Wall clock time and date at job start Mon Mar 30 2020 03:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00472 * 2 1 4 4 H 1.48497 * 109.47230 * 240.00453 * 3 2 1 5 5 H 1.48496 * 109.46918 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46582 * 120.00302 * 3 2 1 7 7 C 1.37875 * 119.99636 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00340 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00076 * 0.02562 * 7 2 1 10 10 C 1.50697 * 109.46984 * 179.97438 * 9 7 2 11 11 C 1.34334 * 126.16650 * 84.95763 * 10 9 7 12 12 O 1.34746 * 107.11387 * 180.02562 * 11 10 9 13 13 C 1.33970 * 107.75591 * 0.02562 * 12 11 10 14 14 C 1.50702 * 125.61642 * 180.26668 * 13 12 11 15 15 H 1.09003 * 110.75019 * 181.70714 * 14 13 12 16 16 C 1.55310 * 110.84702 * 305.39791 * 14 13 12 17 17 C 1.54945 * 100.93694 * 152.32644 * 16 14 13 18 18 O 1.43642 * 105.14203 * 323.55784 * 17 16 14 19 19 C 1.43238 * 109.96817 * 24.42677 * 18 17 16 20 20 N 1.30254 * 108.75949 * 359.97438 * 13 12 11 21 21 H 0.97007 * 119.99729 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.47110 * 59.99643 * 9 7 2 23 23 H 1.08999 * 109.46378 * 299.99683 * 9 7 2 24 24 H 1.07997 * 126.44323 * 0.05719 * 11 10 9 25 25 H 1.08996 * 111.12377 * 270.24249 * 16 14 13 26 26 H 1.09001 * 111.12163 * 34.40861 * 16 14 13 27 27 H 1.08998 * 110.30842 * 204.63850 * 17 16 14 28 28 H 1.09000 * 110.30985 * 82.47715 * 17 16 14 29 29 H 1.09004 * 109.83214 * 238.77468 * 19 18 17 30 30 H 1.08997 * 109.90321 * 117.84891 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2844 2.7464 0.0006 6 1 3.1031 1.6961 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0017 10 6 2.2301 -3.6446 -0.0027 11 6 2.8177 -4.1862 1.0771 12 8 3.6163 -5.1787 0.6380 13 6 3.5078 -5.2304 -0.6963 14 6 4.2267 -6.2002 -1.5984 15 1 3.9843 -6.0078 -2.6436 16 6 5.7606 -6.1417 -1.3623 17 6 6.1750 -7.5795 -1.7644 18 8 5.1009 -8.4196 -1.3131 19 6 3.8917 -7.6579 -1.2161 20 7 2.6739 -4.3083 -1.0848 21 1 -0.4850 0.8401 0.0004 22 1 0.6245 -2.5563 -0.8919 23 1 0.6239 -2.5574 0.8881 24 1 2.6761 -3.8835 2.1040 25 1 6.2299 -5.4018 -2.0107 26 1 5.9896 -5.9452 -0.3149 27 1 7.1059 -7.8572 -1.2700 28 1 6.2840 -7.6532 -2.8464 29 1 3.5125 -7.6945 -0.1948 30 1 3.1452 -8.0579 -1.9022 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260028118.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:02 Heat of formation + Delta-G solvation = -58.007747 kcal Electronic energy + Delta-G solvation = -14775.511313 eV Core-core repulsion = 12150.216564 eV Total energy + Delta-G solvation = -2625.294749 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -44.26657 -40.31555 -36.40856 -35.06772 -34.19879 -31.86085 -30.43323 -28.69289 -25.48683 -24.45425 -23.29042 -22.42195 -21.13048 -18.65753 -18.26398 -17.65055 -17.31194 -16.96918 -16.57062 -15.87308 -15.34423 -14.88444 -14.44858 -14.31567 -14.11984 -13.48011 -13.06973 -12.83262 -12.76788 -12.57271 -12.46948 -12.17173 -11.99031 -11.95911 -11.43078 -11.39950 -10.63868 -10.56359 -9.61103 -8.24606 -6.37805 0.52920 1.38624 1.42089 1.50191 1.75811 1.77454 2.39975 2.77104 2.99211 3.08382 3.42274 3.77509 3.94022 4.06466 4.21072 4.28491 4.30072 4.65623 4.74414 4.78036 4.86445 4.87595 4.96193 5.08310 5.21914 5.43415 5.45685 5.67145 5.91348 6.09697 6.70866 6.86806 7.30544 8.85753 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.055438 B = 0.005676 C = 0.005439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.944104 B = 4931.693096 C = 5146.495591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.009 3.991 3 Si 0.969 3.031 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.534 4.534 8 H 0.050 0.950 9 C 0.098 3.902 10 C -0.003 4.003 11 C -0.084 4.084 12 O -0.205 6.205 13 C 0.186 3.814 14 C -0.023 4.023 15 H 0.135 0.865 16 C -0.147 4.147 17 C 0.054 3.946 18 O -0.396 6.396 19 C 0.065 3.935 20 N -0.509 5.509 21 H 0.268 0.732 22 H 0.002 0.998 23 H 0.026 0.974 24 H 0.240 0.760 25 H 0.107 0.893 26 H 0.077 0.923 27 H 0.108 0.892 28 H 0.086 0.914 29 H 0.066 0.934 30 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.651 -13.027 -1.454 17.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.190 4.190 3 Si 0.793 3.207 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.572 4.572 8 H 0.068 0.932 9 C 0.061 3.939 10 C -0.122 4.122 11 C -0.153 4.153 12 O -0.092 6.092 13 C -0.022 4.022 14 C -0.042 4.042 15 H 0.153 0.847 16 C -0.185 4.185 17 C -0.022 4.022 18 O -0.316 6.316 19 C -0.012 4.012 20 N -0.239 5.239 21 H 0.077 0.923 22 H 0.020 0.980 23 H 0.045 0.955 24 H 0.257 0.743 25 H 0.125 0.875 26 H 0.096 0.904 27 H 0.126 0.874 28 H 0.104 0.896 29 H 0.084 0.916 30 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 11.364 -13.051 -1.998 17.421 hybrid contribution -0.090 1.322 0.714 1.506 sum 11.274 -11.729 -1.284 16.319 Atomic orbital electron populations 1.70060 1.07630 1.28282 1.50659 1.25897 0.95803 1.03059 0.94235 0.85444 0.78295 0.77874 0.79100 1.19814 1.20199 1.18816 1.21237 0.92843 0.91141 1.51943 0.93171 1.17409 0.91470 0.88456 0.96582 1.22343 1.02050 0.99290 0.88504 1.25103 0.96645 0.91675 1.01834 1.84333 1.54547 1.46347 1.23970 1.26316 0.97632 0.98019 0.80186 1.21404 0.95131 0.90518 0.97174 0.84711 1.23425 0.91341 0.99814 1.03927 1.23595 0.90893 0.86802 1.00907 1.88400 1.18563 1.35750 1.88868 1.23125 0.88321 0.87595 1.02181 1.70316 1.12753 1.07950 1.32882 0.92307 0.97957 0.95544 0.74347 0.87452 0.90392 0.87427 0.89576 0.91612 0.88831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.73 13.29 21.45 0.28 -55.45 16 2 C 0.01 0.51 5.46 84.65 0.46 0.97 16 3 Si 0.97 44.21 29.54 68.60 2.03 46.23 16 4 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 5 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 6 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 7 C -0.53 -31.02 9.09 25.60 0.23 -30.79 16 8 H 0.05 2.89 7.74 -2.91 -0.02 2.86 16 9 C 0.10 5.44 5.52 29.10 0.16 5.60 16 10 C 0.00 -0.16 6.30 41.26 0.26 0.10 16 11 C -0.08 -3.24 12.08 66.93 0.81 -2.44 16 12 O -0.20 -7.27 10.57 -3.70 -0.04 -7.31 16 13 C 0.19 6.54 6.84 88.34 0.60 7.14 16 14 C -0.02 -0.56 3.53 -10.28 -0.04 -0.60 16 15 H 0.14 3.01 8.14 -2.39 -0.02 2.99 16 16 C -0.15 -2.81 6.60 32.05 0.21 -2.60 16 17 C 0.05 0.84 7.78 72.65 0.56 1.40 16 18 O -0.40 -8.69 11.36 -148.98 -1.69 -10.38 16 19 C 0.07 1.45 7.39 72.45 0.54 1.99 16 20 N -0.51 -22.70 11.29 -291.98 -3.30 -26.00 16 21 H 0.27 15.06 8.31 -92.70 -0.77 14.29 16 22 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 23 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.24 7.56 8.06 -2.91 -0.02 7.54 16 25 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.08 1.65 7.94 -2.39 -0.02 1.63 16 27 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.07 1.60 7.73 -2.38 -0.02 1.58 16 30 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -69.74 264.73 2.22 -67.52 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: 1.13 Total: 4.59 kcal Atomic # 6 Polarization: -23.01 SS G_CDS: 3.80 Total: -19.21 kcal Atomic # 7 Polarization: -78.44 SS G_CDS: -3.01 Total: -81.45 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -1.73 Total: -17.69 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Total: -69.74 2.22 -67.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260028118.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.515 kcal (2) G-P(sol) polarization free energy of solvation -69.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds