Wall clock time and date at job start Mon Mar 30 2020 03:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.08999 * 110.29537 * 300.98167 * 9 7 2 11 11 C 1.54260 * 110.32182 * 63.10928 * 9 7 2 12 12 C 1.54377 * 105.06203 * 118.89524 * 11 9 7 13 13 N 1.48557 * 104.59725 * 23.84984 * 12 11 9 14 14 C 1.48720 * 104.28964 * 320.57613 * 13 12 11 15 15 H 1.08997 * 110.38965 * 280.63983 * 14 13 12 16 16 C 1.52995 * 110.51189 * 158.13851 * 14 13 12 17 17 C 1.53001 * 109.46640 * 69.86732 * 16 14 13 18 18 F 1.39903 * 109.47334 * 60.00234 * 17 16 14 19 19 F 1.39904 * 109.47246 * 179.97438 * 17 16 14 20 20 F 1.39894 * 109.47388 * 299.99765 * 17 16 14 21 21 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 22 22 H 1.08998 * 110.32411 * 237.78938 * 11 9 7 23 23 H 1.09005 * 110.32697 * 359.97438 * 11 9 7 24 24 H 1.08999 * 110.41351 * 142.63245 * 12 11 9 25 25 H 1.09004 * 110.41280 * 264.95674 * 12 11 9 26 26 H 1.00900 * 111.00567 * 200.95737 * 13 12 11 27 27 H 1.09006 * 109.47498 * 189.86411 * 16 14 13 28 28 H 1.09001 * 109.47571 * 309.86924 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6102 -2.5616 0.8848 11 6 0.4111 -2.6385 -1.2809 12 6 0.9594 -3.8991 -1.9834 13 7 1.5745 -4.6981 -0.8924 14 6 2.2365 -3.6872 -0.0255 15 1 3.1884 -3.3804 -0.4587 16 6 2.4450 -4.2440 1.3842 17 6 3.5163 -5.3358 1.3479 18 9 4.7178 -4.7948 0.8777 19 9 3.7076 -5.8446 2.6370 20 9 3.1038 -6.3659 0.4960 21 1 -0.4850 0.8400 0.0004 22 1 -0.6419 -2.7713 -1.0328 23 1 0.5434 -1.7628 -1.9164 24 1 0.1483 -4.4564 -2.4519 25 1 1.7094 -3.6250 -2.7254 26 1 2.2462 -5.3553 -1.2598 27 1 2.7666 -3.4415 2.0481 28 1 1.5090 -4.6656 1.7506 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260062600.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:07 Heat of formation + Delta-G solvation = -184.519812 kcal Electronic energy + Delta-G solvation = -16042.141022 eV Core-core repulsion = 12869.503558 eV Total energy + Delta-G solvation = -3172.637464 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.088 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -51.01258 -48.52319 -48.46950 -39.50826 -34.81272 -33.26336 -30.99857 -28.49440 -26.24761 -23.95109 -21.89393 -21.05578 -19.50324 -19.26835 -18.72980 -17.83704 -16.92767 -16.30761 -15.82330 -15.64620 -15.33899 -14.97979 -14.86025 -14.64027 -14.62906 -14.20558 -13.62981 -13.15079 -13.10142 -12.87031 -12.67216 -12.46908 -12.39591 -12.06346 -11.70168 -11.15335 -10.79479 -10.49220 -9.50037 -8.14070 -6.24328 1.40594 1.44085 1.53979 1.89208 2.42720 2.94304 3.08395 3.19291 3.21237 3.49580 4.12383 4.16840 4.33596 4.46566 4.62790 4.70927 4.85304 4.97726 5.21202 5.34018 5.62026 5.67329 5.82353 5.93382 6.37390 6.52808 6.86225 7.44169 8.95013 Molecular weight = 223.09amu Principal moments of inertia in cm(-1) A = 0.033258 B = 0.009244 C = 0.007939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.689383 B = 3028.221714 C = 3525.963339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.017 3.983 3 Si 0.950 3.050 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.281 1.281 7 C -0.531 4.531 8 H 0.055 0.945 9 C 0.053 3.947 10 H 0.012 0.988 11 C -0.090 4.090 12 C 0.043 3.957 13 N -0.663 5.663 14 C 0.073 3.927 15 H 0.046 0.954 16 C -0.140 4.140 17 C 0.457 3.543 18 F -0.192 7.192 19 F -0.188 7.188 20 F -0.179 7.179 21 H 0.261 0.739 22 H 0.033 0.967 23 H 0.039 0.961 24 H 0.086 0.914 25 H 0.038 0.962 26 H 0.337 0.663 27 H 0.113 0.887 28 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.180 -8.727 0.481 10.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.182 4.182 3 Si 0.776 3.224 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.207 1.207 7 C -0.570 4.570 8 H 0.073 0.927 9 C 0.034 3.966 10 H 0.030 0.970 11 C -0.129 4.129 12 C -0.086 4.086 13 N -0.293 5.293 14 C -0.037 4.037 15 H 0.064 0.936 16 C -0.179 4.179 17 C 0.403 3.597 18 F -0.174 7.174 19 F -0.170 7.170 20 F -0.161 7.161 21 H 0.070 0.930 22 H 0.052 0.948 23 H 0.058 0.942 24 H 0.105 0.895 25 H 0.056 0.944 26 H 0.154 0.846 27 H 0.131 0.869 28 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 4.449 -8.769 0.888 9.873 hybrid contribution 1.118 1.211 -0.521 1.728 sum 5.567 -7.558 0.367 9.394 Atomic orbital electron populations 1.70095 1.07176 1.27266 1.50920 1.25674 0.95548 1.02213 0.94811 0.85627 0.79197 0.80050 0.77530 1.19116 1.20869 1.20691 1.21536 0.92921 0.91555 1.50958 0.92662 1.19285 0.92265 0.90893 0.94153 0.97031 1.22050 0.97872 0.95051 0.97952 1.22885 0.98570 0.94293 0.92830 1.63713 1.33137 1.14527 1.17926 1.22470 0.97307 0.92560 0.91370 0.93568 1.22813 0.97916 0.96476 1.00661 1.20694 0.82582 0.83335 0.73052 1.93153 1.49561 1.85913 1.88755 1.93155 1.95795 1.88761 1.39272 1.93138 1.90070 1.61794 1.71055 0.93000 0.94839 0.94183 0.89532 0.94388 0.84650 0.86858 0.86469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.58 12.47 21.45 0.27 -51.31 15 2 C 0.02 0.91 5.12 84.65 0.43 1.34 15 3 Si 0.95 42.31 29.54 68.60 2.03 44.33 15 4 H -0.27 -11.53 7.11 99.48 0.71 -10.82 15 5 H -0.28 -12.46 7.11 99.48 0.71 -11.75 15 6 H -0.28 -12.34 7.11 99.48 0.71 -11.63 15 7 C -0.53 -27.78 8.34 25.60 0.21 -27.57 15 8 H 0.06 2.85 7.57 -2.91 -0.02 2.83 15 9 C 0.05 2.52 2.51 -10.64 -0.03 2.49 15 10 H 0.01 0.60 7.86 -2.39 -0.02 0.58 15 11 C -0.09 -4.13 5.80 31.49 0.18 -3.95 15 12 C 0.04 1.56 7.47 86.45 0.65 2.21 15 13 N -0.66 -22.96 6.67 -478.63 -3.19 -26.16 15 14 C 0.07 2.79 2.59 45.03 0.12 2.91 15 15 H 0.05 1.85 7.22 -2.39 -0.02 1.83 15 16 C -0.14 -4.56 4.91 30.59 0.15 -4.41 15 17 C 0.46 13.55 3.16 71.98 0.23 13.78 15 18 F -0.19 -6.00 16.71 44.97 0.75 -5.25 15 19 F -0.19 -5.39 17.32 44.97 0.78 -4.61 15 20 F -0.18 -5.23 15.02 44.97 0.68 -4.56 15 21 H 0.26 14.02 8.31 -92.71 -0.77 13.25 15 22 H 0.03 1.57 8.14 -2.39 -0.02 1.55 15 23 H 0.04 2.01 7.34 -2.38 -0.02 1.99 15 24 H 0.09 2.75 8.14 -2.39 -0.02 2.73 15 25 H 0.04 1.31 8.14 -2.39 -0.02 1.29 15 26 H 0.34 10.31 7.42 -89.69 -0.67 9.64 15 27 H 0.11 3.67 8.14 -2.38 -0.02 3.65 15 28 H 0.12 3.65 8.14 -2.39 -0.02 3.63 15 Total: -1.00 -55.72 245.37 3.76 -51.95 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: 0.51 Total: 8.79 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: 1.94 Total: -13.20 kcal Atomic # 7 Polarization: -74.54 SS G_CDS: -2.92 Total: -77.46 kcal Atomic # 9 Polarization: -16.62 SS G_CDS: 2.21 Total: -14.41 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.33 kcal Total: -55.72 3.76 -51.95 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260062600.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.566 kcal (2) G-P(sol) polarization free energy of solvation -55.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds