Wall clock time and date at job start Mon Mar 30 2020 03:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00575 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00325 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00036 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 H 1.09007 * 110.27524 * 60.64103 * 9 7 2 11 11 C 1.54598 * 110.31247 * 298.54799 * 9 7 2 12 12 C 1.54938 * 102.91948 * 219.13052 * 11 9 7 13 13 N 1.48527 * 103.23087 * 37.41018 * 12 11 9 14 14 C 1.47904 * 105.82226 * 320.79464 * 13 12 11 15 15 H 1.09000 * 109.91733 * 265.97244 * 14 13 12 16 16 C 1.52997 * 109.91546 * 144.68209 * 14 13 12 17 17 C 1.52994 * 109.47476 * 67.41075 * 16 14 13 18 18 F 1.39903 * 109.46976 * 59.99772 * 17 16 14 19 19 F 1.39904 * 109.47391 * 179.97438 * 17 16 14 20 20 F 1.39903 * 109.47289 * 299.99917 * 17 16 14 21 21 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 22 22 H 1.08995 * 110.71949 * 337.48716 * 11 9 7 23 23 H 1.08996 * 110.72230 * 100.59308 * 11 9 7 24 24 H 1.09000 * 110.66957 * 155.85174 * 12 11 9 25 25 H 1.09001 * 110.66454 * 278.81017 * 12 11 9 26 26 H 1.00894 * 111.00403 * 200.27529 * 13 12 11 27 27 H 1.09003 * 109.47133 * 187.41362 * 16 14 13 28 28 H 1.09003 * 109.47368 * 307.40692 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 1 0.6242 -2.5773 -0.8832 11 6 0.3880 -2.6149 1.2827 12 6 0.5390 -4.1078 1.6686 13 7 1.9562 -4.4031 1.3366 14 6 2.2332 -3.6832 0.0747 15 1 2.0745 -4.3477 -0.7745 16 6 3.6733 -3.1664 0.0748 17 6 4.6402 -4.3508 0.0183 18 9 4.4087 -5.0864 -1.1490 19 9 5.9570 -3.8783 0.0178 20 9 4.4389 -5.1708 1.1338 21 1 -0.4850 0.8401 0.0004 22 1 0.7780 -1.9713 2.0712 23 1 -0.6528 -2.3724 1.0683 24 1 0.3555 -4.2503 2.7336 25 1 -0.1346 -4.7280 1.0772 26 1 2.1027 -5.3953 1.2265 27 1 3.8302 -2.5275 -0.7943 28 1 3.8537 -2.5933 0.9843 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260062613.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:09 Heat of formation + Delta-G solvation = -157.900656 kcal Electronic energy + Delta-G solvation = -16208.247517 eV Core-core repulsion = 13036.764346 eV Total energy + Delta-G solvation = -3171.483171 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.088 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.55409 -47.09738 -46.98817 -37.97903 -32.80828 -31.75956 -29.16581 -26.71637 -24.33324 -22.66383 -20.22361 -19.24752 -18.01862 -17.75782 -17.23742 -15.80792 -15.32828 -14.59556 -14.15647 -14.03818 -13.82813 -13.52474 -13.27621 -13.19191 -13.10528 -12.20230 -12.15715 -11.64925 -11.48333 -11.06403 -10.93007 -10.70899 -10.44039 -10.13622 -9.73291 -9.41448 -8.77828 -8.48673 -7.89233 -6.09678 -4.13244 3.26749 3.34392 3.36911 3.40117 4.37521 4.50571 4.61722 4.71879 4.98053 5.24667 5.73167 5.82760 5.91463 6.08705 6.22844 6.30133 6.54388 6.67515 6.99789 7.11512 7.33402 7.56441 7.78545 7.92295 7.99897 8.29364 8.85742 9.51973 11.00128 Molecular weight = 223.09amu Principal moments of inertia in cm(-1) A = 0.028866 B = 0.010923 C = 0.008632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.777277 B = 2562.666093 C = 3242.987323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.065 3.935 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.526 4.526 8 H 0.070 0.930 9 C 0.049 3.951 10 H 0.033 0.967 11 C -0.090 4.090 12 C 0.031 3.969 13 N -0.667 5.667 14 C 0.073 3.927 15 H 0.038 0.962 16 C -0.130 4.130 17 C 0.437 3.563 18 F -0.196 7.196 19 F -0.197 7.197 20 F -0.181 7.181 21 H 0.260 0.740 22 H 0.062 0.938 23 H 0.060 0.940 24 H 0.065 0.935 25 H 0.026 0.974 26 H 0.322 0.678 27 H 0.115 0.885 28 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.712 -7.058 0.526 8.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.138 4.138 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.564 4.564 8 H 0.088 0.912 9 C 0.030 3.970 10 H 0.051 0.949 11 C -0.129 4.129 12 C -0.098 4.098 13 N -0.295 5.295 14 C -0.037 4.037 15 H 0.056 0.944 16 C -0.168 4.168 17 C 0.383 3.617 18 F -0.178 7.178 19 F -0.178 7.178 20 F -0.163 7.163 21 H 0.070 0.930 22 H 0.081 0.919 23 H 0.079 0.921 24 H 0.083 0.917 25 H 0.044 0.956 26 H 0.137 0.863 27 H 0.133 0.867 28 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.886 -6.479 0.987 8.174 hybrid contribution 0.088 0.157 -0.677 0.700 sum 4.974 -6.322 0.311 8.050 Atomic orbital electron populations 1.69972 1.05968 1.26643 1.49881 1.24988 0.94816 0.99132 0.94821 0.86637 0.79989 0.83577 0.78119 1.20693 1.21266 1.19738 1.21396 0.93321 0.90003 1.51658 0.91184 1.19468 0.91765 0.91093 0.94628 0.94871 1.22392 1.00235 0.90926 0.99348 1.23138 0.88067 0.99260 0.99297 1.62979 1.22099 1.12399 1.32052 1.22240 0.94147 0.97308 0.89983 0.94385 1.23163 0.93182 0.92573 1.07929 1.21467 0.81075 0.86233 0.72884 1.93115 1.94437 1.80038 1.50224 1.93124 1.40005 1.88418 1.96295 1.93150 1.94718 1.75214 1.53181 0.92982 0.91889 0.92138 0.91672 0.95587 0.86297 0.86696 0.86428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.38 12.43 55.43 0.69 -23.69 15 2 C 0.06 1.71 5.32 -17.82 -0.09 1.61 15 3 Si 0.89 20.42 29.54 -169.99 -5.02 15.39 15 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 15 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 15 7 C -0.53 -13.26 7.54 -34.44 -0.26 -13.52 15 8 H 0.07 1.68 4.70 -52.49 -0.25 1.43 15 9 C 0.05 1.15 2.92 -90.41 -0.26 0.89 15 10 H 0.03 0.84 8.14 -51.93 -0.42 0.42 15 11 C -0.09 -2.02 5.59 -24.87 -0.14 -2.16 15 12 C 0.03 0.58 7.55 -1.90 -0.01 0.56 15 13 N -0.67 -12.28 6.03 -103.13 -0.62 -12.90 15 14 C 0.07 1.44 3.19 -66.64 -0.21 1.23 15 15 H 0.04 0.72 7.67 -51.93 -0.40 0.33 15 16 C -0.13 -2.40 3.49 -26.74 -0.09 -2.49 15 17 C 0.44 7.42 3.16 37.15 0.12 7.53 15 18 F -0.20 -3.32 16.71 2.25 0.04 -3.28 15 19 F -0.20 -3.31 17.32 2.25 0.04 -3.28 15 20 F -0.18 -3.10 15.26 2.25 0.03 -3.07 15 21 H 0.26 6.89 8.31 -40.82 -0.34 6.55 15 22 H 0.06 1.53 7.86 -51.93 -0.41 1.12 15 23 H 0.06 1.42 8.04 -51.93 -0.42 1.00 15 24 H 0.06 1.11 8.14 -51.93 -0.42 0.69 15 25 H 0.03 0.45 8.14 -51.93 -0.42 0.03 15 26 H 0.32 5.34 8.12 -39.29 -0.32 5.02 15 27 H 0.11 2.12 6.81 -51.93 -0.35 1.77 15 28 H 0.12 2.29 7.40 -51.93 -0.38 1.91 15 LS Contribution 240.69 15.07 3.63 3.63 Total: -1.00 -26.20 240.69 -5.11 -31.30 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -2.93 Total: 2.24 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: -0.96 Total: -6.35 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.07 Total: -36.59 kcal Atomic # 9 Polarization: -9.73 SS G_CDS: 0.11 Total: -9.62 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -26.20 -5.11 -31.30 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260062613.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.597 kcal (2) G-P(sol) polarization free energy of solvation -26.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds