Wall clock time and date at job start Mon Mar 30 2020 03:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00575 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00325 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00036 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 H 1.08999 * 110.27798 * 302.08740 * 9 7 2 11 11 C 1.54601 * 110.30782 * 64.28804 * 9 7 2 12 12 C 1.54942 * 102.91865 * 140.86999 * 11 9 7 13 13 N 1.48527 * 103.23120 * 322.58347 * 12 11 9 14 14 C 1.47902 * 105.81945 * 39.20735 * 13 12 11 15 15 H 1.08999 * 109.91864 * 94.02025 * 14 13 12 16 16 C 1.53002 * 109.92191 * 215.32020 * 14 13 12 17 17 C 1.53003 * 109.46596 * 292.59180 * 16 14 13 18 18 F 1.39900 * 109.47240 * 59.99756 * 17 16 14 19 19 F 1.39897 * 109.47149 * 179.97438 * 17 16 14 20 20 F 1.39900 * 109.47223 * 299.99592 * 17 16 14 21 21 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 22 22 H 1.08998 * 110.72325 * 259.22392 * 11 9 7 23 23 H 1.08995 * 110.72709 * 22.51134 * 11 9 7 24 24 H 1.09005 * 110.66325 * 204.14964 * 12 11 9 25 25 H 1.09002 * 110.81168 * 81.09286 * 12 11 9 26 26 H 1.00901 * 110.99999 * 278.70012 * 13 12 11 27 27 H 1.08998 * 109.46731 * 52.58777 * 16 14 13 28 28 H 1.08994 * 109.47399 * 172.59283 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 1 0.5954 -2.5530 0.8744 11 6 0.4324 -2.6518 -1.2974 12 6 0.5958 -4.1552 -1.6349 13 7 2.0007 -4.4402 -1.2461 14 6 2.2345 -3.6842 0.0034 15 1 2.0462 -4.3242 0.8654 16 6 3.6740 -3.1668 0.0381 17 6 4.6377 -4.3487 0.1618 18 9 4.4745 -5.2004 -0.9360 19 9 5.9540 -3.8759 0.1930 20 9 4.3659 -5.0507 1.3410 21 1 -0.4850 0.8401 0.0004 22 1 -0.6156 -2.4069 -1.1252 23 1 0.8496 -2.0310 -2.0901 24 1 0.4491 -4.3282 -2.7011 25 1 -0.0959 -4.7610 -1.0495 26 1 2.6419 -4.1505 -1.9693 27 1 3.8857 -2.6200 -0.8806 28 1 3.8011 -2.5034 0.8935 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260062590.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:05 Heat of formation + Delta-G solvation = -159.930364 kcal Electronic energy + Delta-G solvation = -16219.722160 eV Core-core repulsion = 13048.150975 eV Total energy + Delta-G solvation = -3171.571185 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.088 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -49.55449 -47.09493 -46.98596 -38.15713 -32.80116 -31.81799 -28.97345 -26.65268 -24.35483 -22.64239 -20.63964 -19.33103 -17.96442 -17.77010 -17.27893 -15.47346 -15.08830 -14.59975 -14.22503 -14.01471 -13.93202 -13.53319 -13.32769 -13.16959 -13.14073 -12.75257 -11.96296 -11.67203 -11.50558 -11.07173 -11.05396 -10.60564 -10.50316 -10.20381 -9.81152 -9.55622 -8.82319 -8.52603 -7.82403 -6.15364 -4.20677 3.21329 3.29502 3.30980 3.37492 4.31378 4.42894 4.62225 4.67096 5.06023 5.18764 5.58937 5.72110 5.95851 6.18947 6.22734 6.37416 6.49589 6.59423 6.95012 7.05608 7.35821 7.48882 7.72093 7.86189 7.98450 8.23751 8.80890 9.45660 10.94156 Molecular weight = 223.09amu Principal moments of inertia in cm(-1) A = 0.028782 B = 0.010930 C = 0.008649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.612864 B = 2561.163229 C = 3236.733536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.067 3.933 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.534 4.534 8 H 0.069 0.931 9 C 0.031 3.969 10 H 0.037 0.963 11 C -0.124 4.124 12 C 0.032 3.968 13 N -0.673 5.673 14 C 0.073 3.927 15 H 0.075 0.925 16 C -0.150 4.150 17 C 0.441 3.559 18 F -0.180 7.180 19 F -0.198 7.198 20 F -0.190 7.190 21 H 0.261 0.739 22 H 0.061 0.939 23 H 0.054 0.946 24 H 0.057 0.943 25 H 0.066 0.934 26 H 0.330 0.670 27 H 0.109 0.891 28 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.371 -5.803 -1.253 8.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.137 4.137 3 Si 0.716 3.284 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.572 4.572 8 H 0.086 0.914 9 C 0.012 3.988 10 H 0.055 0.945 11 C -0.164 4.164 12 C -0.097 4.097 13 N -0.301 5.301 14 C -0.037 4.037 15 H 0.094 0.906 16 C -0.188 4.188 17 C 0.387 3.613 18 F -0.161 7.161 19 F -0.180 7.180 20 F -0.172 7.172 21 H 0.071 0.929 22 H 0.080 0.920 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.085 0.915 26 H 0.146 0.854 27 H 0.127 0.873 28 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.126 -6.388 -0.940 8.244 hybrid contribution 0.586 1.814 -0.296 1.929 sum 5.712 -4.574 -1.235 7.421 Atomic orbital electron populations 1.69976 1.05991 1.26699 1.49387 1.25007 0.94806 0.99160 0.94677 0.86657 0.79971 0.83636 0.78163 1.20681 1.21183 1.19763 1.21421 0.93194 0.90247 1.52312 0.91361 1.19824 0.92631 0.91662 0.94726 0.94472 1.22984 1.01194 0.92681 0.99491 1.23180 0.90415 0.97270 0.98843 1.63123 1.04423 1.56654 1.05930 1.22439 0.92398 0.95302 0.93511 0.90647 1.23408 0.94331 0.93094 1.08011 1.21251 0.80603 0.85987 0.73425 1.93161 1.95251 1.73468 1.54229 1.93127 1.40156 1.88425 1.96301 1.93125 1.93624 1.81403 1.49043 0.92924 0.92032 0.92688 0.92471 0.91544 0.85426 0.87319 0.86081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.19 12.61 55.43 0.70 -23.49 15 2 C 0.07 1.73 5.34 -17.82 -0.10 1.64 15 3 Si 0.89 20.16 29.54 -169.99 -5.02 15.14 15 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 15 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 15 7 C -0.53 -13.19 7.50 -34.44 -0.26 -13.45 15 8 H 0.07 1.59 4.70 -52.49 -0.25 1.34 15 9 C 0.03 0.72 2.87 -90.41 -0.26 0.46 15 10 H 0.04 0.95 8.14 -51.93 -0.42 0.53 15 11 C -0.12 -2.70 5.74 -24.86 -0.14 -2.84 15 12 C 0.03 0.59 7.55 -1.90 -0.01 0.57 15 13 N -0.67 -12.29 6.25 -103.12 -0.64 -12.94 15 14 C 0.07 1.43 3.31 -66.64 -0.22 1.21 15 15 H 0.08 1.49 7.67 -51.93 -0.40 1.09 15 16 C -0.15 -2.65 3.20 -26.73 -0.09 -2.74 15 17 C 0.44 7.37 3.16 37.16 0.12 7.49 15 18 F -0.18 -3.05 15.29 2.25 0.03 -3.01 15 19 F -0.20 -3.25 17.32 2.25 0.04 -3.22 15 20 F -0.19 -3.29 16.71 2.25 0.04 -3.25 15 21 H 0.26 6.88 8.31 -40.82 -0.34 6.54 15 22 H 0.06 1.43 8.12 -51.93 -0.42 1.01 15 23 H 0.05 1.27 7.86 -51.93 -0.41 0.86 15 24 H 0.06 0.93 8.14 -51.93 -0.42 0.51 15 25 H 0.07 1.19 8.14 -51.93 -0.42 0.76 15 26 H 0.33 5.77 7.58 -39.29 -0.30 5.48 15 27 H 0.11 1.91 7.22 -51.93 -0.38 1.53 15 28 H 0.12 2.19 6.85 -51.93 -0.36 1.83 15 LS Contribution 240.45 15.07 3.62 3.62 Total: -1.00 -26.04 240.45 -5.10 -31.14 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -2.91 Total: 3.68 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: -0.96 Total: -7.67 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: 0.05 Total: -36.43 kcal Atomic # 9 Polarization: -9.59 SS G_CDS: 0.11 Total: -9.48 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -26.04 -5.10 -31.14 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260062590.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.795 kcal (2) G-P(sol) polarization free energy of solvation -26.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds