Wall clock time and date at job start Mon Mar 30 2020 03:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30633 * 1 3 3 Si 1.86798 * 119.99931 * 2 1 4 4 H 1.48496 * 109.47243 * 240.00000 * 3 2 1 5 5 H 1.48502 * 109.46968 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46458 * 119.99827 * 3 2 1 7 7 C 1.40339 * 119.99976 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99947 * 180.02562 * 7 2 1 9 9 C 1.39810 * 119.99861 * 0.02562 * 7 2 1 10 10 N 1.32807 * 125.80078 * 359.95506 * 9 7 2 11 11 C 1.33063 * 108.65035 * 179.76397 * 10 9 7 12 12 C 1.35936 * 107.97711 * 0.44226 * 11 10 9 13 13 C 1.50699 * 126.31847 * 179.83385 * 12 11 10 14 14 H 1.09005 * 109.48884 * 339.73775 * 13 12 11 15 15 C 1.53096 * 109.48331 * 99.76508 * 13 12 11 16 16 C 1.53172 * 109.16237 * 177.59097 * 15 13 12 17 17 C 1.53174 * 109.03844 * 303.01800 * 16 15 13 18 18 C 1.53093 * 109.16375 * 56.98496 * 17 16 15 19 19 O 1.42905 * 109.41141 * 302.39044 * 18 17 16 20 20 O 1.34601 * 107.36053 * 359.56211 * 12 11 10 21 21 H 0.96995 * 120.00067 * 359.97438 * 1 2 3 22 22 H 1.08004 * 126.00848 * 180.29970 * 11 10 9 23 23 H 1.08996 * 109.51862 * 297.49616 * 15 13 12 24 24 H 1.08993 * 109.51849 * 57.68662 * 15 13 12 25 25 H 1.09002 * 109.54386 * 183.15042 * 16 15 13 26 26 H 1.09006 * 109.62035 * 62.93555 * 16 15 13 27 27 H 1.09001 * 109.52606 * 297.07957 * 17 16 15 28 28 H 1.09003 * 109.57599 * 176.91695 * 17 16 15 29 29 H 1.08996 * 109.48657 * 182.40855 * 18 17 16 30 30 H 1.09002 * 109.48315 * 62.36673 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.0940 1.6964 -1.2125 5 1 1.2752 2.7464 0.0006 6 1 3.0940 1.6963 1.2126 7 6 2.0080 -1.2154 -0.0005 8 1 3.0880 -1.2154 -0.0001 9 6 1.3089 -2.4261 -0.0016 10 7 -0.0123 -2.5603 -0.0014 11 6 -0.3083 -3.8576 -0.0079 12 6 0.8590 -4.5543 -0.0023 13 6 1.0031 -6.0543 -0.0030 14 1 0.0764 -6.5089 0.3475 15 6 1.3032 -6.5379 -1.4242 16 6 1.5078 -8.0558 -1.4062 17 6 2.6346 -8.3965 -0.4263 18 6 2.2831 -7.8413 0.9565 19 8 2.0758 -6.4304 0.8631 20 8 1.8622 -3.6570 -0.0022 21 1 -0.4850 0.8400 0.0004 22 1 -1.3013 -4.2823 -0.0139 23 1 0.4662 -6.2908 -2.0773 24 1 2.2079 -6.0527 -1.7905 25 1 1.7769 -8.3993 -2.4051 26 1 0.5873 -8.5454 -1.0881 27 1 3.5663 -7.9488 -0.7724 28 1 2.7510 -9.4786 -0.3654 29 1 3.1009 -8.0435 1.6481 30 1 1.3732 -8.3191 1.3195 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260085599.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:23 Heat of formation + Delta-G solvation = -44.398559 kcal Electronic energy + Delta-G solvation = -15141.823401 eV Core-core repulsion = 12517.118791 eV Total energy + Delta-G solvation = -2624.704610 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.96941 -38.81336 -33.82618 -33.36074 -32.40244 -31.59677 -28.64468 -26.15135 -23.99262 -22.90955 -20.90688 -20.07111 -19.60545 -17.35406 -16.04140 -15.73760 -15.35369 -14.68360 -14.56510 -14.22337 -14.00732 -13.42099 -12.80391 -12.51418 -12.38560 -11.69292 -11.33867 -11.27474 -11.15374 -10.94474 -10.71865 -10.46450 -10.38559 -10.11573 -9.62658 -9.22617 -9.07584 -8.14960 -7.31070 -6.64820 -4.57961 2.90950 3.07633 3.10640 3.26311 3.88429 4.20382 4.47403 4.66852 4.95359 5.01885 5.10145 5.32186 5.40259 5.42851 5.65542 5.72220 5.87935 5.96284 6.07464 6.12674 6.17760 6.26141 6.57896 6.64405 6.85868 7.11924 7.53142 7.78568 8.06682 8.19410 8.57394 8.81528 10.01537 10.28816 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.060081 B = 0.006414 C = 0.006173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.928983 B = 4364.301215 C = 4535.058344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.728 5.728 2 C 0.076 3.924 3 Si 0.927 3.073 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.435 4.435 8 H 0.091 0.909 9 C 0.332 3.668 10 N -0.538 5.538 11 C 0.009 3.991 12 C -0.200 4.200 13 C 0.207 3.793 14 H 0.066 0.934 15 C -0.146 4.146 16 C -0.122 4.122 17 C -0.156 4.156 18 C 0.058 3.942 19 O -0.372 6.372 20 O -0.232 6.232 21 H 0.279 0.721 22 H 0.145 0.855 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.088 0.912 30 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.099 -10.425 -1.228 10.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.353 5.353 2 C -0.149 4.149 3 Si 0.751 3.249 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.470 4.470 8 H 0.109 0.891 9 C 0.149 3.851 10 N -0.268 5.268 11 C -0.137 4.137 12 C -0.255 4.255 13 C 0.150 3.850 14 H 0.084 0.916 15 C -0.184 4.184 16 C -0.159 4.159 17 C -0.194 4.194 18 C -0.019 4.019 19 O -0.291 6.291 20 O -0.128 6.128 21 H 0.090 0.910 22 H 0.163 0.837 23 H 0.091 0.909 24 H 0.090 0.910 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.106 0.894 30 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.622 -9.629 -1.127 9.830 hybrid contribution 0.566 -0.215 -0.169 0.628 sum 2.187 -9.844 -1.296 10.167 Atomic orbital electron populations 1.69990 1.07220 1.28696 1.29345 1.25866 0.94989 1.00781 0.93301 0.86070 0.79670 0.79176 0.80024 1.18761 1.20045 1.18736 1.18118 0.94467 0.86003 1.48425 0.89063 1.22305 0.86960 0.83206 0.92650 1.71469 1.11962 1.14063 1.29288 1.22917 0.96595 0.91566 1.02656 1.22005 0.87468 0.89503 1.26535 1.19883 0.89077 0.87358 0.88714 0.91642 1.22256 1.03202 0.94808 0.98169 1.21616 0.98422 0.96490 0.99390 1.22198 0.99724 1.00685 0.96799 1.22517 1.00432 0.82798 0.96125 1.88130 1.53680 1.21116 1.66174 1.84423 1.36422 1.16511 1.75440 0.90994 0.83743 0.90851 0.90976 0.91773 0.92036 0.91114 0.91400 0.89361 0.93654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -20.14 11.88 55.57 0.66 -19.48 16 2 C 0.08 1.99 5.50 -17.27 -0.10 1.90 16 3 Si 0.93 18.97 29.56 -169.99 -5.03 13.94 16 4 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 5 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 6 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 7 C -0.44 -12.35 9.45 -38.20 -0.36 -12.71 16 8 H 0.09 2.41 7.85 -52.49 -0.41 2.00 16 9 C 0.33 9.94 7.74 -16.54 -0.13 9.81 16 10 N -0.54 -16.01 9.43 -13.43 -0.13 -16.13 16 11 C 0.01 0.24 11.81 -17.84 -0.21 0.03 16 12 C -0.20 -4.98 6.30 -35.13 -0.22 -5.20 16 13 C 0.21 4.04 3.13 -27.83 -0.09 3.95 16 14 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 15 C -0.15 -2.42 5.40 -26.59 -0.14 -2.57 16 16 C -0.12 -1.53 6.03 -26.55 -0.16 -1.69 16 17 C -0.16 -1.91 6.14 -26.59 -0.16 -2.07 16 18 C 0.06 0.82 6.84 37.21 0.25 1.07 16 19 O -0.37 -7.36 10.39 -36.45 -0.38 -7.73 16 20 O -0.23 -6.63 10.82 1.88 0.02 -6.61 16 21 H 0.28 6.91 8.29 -40.82 -0.34 6.57 16 22 H 0.15 3.15 8.06 -52.48 -0.42 2.72 16 23 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 24 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 259.22 15.07 3.91 3.91 Total: -1.00 -32.56 259.22 -6.03 -38.59 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -3.77 Total: 1.00 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: -1.32 Total: -7.49 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: 0.53 Total: -35.62 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.36 Total: -14.34 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.94 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -32.56 -6.03 -38.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260085599.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.808 kcal (2) G-P(sol) polarization free energy of solvation -32.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds