Wall clock time and date at job start Mon Mar 30 2020 03:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00575 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00325 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00036 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 H 1.08999 * 110.27798 * 302.08740 * 9 7 2 11 11 C 1.54601 * 110.30782 * 64.28804 * 9 7 2 12 12 C 1.54942 * 102.91865 * 140.86999 * 11 9 7 13 13 N 1.48527 * 103.23120 * 322.58347 * 12 11 9 14 14 C 1.47902 * 105.81945 * 39.20735 * 13 12 11 15 15 H 1.08999 * 109.91864 * 94.02025 * 14 13 12 16 16 C 1.53002 * 109.92191 * 215.32020 * 14 13 12 17 17 C 1.53003 * 109.46596 * 292.59180 * 16 14 13 18 18 F 1.39900 * 109.47240 * 59.99756 * 17 16 14 19 19 F 1.39897 * 109.47149 * 179.97438 * 17 16 14 20 20 F 1.39900 * 109.47223 * 299.99592 * 17 16 14 21 21 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 22 22 H 1.08998 * 110.72325 * 259.22392 * 11 9 7 23 23 H 1.08995 * 110.72709 * 22.51134 * 11 9 7 24 24 H 1.09005 * 110.66325 * 204.14964 * 12 11 9 25 25 H 1.09002 * 110.81168 * 81.09286 * 12 11 9 26 26 H 1.00901 * 110.99999 * 278.70012 * 13 12 11 27 27 H 1.08998 * 109.46731 * 52.58777 * 16 14 13 28 28 H 1.08994 * 109.47399 * 172.59283 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 1 0.5954 -2.5530 0.8744 11 6 0.4324 -2.6518 -1.2974 12 6 0.5958 -4.1552 -1.6349 13 7 2.0007 -4.4402 -1.2461 14 6 2.2345 -3.6842 0.0034 15 1 2.0462 -4.3242 0.8654 16 6 3.6740 -3.1668 0.0381 17 6 4.6377 -4.3487 0.1618 18 9 4.4745 -5.2004 -0.9360 19 9 5.9540 -3.8759 0.1930 20 9 4.3659 -5.0507 1.3410 21 1 -0.4850 0.8401 0.0004 22 1 -0.6156 -2.4069 -1.1252 23 1 0.8496 -2.0310 -2.0901 24 1 0.4491 -4.3282 -2.7011 25 1 -0.0959 -4.7610 -1.0495 26 1 2.6419 -4.1505 -1.9693 27 1 3.8857 -2.6200 -0.8806 28 1 3.8011 -2.5034 0.8935 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260062590.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:04 Heat of formation + Delta-G solvation = -175.703343 kcal Electronic energy + Delta-G solvation = -16220.406128 eV Core-core repulsion = 13048.150975 eV Total energy + Delta-G solvation = -3172.255153 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.088 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -50.90668 -48.43808 -48.33992 -39.79787 -34.71100 -33.33726 -30.76182 -28.21680 -26.21784 -24.07779 -22.23134 -21.07427 -19.32053 -19.18500 -18.83956 -17.23415 -16.72580 -16.32064 -15.78833 -15.59143 -15.28087 -14.89632 -14.74451 -14.59511 -14.51641 -14.47833 -13.62050 -13.26109 -13.20888 -12.88394 -12.61704 -12.32594 -12.12385 -11.91129 -11.56196 -11.29303 -10.69377 -10.49940 -9.39631 -8.13188 -6.22619 1.41906 1.45014 1.52366 1.99442 2.42652 3.01884 3.18911 3.23520 3.29642 3.55181 4.09979 4.20432 4.45880 4.59207 4.62502 4.83385 4.89315 5.01104 5.23614 5.32730 5.56448 5.67651 5.84936 6.04793 6.26985 6.55522 6.89045 7.46516 8.96373 Molecular weight = 223.09amu Principal moments of inertia in cm(-1) A = 0.028782 B = 0.010930 C = 0.008649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.612864 B = 2561.163229 C = 3236.733536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.014 3.986 3 Si 0.947 3.053 4 H -0.279 1.279 5 H -0.292 1.292 6 H -0.261 1.261 7 C -0.536 4.536 8 H 0.084 0.916 9 C 0.023 3.977 10 H 0.002 0.998 11 C -0.117 4.117 12 C 0.044 3.956 13 N -0.665 5.665 14 C 0.082 3.918 15 H 0.074 0.926 16 C -0.145 4.145 17 C 0.452 3.548 18 F -0.178 7.178 19 F -0.193 7.193 20 F -0.192 7.192 21 H 0.258 0.742 22 H 0.036 0.964 23 H 0.038 0.962 24 H 0.083 0.917 25 H 0.072 0.928 26 H 0.338 0.662 27 H 0.113 0.887 28 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.787 -6.311 -1.788 9.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.186 4.186 3 Si 0.774 3.226 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.186 1.186 7 C -0.574 4.574 8 H 0.102 0.898 9 C 0.004 3.996 10 H 0.020 0.980 11 C -0.157 4.157 12 C -0.085 4.085 13 N -0.293 5.293 14 C -0.028 4.028 15 H 0.092 0.908 16 C -0.183 4.183 17 C 0.399 3.601 18 F -0.160 7.160 19 F -0.175 7.175 20 F -0.174 7.174 21 H 0.067 0.933 22 H 0.055 0.945 23 H 0.057 0.943 24 H 0.102 0.898 25 H 0.090 0.910 26 H 0.154 0.846 27 H 0.132 0.868 28 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 6.565 -6.910 -1.479 9.646 hybrid contribution 0.130 1.938 -0.114 1.946 sum 6.696 -4.972 -1.593 8.491 Atomic orbital electron populations 1.70114 1.07446 1.27076 1.51214 1.25768 0.95458 1.02410 0.94929 0.85713 0.79034 0.79841 0.78061 1.20451 1.21853 1.18558 1.21880 0.94132 0.90816 1.50530 0.89838 1.19809 0.93108 0.92860 0.93869 0.98005 1.22798 0.99263 0.95235 0.98379 1.23129 0.90483 0.94305 1.00627 1.63108 1.04560 1.55963 1.05701 1.22232 0.92638 0.93826 0.94145 0.90836 1.23255 0.93402 0.93549 1.08140 1.20902 0.80479 0.85421 0.73340 1.93167 1.95261 1.73378 1.54161 1.93142 1.39690 1.88367 1.96275 1.93128 1.93663 1.81403 1.49216 0.93335 0.94465 0.94267 0.89823 0.90958 0.84571 0.86830 0.86407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.36 12.61 21.45 0.27 -51.09 15 2 C 0.01 0.71 5.34 84.66 0.45 1.16 15 3 Si 0.95 41.12 29.54 68.60 2.03 43.14 15 4 H -0.28 -11.92 7.11 99.48 0.71 -11.21 15 5 H -0.29 -12.90 7.11 99.48 0.71 -12.19 15 6 H -0.26 -10.77 7.11 99.48 0.71 -10.06 15 7 C -0.54 -26.23 7.50 25.60 0.19 -26.04 15 8 H 0.08 3.75 4.70 -2.92 -0.01 3.74 15 9 C 0.02 1.08 2.87 -10.66 -0.03 1.05 15 10 H 0.00 0.09 8.14 -2.39 -0.02 0.07 15 11 C -0.12 -5.11 5.74 31.80 0.18 -4.92 15 12 C 0.04 1.52 7.55 86.65 0.65 2.17 15 13 N -0.66 -22.74 6.25 -480.18 -3.00 -25.74 15 14 C 0.08 3.06 3.31 45.06 0.15 3.21 15 15 H 0.07 2.80 7.67 -2.39 -0.02 2.79 15 16 C -0.14 -4.83 3.20 30.60 0.10 -4.73 15 17 C 0.45 13.98 3.16 71.98 0.23 14.21 15 18 F -0.18 -5.54 15.29 44.97 0.69 -4.85 15 19 F -0.19 -5.81 17.32 44.97 0.78 -5.03 15 20 F -0.19 -6.22 16.71 44.97 0.75 -5.47 15 21 H 0.26 13.90 8.31 -92.71 -0.77 13.13 15 22 H 0.04 1.77 8.12 -2.39 -0.02 1.75 15 23 H 0.04 1.80 7.86 -2.39 -0.02 1.78 15 24 H 0.08 2.49 8.14 -2.38 -0.02 2.47 15 25 H 0.07 2.45 8.14 -2.39 -0.02 2.43 15 26 H 0.34 10.84 7.58 -89.69 -0.68 10.16 15 27 H 0.11 3.70 7.22 -2.39 -0.02 3.68 15 28 H 0.12 4.04 6.85 -2.39 -0.02 4.02 15 Total: -1.00 -54.32 240.45 3.94 -50.37 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: 0.51 Total: 12.55 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: 1.92 Total: -13.89 kcal Atomic # 7 Polarization: -74.09 SS G_CDS: -2.73 Total: -76.83 kcal Atomic # 9 Polarization: -17.57 SS G_CDS: 2.22 Total: -15.35 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.14 kcal Total: -54.32 3.94 -50.37 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260062590.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.332 kcal (2) G-P(sol) polarization free energy of solvation -54.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds