Wall clock time and date at job start Mon Mar 30 2020 03:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00575 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00325 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00036 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 H 1.09007 * 110.27524 * 60.64103 * 9 7 2 11 11 C 1.54598 * 110.31247 * 298.54799 * 9 7 2 12 12 C 1.54938 * 102.91948 * 219.13052 * 11 9 7 13 13 N 1.48527 * 103.23087 * 37.41018 * 12 11 9 14 14 C 1.47904 * 105.82226 * 320.79464 * 13 12 11 15 15 H 1.09000 * 109.91733 * 265.97244 * 14 13 12 16 16 C 1.52997 * 109.91546 * 144.68209 * 14 13 12 17 17 C 1.52994 * 109.47476 * 67.41075 * 16 14 13 18 18 F 1.39903 * 109.46976 * 59.99772 * 17 16 14 19 19 F 1.39904 * 109.47391 * 179.97438 * 17 16 14 20 20 F 1.39903 * 109.47289 * 299.99917 * 17 16 14 21 21 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 22 22 H 1.08995 * 110.71949 * 337.48716 * 11 9 7 23 23 H 1.08996 * 110.72230 * 100.59308 * 11 9 7 24 24 H 1.09000 * 110.66957 * 155.85174 * 12 11 9 25 25 H 1.09001 * 110.66454 * 278.81017 * 12 11 9 26 26 H 1.00894 * 111.00403 * 200.27529 * 13 12 11 27 27 H 1.09003 * 109.47133 * 187.41362 * 16 14 13 28 28 H 1.09003 * 109.47368 * 307.40692 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 1 0.6242 -2.5773 -0.8832 11 6 0.3880 -2.6149 1.2827 12 6 0.5390 -4.1078 1.6686 13 7 1.9562 -4.4031 1.3366 14 6 2.2332 -3.6832 0.0747 15 1 2.0745 -4.3477 -0.7745 16 6 3.6733 -3.1664 0.0748 17 6 4.6402 -4.3508 0.0183 18 9 4.4087 -5.0864 -1.1490 19 9 5.9570 -3.8783 0.0178 20 9 4.4389 -5.1708 1.1338 21 1 -0.4850 0.8401 0.0004 22 1 0.7780 -1.9713 2.0712 23 1 -0.6528 -2.3724 1.0683 24 1 0.3555 -4.2503 2.7336 25 1 -0.1346 -4.7280 1.0772 26 1 2.1027 -5.3953 1.2265 27 1 3.8302 -2.5275 -0.7943 28 1 3.8537 -2.5933 0.9843 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260062613.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:09 Heat of formation + Delta-G solvation = -173.777528 kcal Electronic energy + Delta-G solvation = -16208.935990 eV Core-core repulsion = 13036.764346 eV Total energy + Delta-G solvation = -3172.171644 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.088 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -50.91953 -48.45389 -48.34983 -39.63062 -34.72481 -33.31057 -30.96544 -28.31146 -26.21347 -24.12701 -21.86223 -20.97029 -19.39570 -19.17855 -18.85438 -17.43304 -17.01109 -16.48339 -15.63196 -15.51494 -15.27994 -14.88814 -14.73985 -14.55225 -14.53766 -13.98711 -13.84941 -13.40234 -13.07519 -12.74943 -12.63171 -12.49956 -12.08569 -11.87810 -11.53490 -11.19544 -10.67727 -10.47538 -9.38904 -8.09937 -6.17623 1.44426 1.47172 1.55040 1.99972 2.46134 3.06491 3.18511 3.23346 3.32636 3.52223 4.15580 4.26500 4.34711 4.52568 4.68241 4.74986 4.92399 5.09306 5.20258 5.37490 5.54564 5.72585 5.85888 6.10031 6.33718 6.60886 6.89772 7.50288 8.99784 Molecular weight = 223.09amu Principal moments of inertia in cm(-1) A = 0.028866 B = 0.010923 C = 0.008632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.777277 B = 2562.666093 C = 3242.987323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.013 3.987 3 Si 0.947 3.053 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.264 1.264 7 C -0.531 4.531 8 H 0.082 0.918 9 C 0.040 3.960 10 H 0.004 0.996 11 C -0.086 4.086 12 C 0.043 3.957 13 N -0.666 5.666 14 C 0.080 3.920 15 H 0.048 0.952 16 C -0.127 4.127 17 C 0.450 3.550 18 F -0.193 7.193 19 F -0.193 7.193 20 F -0.179 7.179 21 H 0.258 0.742 22 H 0.037 0.963 23 H 0.039 0.961 24 H 0.084 0.916 25 H 0.042 0.958 26 H 0.338 0.662 27 H 0.113 0.887 28 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.883 -7.873 0.777 9.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.186 4.186 3 Si 0.773 3.227 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.188 1.188 7 C -0.569 4.569 8 H 0.099 0.901 9 C 0.021 3.979 10 H 0.022 0.978 11 C -0.124 4.124 12 C -0.086 4.086 13 N -0.296 5.296 14 C -0.030 4.030 15 H 0.066 0.934 16 C -0.165 4.165 17 C 0.396 3.604 18 F -0.175 7.175 19 F -0.175 7.175 20 F -0.160 7.160 21 H 0.067 0.933 22 H 0.056 0.944 23 H 0.058 0.942 24 H 0.103 0.897 25 H 0.061 0.939 26 H 0.155 0.845 27 H 0.131 0.869 28 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 6.075 -7.313 1.238 9.588 hybrid contribution -0.293 0.380 -0.769 0.906 sum 5.783 -6.933 0.469 9.041 Atomic orbital electron populations 1.70100 1.07309 1.27043 1.51491 1.25730 0.95501 1.02288 0.95034 0.85715 0.78990 0.79893 0.78068 1.20366 1.21735 1.18807 1.21846 0.94123 0.90799 1.50134 0.90056 1.19442 0.92424 0.92245 0.93783 0.97766 1.22177 0.98557 0.93533 0.98167 1.23043 0.88512 0.96299 1.00758 1.62955 1.21956 1.13514 1.31176 1.22053 0.93866 0.96091 0.91027 0.93435 1.22987 0.92901 0.93222 1.07398 1.21017 0.80756 0.85591 0.72999 1.93128 1.94426 1.79861 1.50065 1.93136 1.39655 1.88414 1.96290 1.93157 1.94713 1.75054 1.53112 0.93327 0.94368 0.94210 0.89732 0.93939 0.84513 0.86863 0.87362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.62 12.43 21.45 0.27 -51.35 15 2 C 0.01 0.71 5.32 84.66 0.45 1.16 15 3 Si 0.95 41.89 29.54 68.60 2.03 43.91 15 4 H -0.28 -12.07 7.11 99.48 0.71 -11.36 15 5 H -0.29 -13.00 7.11 99.48 0.71 -12.29 15 6 H -0.26 -11.19 7.11 99.48 0.71 -10.48 15 7 C -0.53 -26.73 7.54 25.60 0.19 -26.53 15 8 H 0.08 3.82 4.70 -2.92 -0.01 3.81 15 9 C 0.04 1.87 2.92 -10.66 -0.03 1.84 15 10 H 0.00 0.22 8.14 -2.38 -0.02 0.20 15 11 C -0.09 -3.85 5.59 31.80 0.18 -3.67 15 12 C 0.04 1.49 7.55 86.65 0.65 2.15 15 13 N -0.67 -22.92 6.03 -480.21 -2.89 -25.81 15 14 C 0.08 3.01 3.19 45.06 0.14 3.15 15 15 H 0.05 1.71 7.67 -2.39 -0.02 1.69 15 16 C -0.13 -4.45 3.49 30.59 0.11 -4.34 15 17 C 0.45 14.14 3.16 71.98 0.23 14.36 15 18 F -0.19 -6.00 16.71 44.97 0.75 -5.25 15 19 F -0.19 -6.03 17.32 44.97 0.78 -5.25 15 20 F -0.18 -5.60 15.26 44.97 0.69 -4.92 15 21 H 0.26 13.95 8.31 -92.71 -0.77 13.18 15 22 H 0.04 1.87 7.86 -2.39 -0.02 1.85 15 23 H 0.04 1.91 8.04 -2.39 -0.02 1.89 15 24 H 0.08 2.67 8.14 -2.39 -0.02 2.65 15 25 H 0.04 1.37 8.14 -2.39 -0.02 1.35 15 26 H 0.34 10.08 8.12 -89.70 -0.73 9.35 15 27 H 0.11 4.01 6.81 -2.39 -0.02 4.00 15 28 H 0.11 4.04 7.40 -2.39 -0.02 4.03 15 Total: -1.00 -54.69 240.69 4.00 -50.69 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: 0.46 Total: 9.86 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: 1.92 Total: -11.88 kcal Atomic # 7 Polarization: -74.54 SS G_CDS: -2.63 Total: -77.16 kcal Atomic # 9 Polarization: -17.63 SS G_CDS: 2.22 Total: -15.42 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.91 kcal Total: -54.69 4.00 -50.69 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260062613.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.087 kcal (2) G-P(sol) polarization free energy of solvation -54.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds