Wall clock time and date at job start Mon Mar 30 2020 03:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 110.45584 * 2 1 4 4 N 1.29916 * 125.07601 * 298.56683 * 3 2 1 5 5 C 1.36281 * 108.61689 * 179.84269 * 4 3 2 6 6 C 1.41260 * 126.67872 * 180.18658 * 5 4 3 7 7 H 1.07998 * 120.00007 * 0.30231 * 6 5 4 8 8 C 1.39733 * 120.00009 * 180.29337 * 6 5 4 9 9 N 1.30991 * 119.99883 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99900 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47168 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.47060 * 120.00262 * 10 8 6 13 13 H 1.48498 * 109.47389 * 240.00483 * 10 8 6 14 14 C 1.38794 * 106.64707 * 0.41190 * 5 4 3 15 15 O 1.34060 * 125.08304 * 118.87567 * 3 2 1 16 16 C 1.54512 * 110.51195 * 122.74821 * 2 1 3 17 17 C 1.54474 * 104.06131 * 118.64727 * 16 2 1 18 18 O 1.44427 * 104.80458 * 23.97905 * 17 16 2 19 19 C 1.44426 * 105.27356 * 319.48632 * 18 17 16 20 20 H 1.09001 * 109.46675 * 181.15523 * 1 2 3 21 21 H 1.09005 * 109.47168 * 301.14914 * 1 2 3 22 22 H 1.08999 * 109.47233 * 61.15680 * 1 2 3 23 23 H 0.97003 * 119.99892 * 179.97438 * 9 8 6 24 24 H 1.08005 * 126.74932 * 179.72748 * 14 5 4 25 25 H 1.08999 * 110.51561 * 237.28987 * 16 2 1 26 26 H 1.09000 * 110.51089 * 359.86268 * 16 2 1 27 27 H 1.09006 * 110.37557 * 265.14427 * 17 16 2 28 28 H 1.09004 * 110.37781 * 142.81270 * 17 16 2 29 29 H 1.08996 * 110.36828 * 159.34352 * 19 18 17 30 30 H 1.08994 * 110.37464 * 281.67938 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0566 1.4120 0.0000 4 7 1.8412 2.2891 -0.9338 5 6 2.4680 3.4502 -0.5930 6 6 2.4793 4.6523 -1.3349 7 1 1.9488 4.7125 -2.2736 8 6 3.1768 5.7635 -0.8541 9 7 3.8206 5.6904 0.2843 10 14 3.1924 7.3528 -1.8355 11 1 2.3957 7.1762 -3.0763 12 1 2.6018 8.4442 -1.0198 13 1 4.5914 7.7018 -2.1906 14 6 3.0975 3.2203 0.6225 15 8 2.8223 1.9488 0.9606 16 6 2.0714 -0.7828 1.2171 17 6 2.8757 -1.9428 0.5897 18 8 3.2399 -1.4703 -0.7256 19 6 2.0713 -0.7797 -1.2188 20 1 -0.3633 -1.0275 0.0207 21 1 -0.3634 0.5316 0.8795 22 1 -0.3634 0.4958 -0.9002 23 1 4.3052 6.4617 0.6179 24 1 3.6921 3.9245 1.1857 25 1 2.7219 -0.1494 1.8201 26 1 1.2490 -1.1678 1.8202 27 1 2.2564 -2.8367 0.5139 28 1 3.7689 -2.1482 1.1799 29 1 2.3464 -0.0913 -2.0178 30 1 1.3286 -1.4950 -1.5720 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260085953.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:16 Heat of formation + Delta-G solvation = -42.366321 kcal Electronic energy + Delta-G solvation = -15381.175411 eV Core-core repulsion = 12756.558926 eV Total energy + Delta-G solvation = -2624.616486 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.28347 -39.13327 -34.07450 -33.89106 -32.35644 -29.59617 -28.04867 -26.13238 -25.35142 -22.75316 -21.54691 -20.33319 -18.91557 -17.31699 -15.97947 -15.65214 -15.27199 -15.03784 -14.61179 -14.40570 -13.50678 -13.21855 -12.75216 -12.52167 -12.14489 -11.98121 -11.38568 -11.32068 -11.27831 -10.86320 -10.75713 -10.52274 -10.30923 -9.93932 -9.90020 -9.61415 -8.99060 -8.85009 -7.10605 -6.63769 -4.34961 3.01462 3.14443 3.19329 3.21721 4.01517 4.11325 4.15538 4.27620 4.68350 5.05583 5.17325 5.24791 5.33164 5.50455 5.67471 5.76127 5.78344 5.86598 5.94583 6.03981 6.25753 6.35912 6.45852 6.97095 7.08439 7.35617 7.41326 7.73123 7.94936 8.47909 8.80653 8.97803 9.63135 10.40817 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.054100 B = 0.007111 C = 0.006936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.437708 B = 3936.391765 C = 4035.707062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.015 3.985 3 C 0.144 3.856 4 N -0.507 5.507 5 C 0.135 3.865 6 C -0.417 4.417 7 H 0.078 0.922 8 C 0.058 3.942 9 N -0.836 5.836 10 Si 0.930 3.070 11 H -0.263 1.263 12 H -0.276 1.276 13 H -0.276 1.276 14 C -0.194 4.194 15 O -0.228 6.228 16 C -0.152 4.152 17 C 0.046 3.954 18 O -0.374 6.374 19 C 0.060 3.940 20 H 0.061 0.939 21 H 0.060 0.940 22 H 0.071 0.929 23 H 0.277 0.723 24 H 0.230 0.770 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.057 0.943 28 H 0.089 0.911 29 H 0.103 0.897 30 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.404 -9.602 1.816 10.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.013 3.987 3 C -0.062 4.062 4 N -0.244 5.244 5 C 0.020 3.980 6 C -0.451 4.451 7 H 0.097 0.903 8 C -0.153 4.153 9 N -0.468 5.468 10 Si 0.755 3.245 11 H -0.187 1.187 12 H -0.202 1.202 13 H -0.201 1.201 14 C -0.264 4.264 15 O -0.116 6.116 16 C -0.190 4.190 17 C -0.031 4.031 18 O -0.292 6.292 19 C -0.017 4.017 20 H 0.080 0.920 21 H 0.079 0.921 22 H 0.090 0.910 23 H 0.088 0.912 24 H 0.245 0.755 25 H 0.107 0.893 26 H 0.100 0.900 27 H 0.076 0.924 28 H 0.108 0.892 29 H 0.121 0.879 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.404 -9.640 1.345 10.311 hybrid contribution 0.328 1.163 0.393 1.271 sum -3.077 -8.477 1.738 9.184 Atomic orbital electron populations 1.21774 0.91906 1.01506 1.03537 1.19987 0.95988 0.86591 0.96087 1.24749 0.98106 0.96196 0.87125 1.70621 1.24876 1.01754 1.27126 1.19369 0.94516 0.91183 0.92956 1.18544 1.27926 0.92831 1.05785 0.90337 1.25666 0.93921 1.00626 0.95055 1.69295 1.27630 1.31289 1.18627 0.85896 0.78509 0.80098 0.79967 1.18718 1.20157 1.20128 1.26648 1.14610 0.81824 1.03288 1.84053 1.55281 1.27283 1.44938 1.23117 1.00798 0.97357 0.97760 1.23386 0.99349 0.95762 0.84560 1.89144 1.35693 1.73523 1.30846 1.23588 0.87603 0.94340 0.96185 0.91975 0.92070 0.91042 0.91163 0.75475 0.89284 0.89991 0.92431 0.89234 0.87890 0.91547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.92 8.26 37.16 0.31 -1.61 16 2 C 0.02 0.27 1.02 -154.09 -0.16 0.11 16 3 C 0.14 3.44 6.45 -13.09 -0.08 3.35 16 4 N -0.51 -13.66 11.22 -8.64 -0.10 -13.76 16 5 C 0.14 3.96 6.89 -84.54 -0.58 3.38 16 6 C -0.42 -12.00 9.49 -37.88 -0.36 -12.36 16 7 H 0.08 2.22 7.84 -52.49 -0.41 1.80 16 8 C 0.06 1.55 5.49 -17.35 -0.10 1.46 16 9 N -0.84 -22.41 10.34 55.54 0.57 -21.84 16 10 Si 0.93 19.99 29.56 -169.99 -5.02 14.97 16 11 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 12 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 13 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 14 C -0.19 -5.47 11.18 30.94 0.35 -5.13 16 15 O -0.23 -5.90 9.37 6.02 0.06 -5.85 16 16 C -0.15 -2.27 6.37 -25.16 -0.16 -2.43 16 17 C 0.05 0.63 7.63 37.93 0.29 0.92 16 18 O -0.37 -6.54 11.65 -35.23 -0.41 -6.95 16 19 C 0.06 1.00 6.73 37.93 0.26 1.26 16 20 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 21 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 22 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 23 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 24 H 0.23 6.44 5.78 -52.48 -0.30 6.13 16 25 H 0.09 1.51 6.73 -51.93 -0.35 1.16 16 26 H 0.08 0.97 7.73 -51.93 -0.40 0.57 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.10 1.95 7.75 -51.93 -0.40 1.55 16 30 H 0.07 0.89 7.87 -51.93 -0.41 0.48 16 LS Contribution 255.69 15.07 3.85 3.85 Total: -1.00 -31.36 255.69 -4.81 -36.18 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -3.52 Total: 4.45 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -0.24 Total: -11.06 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: 0.48 Total: -35.60 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: -0.35 Total: -12.80 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -31.36 -4.81 -36.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260085953.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.188 kcal (2) G-P(sol) polarization free energy of solvation -31.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds