Wall clock time and date at job start Mon Mar 30 2020 03:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30633 * 1 3 3 Si 1.86798 * 119.99931 * 2 1 4 4 H 1.48496 * 109.47243 * 240.00000 * 3 2 1 5 5 H 1.48502 * 109.46968 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46458 * 119.99827 * 3 2 1 7 7 C 1.40339 * 119.99976 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99947 * 180.02562 * 7 2 1 9 9 C 1.39810 * 119.99861 * 0.02562 * 7 2 1 10 10 N 1.32807 * 125.80078 * 359.95506 * 9 7 2 11 11 C 1.33063 * 108.65035 * 179.76397 * 10 9 7 12 12 C 1.35936 * 107.97711 * 0.44226 * 11 10 9 13 13 C 1.50699 * 126.31847 * 179.83385 * 12 11 10 14 14 H 1.09005 * 109.48884 * 339.73775 * 13 12 11 15 15 C 1.53096 * 109.48331 * 99.76508 * 13 12 11 16 16 C 1.53172 * 109.16237 * 177.59097 * 15 13 12 17 17 C 1.53174 * 109.03844 * 303.01800 * 16 15 13 18 18 C 1.53093 * 109.16375 * 56.98496 * 17 16 15 19 19 O 1.42905 * 109.41141 * 302.39044 * 18 17 16 20 20 O 1.34601 * 107.36053 * 359.56211 * 12 11 10 21 21 H 0.96995 * 120.00067 * 359.97438 * 1 2 3 22 22 H 1.08004 * 126.00848 * 180.29970 * 11 10 9 23 23 H 1.08996 * 109.51862 * 297.49616 * 15 13 12 24 24 H 1.08993 * 109.51849 * 57.68662 * 15 13 12 25 25 H 1.09002 * 109.54386 * 183.15042 * 16 15 13 26 26 H 1.09006 * 109.62035 * 62.93555 * 16 15 13 27 27 H 1.09001 * 109.52606 * 297.07957 * 17 16 15 28 28 H 1.09003 * 109.57599 * 176.91695 * 17 16 15 29 29 H 1.08996 * 109.48657 * 182.40855 * 18 17 16 30 30 H 1.09002 * 109.48315 * 62.36673 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.0940 1.6964 -1.2125 5 1 1.2752 2.7464 0.0006 6 1 3.0940 1.6963 1.2126 7 6 2.0080 -1.2154 -0.0005 8 1 3.0880 -1.2154 -0.0001 9 6 1.3089 -2.4261 -0.0016 10 7 -0.0123 -2.5603 -0.0014 11 6 -0.3083 -3.8576 -0.0079 12 6 0.8590 -4.5543 -0.0023 13 6 1.0031 -6.0543 -0.0030 14 1 0.0764 -6.5089 0.3475 15 6 1.3032 -6.5379 -1.4242 16 6 1.5078 -8.0558 -1.4062 17 6 2.6346 -8.3965 -0.4263 18 6 2.2831 -7.8413 0.9565 19 8 2.0758 -6.4304 0.8631 20 8 1.8622 -3.6570 -0.0022 21 1 -0.4850 0.8400 0.0004 22 1 -1.3013 -4.2823 -0.0139 23 1 0.4662 -6.2908 -2.0773 24 1 2.2079 -6.0527 -1.7905 25 1 1.7769 -8.3993 -2.4051 26 1 0.5873 -8.5454 -1.0881 27 1 3.5663 -7.9488 -0.7724 28 1 2.7510 -9.4786 -0.3654 29 1 3.1009 -8.0435 1.6481 30 1 1.3732 -8.3191 1.3195 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260085599.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:23 Heat of formation + Delta-G solvation = -68.337905 kcal Electronic energy + Delta-G solvation = -15142.861489 eV Core-core repulsion = 12517.118791 eV Total energy + Delta-G solvation = -2625.742698 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.05234 -40.14526 -35.85836 -34.62876 -34.45459 -33.09144 -30.52817 -27.88494 -25.34698 -24.39676 -22.97303 -21.74205 -21.06489 -19.42695 -17.76660 -17.16460 -17.08135 -16.59291 -16.02270 -15.64830 -15.42045 -14.76464 -14.70452 -14.01374 -13.58961 -13.53135 -13.07818 -12.95768 -12.66210 -12.38489 -12.08307 -11.99819 -11.73520 -11.66878 -11.30798 -11.14784 -10.49725 -10.27068 -9.35535 -8.62358 -6.69845 1.02969 1.39679 1.56364 1.56499 2.16836 2.38755 2.74753 2.96073 3.26501 3.88563 3.91116 3.94383 4.08553 4.22283 4.23143 4.52472 4.52991 4.73754 4.82689 4.85031 4.92032 5.05418 5.10829 5.11387 5.22164 5.38388 5.70169 5.93435 6.11821 6.39614 6.48843 6.70808 7.91309 8.34322 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.060081 B = 0.006414 C = 0.006173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.928983 B = 4364.301215 C = 4535.058344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.030 3.970 3 Si 1.015 2.985 4 H -0.253 1.253 5 H -0.260 1.260 6 H -0.255 1.255 7 C -0.470 4.470 8 H 0.098 0.902 9 C 0.294 3.706 10 N -0.573 5.573 11 C -0.018 4.018 12 C -0.193 4.193 13 C 0.206 3.794 14 H 0.093 0.907 15 C -0.142 4.142 16 C -0.114 4.114 17 C -0.153 4.153 18 C 0.048 3.952 19 O -0.411 6.411 20 O -0.254 6.254 21 H 0.290 0.710 22 H 0.179 0.821 23 H 0.076 0.924 24 H 0.043 0.957 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.056 0.944 28 H 0.104 0.896 29 H 0.102 0.898 30 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.438 -11.549 -1.382 11.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.192 4.192 3 Si 0.832 3.168 4 H -0.177 1.177 5 H -0.184 1.184 6 H -0.178 1.178 7 C -0.505 4.505 8 H 0.116 0.884 9 C 0.111 3.889 10 N -0.305 5.305 11 C -0.162 4.162 12 C -0.248 4.248 13 C 0.148 3.852 14 H 0.110 0.890 15 C -0.180 4.180 16 C -0.152 4.152 17 C -0.190 4.190 18 C -0.028 4.028 19 O -0.331 6.331 20 O -0.150 6.150 21 H 0.100 0.900 22 H 0.196 0.804 23 H 0.095 0.905 24 H 0.062 0.938 25 H 0.102 0.898 26 H 0.102 0.898 27 H 0.075 0.925 28 H 0.123 0.877 29 H 0.120 0.880 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.944 -10.814 -1.282 11.061 hybrid contribution 0.443 -0.028 -0.093 0.453 sum 2.387 -10.841 -1.374 11.186 Atomic orbital electron populations 1.70074 1.09257 1.30573 1.29558 1.27076 0.95934 1.04408 0.91751 0.84796 0.78219 0.73270 0.80487 1.17716 1.18394 1.17848 1.18669 0.95161 0.86863 1.49768 0.88429 1.22884 0.87640 0.84079 0.94317 1.71371 1.12102 1.16292 1.30738 1.23432 0.98502 0.90668 1.03579 1.23139 0.86596 0.91802 1.23218 1.20092 0.90525 0.83859 0.90725 0.88982 1.22182 1.01929 0.97930 0.95999 1.21616 0.99724 0.92977 1.00852 1.22195 0.98819 1.02699 0.95304 1.22888 1.02112 0.79918 0.97868 1.88047 1.53707 1.24989 1.66368 1.84419 1.37974 1.17027 1.75628 0.89974 0.80438 0.90510 0.93819 0.89815 0.89779 0.92536 0.87733 0.87958 0.91471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -43.56 11.88 21.90 0.26 -43.30 16 2 C 0.03 1.57 5.50 85.38 0.47 2.04 16 3 Si 1.02 38.77 29.56 68.60 2.03 40.80 16 4 H -0.25 -9.21 7.11 99.48 0.71 -8.50 16 5 H -0.26 -9.18 7.11 99.48 0.71 -8.47 16 6 H -0.25 -9.31 7.11 99.48 0.71 -8.61 16 7 C -0.47 -27.63 9.45 23.16 0.22 -27.42 16 8 H 0.10 5.34 7.85 -2.91 -0.02 5.32 16 9 C 0.29 18.43 7.74 84.93 0.66 19.08 16 10 N -0.57 -35.43 9.43 -309.37 -2.92 -38.35 16 11 C -0.02 -0.92 11.81 83.97 0.99 0.07 16 12 C -0.19 -9.83 6.30 25.15 0.16 -9.67 16 13 C 0.21 7.83 3.13 29.88 0.09 7.93 16 14 H 0.09 2.99 8.14 -2.38 -0.02 2.97 16 15 C -0.14 -4.56 5.40 30.68 0.17 -4.39 16 16 C -0.11 -2.50 6.03 30.71 0.19 -2.31 16 17 C -0.15 -3.23 6.14 30.68 0.19 -3.04 16 18 C 0.05 1.22 6.84 72.01 0.49 1.71 16 19 O -0.41 -15.96 10.39 -147.82 -1.54 -17.49 16 20 O -0.25 -15.15 10.82 -10.67 -0.12 -15.27 16 21 H 0.29 14.51 8.29 -92.71 -0.77 13.74 16 22 H 0.18 7.73 8.06 -2.91 -0.02 7.70 16 23 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 24 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 27 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -74.51 259.22 2.47 -72.03 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 1.13 Total: 17.58 kcal Atomic # 6 Polarization: -19.62 SS G_CDS: 3.62 Total: -16.00 kcal Atomic # 7 Polarization: -79.00 SS G_CDS: -2.66 Total: -81.66 kcal Atomic # 8 Polarization: -31.11 SS G_CDS: -1.65 Total: -32.76 kcal Atomic # 14 Polarization: 38.77 SS G_CDS: 2.03 Total: 40.80 kcal Total: -74.51 2.47 -72.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260085599.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.696 kcal (2) G-P(sol) polarization free energy of solvation -74.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds