Wall clock time and date at job start Mon Mar 30 2020 03:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38201 * 119.97374 * 2 1 4 4 C 1.38153 * 120.11049 * 180.02562 * 3 2 1 5 5 C 1.50697 * 119.97590 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.47216 * 144.97265 * 5 4 3 7 7 N 1.46899 * 109.47038 * 24.97557 * 5 4 3 8 8 C 1.50698 * 109.47221 * 264.97874 * 5 4 3 9 9 H 1.08004 * 119.99776 * 359.97438 * 8 5 4 10 10 C 1.37873 * 120.00243 * 179.97438 * 8 5 4 11 11 N 1.31515 * 119.99744 * 359.97438 * 10 8 5 12 12 Si 1.86803 * 120.00404 * 179.97438 * 10 8 5 13 13 H 1.48500 * 109.46916 * 89.99639 * 12 10 8 14 14 H 1.48501 * 109.47096 * 210.00006 * 12 10 8 15 15 H 1.48501 * 109.46577 * 330.00146 * 12 10 8 16 16 C 1.38797 * 120.05322 * 359.97438 * 4 3 2 17 17 O 1.35898 * 120.02645 * 179.97438 * 16 4 3 18 18 C 1.38615 * 119.94590 * 0.02562 * 16 4 3 19 19 C 1.38659 * 119.89101 * 359.97438 * 18 16 4 20 20 O 1.35900 * 120.02749 * 179.97438 * 19 18 16 21 21 H 1.09001 * 109.47355 * 89.99672 * 1 2 3 22 22 H 1.08995 * 109.47437 * 209.99723 * 1 2 3 23 23 H 1.09007 * 109.46953 * 329.99732 * 1 2 3 24 24 H 1.08000 * 119.94468 * 359.97438 * 3 2 1 25 25 H 1.00900 * 111.00480 * 176.04664 * 7 5 4 26 26 H 1.00899 * 110.99874 * 300.00344 * 7 5 4 27 27 H 0.97000 * 120.00191 * 179.97438 * 11 10 8 28 28 H 0.96704 * 113.99386 * 270.01610 * 17 16 4 29 29 H 1.08004 * 120.05142 * 179.72861 * 18 16 4 30 30 H 0.96701 * 113.99378 * 90.00236 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1972 0.0000 4 6 3.5790 1.2005 -0.0005 5 6 4.3288 2.5077 0.0001 6 1 5.2397 2.4037 0.5895 7 7 3.4836 3.5567 0.5859 8 6 4.6860 2.8825 -1.4152 9 1 4.3992 2.2383 -2.2332 10 6 5.3791 4.0477 -1.6657 11 7 5.7279 4.8324 -0.6696 12 14 5.8226 4.5121 -3.4199 13 1 4.7299 5.3284 -4.0072 14 1 7.0827 5.2977 -3.4205 15 1 6.0076 3.2790 -4.2265 16 6 4.2769 0.0008 -0.0005 17 8 5.6359 0.0046 -0.0016 18 6 3.5867 -1.2013 -0.0005 19 6 2.2001 -1.2020 0.0000 20 8 1.5206 -2.3789 -0.0005 21 1 -0.3634 0.0001 -1.0277 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5139 24 1 1.6561 2.1317 -0.0004 25 1 3.9864 4.4286 0.6568 26 1 2.6321 3.6723 0.0570 27 1 6.2158 5.6521 -0.8458 28 1 6.0284 0.0056 -0.8854 29 1 4.1281 -2.1359 -0.0050 30 1 1.3243 -2.7200 0.8828 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260066150.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:26 Heat of formation + Delta-G solvation = -71.729582 kcal Electronic energy + Delta-G solvation = -15229.055973 eV Core-core repulsion = 12603.166201 eV Total energy + Delta-G solvation = -2625.889772 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.67473 -37.44428 -35.64169 -34.30627 -31.60890 -31.16636 -28.61157 -26.36004 -25.47118 -23.03513 -21.37497 -19.75046 -18.43674 -16.81791 -16.38033 -15.98485 -15.14638 -14.68251 -14.21639 -14.06616 -13.60065 -12.97082 -12.85800 -12.69935 -12.11811 -12.00163 -11.65519 -11.33070 -11.06050 -10.76779 -10.72129 -10.26359 -10.09533 -9.98158 -9.50114 -8.71473 -8.13055 -7.68073 -7.21432 -6.12818 -4.30860 1.76760 1.87329 3.18457 3.26499 3.29328 4.08682 4.30688 4.46007 5.08024 5.10868 5.29815 5.41032 5.61414 5.84814 5.91411 6.09623 6.18529 6.42725 6.50824 6.60066 6.79735 7.04136 7.08769 7.30512 7.67366 7.73291 7.95443 8.04220 8.36713 8.62939 8.88408 9.07681 9.41211 10.84350 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.034901 B = 0.008353 C = 0.007880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.071294 B = 3351.156488 C = 3552.423753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.125 4.125 3 C -0.086 4.086 4 C -0.052 4.052 5 C 0.242 3.758 6 H 0.058 0.942 7 N -0.851 5.851 8 C -0.545 4.545 9 H 0.053 0.947 10 C 0.068 3.932 11 N -0.890 5.890 12 Si 0.897 3.103 13 H -0.280 1.280 14 H -0.285 1.285 15 H -0.274 1.274 16 C 0.110 3.890 17 O -0.492 6.492 18 C -0.173 4.173 19 C 0.083 3.917 20 O -0.498 6.498 21 H 0.065 0.935 22 H 0.060 0.940 23 H 0.063 0.937 24 H 0.130 0.870 25 H 0.356 0.644 26 H 0.310 0.690 27 H 0.266 0.734 28 H 0.389 0.611 29 H 0.123 0.877 30 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.390 -8.215 1.002 10.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.125 4.125 3 C -0.104 4.104 4 C -0.053 4.053 5 C 0.133 3.867 6 H 0.076 0.924 7 N -0.381 5.381 8 C -0.584 4.584 9 H 0.072 0.928 10 C -0.135 4.135 11 N -0.529 5.529 12 Si 0.725 3.275 13 H -0.206 1.206 14 H -0.210 1.210 15 H -0.199 1.199 16 C 0.065 3.935 17 O -0.302 6.302 18 C -0.192 4.192 19 C 0.039 3.961 20 O -0.307 6.307 21 H 0.083 0.917 22 H 0.079 0.921 23 H 0.082 0.918 24 H 0.147 0.853 25 H 0.173 0.827 26 H 0.119 0.881 27 H 0.076 0.924 28 H 0.244 0.756 29 H 0.141 0.859 30 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -6.321 -8.442 1.706 10.683 hybrid contribution 0.590 0.683 -1.981 2.177 sum -5.731 -7.759 -0.274 9.650 Atomic orbital electron populations 1.20565 0.91355 1.01913 1.01914 1.20158 0.96226 0.92670 1.03464 1.20679 0.93592 0.96701 0.99459 1.20919 0.93786 0.96640 0.93991 1.17901 0.91192 0.83948 0.93709 0.92402 1.59562 1.09018 1.13774 1.55768 1.21738 1.36925 1.06745 0.93026 0.92826 1.25014 0.94794 0.96295 0.97408 1.69742 1.39278 1.13205 1.30692 0.86515 0.77956 0.78575 0.84471 1.20630 1.21036 1.19871 1.18091 0.83209 0.91040 1.01140 1.84709 1.15758 1.96298 1.33428 1.21477 0.93662 0.98140 1.05912 1.17869 0.89073 0.84461 1.04695 1.84831 1.76493 1.36606 1.32764 0.91675 0.92138 0.91826 0.85273 0.82727 0.88053 0.92383 0.75554 0.85901 0.76770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.37 9.79 36.00 0.35 -1.01 16 2 C -0.12 -2.14 5.89 -104.45 -0.62 -2.76 16 3 C -0.09 -1.68 8.91 -39.63 -0.35 -2.03 16 4 C -0.05 -1.15 5.01 -104.45 -0.52 -1.67 16 5 C 0.24 6.03 2.67 -70.02 -0.19 5.85 16 6 H 0.06 1.63 7.69 -51.93 -0.40 1.23 16 7 N -0.85 -20.19 8.79 -6.65 -0.06 -20.24 16 8 C -0.54 -14.30 8.71 -34.44 -0.30 -14.60 16 9 H 0.05 1.42 7.74 -52.48 -0.41 1.01 16 10 C 0.07 1.79 5.38 -17.82 -0.10 1.69 16 11 N -0.89 -24.25 11.53 55.43 0.64 -23.61 16 12 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 13 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 14 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 15 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 16 C 0.11 2.25 6.67 -39.24 -0.26 1.99 16 17 O -0.49 -9.78 12.63 -19.42 -0.25 -10.03 16 18 C -0.17 -3.10 9.93 -39.29 -0.39 -3.49 16 19 C 0.08 1.41 6.67 -39.24 -0.26 1.15 16 20 O -0.50 -7.10 12.54 -19.43 -0.24 -7.34 16 21 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 22 H 0.06 0.72 7.53 -51.93 -0.39 0.32 16 23 H 0.06 0.79 8.09 -51.93 -0.42 0.37 16 24 H 0.13 2.43 6.28 -52.49 -0.33 2.11 16 25 H 0.36 9.04 7.08 -39.29 -0.28 8.76 16 26 H 0.31 6.89 7.20 -39.29 -0.28 6.61 16 27 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 28 H 0.39 6.41 9.06 45.56 0.41 6.82 16 29 H 0.12 1.96 8.06 -52.48 -0.42 1.54 16 30 H 0.38 3.55 9.06 45.56 0.41 3.96 16 LS Contribution 260.22 15.07 3.92 3.92 Total: -1.00 -29.52 260.22 -5.30 -34.83 By element: Atomic # 1 Polarization: 23.47 SS G_CDS: -1.66 Total: 21.81 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: -2.64 Total: -14.88 kcal Atomic # 7 Polarization: -44.44 SS G_CDS: 0.58 Total: -43.86 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -0.49 Total: -17.37 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -29.52 -5.30 -34.83 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260066150.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.903 kcal (2) G-P(sol) polarization free energy of solvation -29.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds