1 4.5666 2.1442 2.2080 10 6 5.5037 3.9782 1.6466 11 7 5.7787 4.8051 0.6616 12 14 6.0771 4.3682 3.3811 13 1 6.9723 3.2852 3.8618 14 1 6.8158 5.6565 3.3804 15 1 4.8997 4.4727 4.2800 16 6 4.2781 0.0071 -0.0042 17 6 3.5916 -1.1961 0.0020 18 8 4.2760 -2.3713 0.0030 19 6 2.1996 -1.1997 0.0005 20 8 1.5212 -2.3783 0.0005 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3634 -0.8900 0.5139 23 1 -0.3634 0.8900 0.5138 24 1 1.6572 2.1322 -0.0004 25 1 6.1187 1.6760 -0.5843 26 1 5.2060 2.2601 -1.8459 27 1 6.2796 5.6173 0.8358 28 1 5.3580 0.0125 -0.0086 29 1 4.4746 -2.7115 -0.8801 30 1 1.3253 -2.7193 -0.8829 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260003181.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:20 Heat of formation + Delta-G solvation = -91.787935 kcal Electronic energy + Delta-G solvation = -15083.124413 eV Core-core repulsion = 12456.364845 eV Total energy + Delta-G solvation = -2626.759568 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.24756 -38.27896 -37.98298 -35.86227 -33.75756 -32.28889 -30.10787 -27.87480 -27.64317 -24.45527 -23.16630 -21.27497 -19.51928 -18.58907 -18.49533 -17.30169 -16.94284 -16.49868 -15.86936 -15.65053 -15.22274 -14.40977 -14.26517 -14.15782 -13.80871 -13.45301 -13.04340 -12.98728 -12.76716 -12.56136 -12.35358 -12.32808 -11.76997 -11.22392 -11.04770 -10.56652 -9.55141 -9.34091 -8.88574 -8.00557 -6.22028 0.27419 0.31847 1.42346 1.43038 1.50660 2.42955 2.65888 3.14410 3.23668 3.28875 3.91785 4.10121 4.33793 4.43565 4.50654 4.68078 4.79925 4.83693 4.98247 5.19909 5.28984 5.35446 5.49078 5.72534 5.82157 5.88211 6.14780 6.61656 6.65695 6.99925 7.06664 7.25462 7.50217 9.02359 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.034267 B = 0.007756 C = 0.007413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.919768 B = 3609.363040 C = 3776.428293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.096 4.096 3 C -0.128 4.128 4 C -0.080 4.080 5 C 0.260 3.740 6 H 0.019 0.981 7 N -0.819 5.819 8 C -0.546 4.546 9 H 0.040 0.960 10 C 0.038 3.962 11 N -0.877 5.877 12 Si 0.945 3.055 13 H -0.276 1.276 14 H -0.281 1.281 15 H -0.274 1.274 16 C -0.148 4.148 17 C 0.081 3.919 18 O -0.499 6.499 19 C 0.056 3.944 20 O -0.491 6.491 21 H 0.089 0.911 22 H 0.075 0.925 23 H 0.071 0.929 24 H 0.126 0.874 25 H 0.322 0.678 26 H 0.313 0.687 27 H 0.257 0.743 28 H 0.120 0.880 29 H 0.404 0.596 30 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.985 -11.456 -5.414 14.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.097 4.097 3 C -0.146 4.146 4 C -0.082 4.082 5 C 0.150 3.850 6 H 0.037 0.963 7 N -0.346 5.346 8 C -0.584 4.584 9 H 0.058 0.942 10 C -0.166 4.166 11 N -0.512 5.512 12 Si 0.770 3.230 13 H -0.202 1.202 14 H -0.206 1.206 15 H -0.199 1.199 16 C -0.168 4.168 17 C 0.036 3.964 18 O -0.311 6.311 19 C 0.010 3.990 20 O -0.302 6.302 21 H 0.108 0.892 22 H 0.094 0.906 23 H 0.090 0.910 24 H 0.144 0.856 25 H 0.135 0.865 26 H 0.124 0.876 27 H 0.066 0.934 28 H 0.138 0.862 29 H 0.262 0.738 30 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -7.722 -10.411 -4.046 13.579 hybrid contribution 0.334 -0.617 -0.262 0.749 sum -7.388 -11.028 -4.308 13.955 Atomic orbital electron populations 1.20704 0.88291 1.03482 1.03569 1.20380 0.98217 0.91319 0.99780 1.21037 0.93493 0.97895 1.02215 1.21360 0.94866 0.97380 0.94625 1.17876 0.87578 0.87242 0.92348 0.96282 1.59000 1.18790 1.53284 1.03510 1.21063 1.37825 1.06540 0.93022 0.94168 1.25622 0.95432 0.95866 0.99647 1.70198 1.37901 1.11027 1.32113 0.85859 0.78479 0.77380 0.81240 1.20178 1.20642 1.19903 1.21103 1.00329 0.91256 1.04062 1.18767 0.89584 0.85521 1.02541 1.84843 1.75855 1.35571 1.34853 1.18434 0.88669 0.85930 1.05931 1.84833 1.75759 1.35005 1.34623 0.89214 0.90589 0.91007 0.85643 0.86460 0.87551 0.93401 0.86162 0.73769 0.74108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.37 9.79 71.24 0.70 -1.68 16 2 C -0.10 -2.99 5.89 -19.79 -0.12 -3.11 16 3 C -0.13 -4.72 9.32 22.28 0.21 -4.52 16 4 C -0.08 -3.34 4.89 -19.86 -0.10 -3.43 16 5 C 0.26 12.90 2.85 43.42 0.12 13.02 16 6 H 0.02 1.05 8.00 -2.39 -0.02 1.03 16 7 N -0.82 -38.13 8.36 -174.94 -1.46 -39.59 16 8 C -0.55 -30.53 8.70 25.60 0.22 -30.31 16 9 H 0.04 2.30 7.74 -2.91 -0.02 2.28 16 10 C 0.04 2.16 5.39 84.65 0.46 2.61 16 11 N -0.88 -51.33 12.77 21.45 0.27 -51.06 16 12 Si 0.94 44.47 29.54 68.60 2.03 46.49 16 13 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 14 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 15 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 16 C -0.15 -5.70 9.22 22.35 0.21 -5.50 16 17 C 0.08 2.72 6.72 22.57 0.15 2.87 16 18 O -0.50 -14.46 13.29 -79.71 -1.06 -15.52 16 19 C 0.06 1.72 6.69 22.57 0.15 1.87 16 20 O -0.49 -12.31 12.33 -79.65 -0.98 -13.29 16 21 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 22 H 0.08 1.65 7.53 -2.39 -0.02 1.63 16 23 H 0.07 1.59 8.09 -2.39 -0.02 1.57 16 24 H 0.13 4.50 8.03 -2.91 -0.02 4.48 16 25 H 0.32 14.38 7.33 -89.69 -0.66 13.72 16 26 H 0.31 12.81 9.06 -89.70 -0.81 11.99 16 27 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 28 H 0.12 4.67 6.65 -2.91 -0.02 4.65 16 29 H 0.40 6.94 9.06 -74.05 -0.67 6.27 16 30 H 0.40 5.56 9.06 -74.06 -0.67 4.89 16 Total: -1.00 -68.81 264.06 -0.80 -69.62 By element: Atomic # 1 Polarization: 33.12 SS G_CDS: -1.60 Total: 31.52 kcal Atomic # 6 Polarization: -30.16 SS G_CDS: 2.00 Total: -28.16 kcal Atomic # 7 Polarization: -89.47 SS G_CDS: -1.19 Total: -90.65 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -2.04 Total: -28.81 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Total: -68.81 -0.80 -69.62 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260003181.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.171 kcal (2) G-P(sol) polarization free energy of solvation -68.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds