Wall clock time and date at job start Mon Mar 30 2020 02:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.76199 * 102.99866 * 2 1 4 4 N 1.32493 * 119.71354 * 0.24760 * 3 2 1 5 5 C 1.31931 * 121.61129 * 180.29054 * 4 3 2 6 6 C 1.38067 * 120.86522 * 359.74679 * 5 4 3 7 7 C 1.38870 * 119.33781 * 359.97438 * 6 5 4 8 8 C 1.38312 * 118.51065 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.45347 * 180.02562 * 8 7 6 10 10 H 1.09002 * 109.47187 * 179.97438 * 9 8 7 11 11 C 1.53005 * 109.46914 * 59.99793 * 9 8 7 12 12 C 1.50699 * 109.47174 * 300.00051 * 9 8 7 13 13 H 1.08005 * 119.99962 * 5.36766 * 12 9 8 14 14 C 1.37874 * 120.00215 * 185.37043 * 12 9 8 15 15 N 1.31510 * 120.00193 * 185.16460 * 14 12 9 16 16 Si 1.86806 * 119.99842 * 5.16722 * 14 12 9 17 17 H 1.48496 * 109.47146 * 269.99959 * 16 14 12 18 18 H 1.48496 * 109.47045 * 30.00004 * 16 14 12 19 19 H 1.48502 * 109.46641 * 149.99683 * 16 14 12 20 20 H 1.09004 * 109.47588 * 180.02562 * 1 2 3 21 21 H 1.09007 * 109.47331 * 299.99996 * 1 2 3 22 22 H 1.09003 * 109.47457 * 59.99954 * 1 2 3 23 23 H 1.08002 * 119.56675 * 179.72428 * 5 4 3 24 24 H 1.07995 * 120.33444 * 179.97438 * 6 5 4 25 25 H 1.07993 * 120.74304 * 180.02562 * 7 6 5 26 26 H 1.08994 * 109.47416 * 54.95639 * 11 9 8 27 27 H 1.08996 * 109.47058 * 174.95626 * 11 9 8 28 28 H 1.09000 * 109.46997 * 294.95294 * 11 9 8 29 29 H 0.97004 * 119.99736 * 355.00028 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 7 1.2368 2.6156 0.0050 5 6 1.4908 3.9102 -0.0005 6 6 2.7901 4.3771 -0.0065 7 6 3.8398 3.4679 -0.0062 8 6 3.5432 2.1170 -0.0004 9 6 4.6482 1.0923 0.0008 10 1 4.2159 0.0917 0.0061 11 6 5.5156 1.2792 1.2473 12 6 5.4966 1.2670 -1.2323 13 1 5.3133 2.0951 -1.9010 14 6 6.5067 0.3697 -1.5070 15 7 7.3118 0.5775 -2.5259 16 14 6.7316 -1.1413 -0.4319 17 1 7.6573 -0.8213 0.6843 18 1 5.4168 -1.5569 0.1191 19 1 7.2996 -2.2469 -1.2445 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 0.6716 4.6140 -0.0007 24 1 2.9882 5.4387 -0.0114 25 1 4.8648 3.8080 -0.0104 26 1 4.8866 1.2419 2.1367 27 1 6.2595 0.4839 1.2949 28 1 6.0188 2.2448 1.1983 29 1 7.1512 1.3217 -3.1270 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260087992.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:22 Heat of formation + Delta-G solvation = 19.308952 kcal Electronic energy + Delta-G solvation = -13079.580537 eV Core-core repulsion = 10900.391362 eV Total energy + Delta-G solvation = -2179.189174 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 223.073 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.59771 -35.05545 -32.08260 -31.47222 -29.18784 -28.55955 -24.81534 -23.43810 -23.09872 -19.76108 -17.58177 -17.44593 -15.97976 -15.25532 -14.56695 -14.03538 -13.78335 -13.39145 -13.08269 -12.95867 -12.69812 -12.22350 -11.97994 -11.88603 -11.34230 -10.93433 -10.56829 -10.24183 -9.77394 -9.59568 -9.49715 -9.10741 -8.98967 -8.61873 -8.43107 -7.05741 -6.43852 -4.12641 1.50082 1.81888 1.94455 2.72272 3.37008 3.46636 3.60303 4.20712 4.47209 4.96801 5.26739 5.34316 5.41884 5.43877 5.54020 5.60285 5.79024 5.99098 6.06154 6.35141 6.51666 6.56586 6.65694 6.73924 7.00950 7.15513 7.41823 7.97466 8.18116 8.33344 8.84053 9.56821 10.93804 Molecular weight = 223.07amu Principal moments of inertia in cm(-1) A = 0.027997 B = 0.011277 C = 0.009102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.857247 B = 2482.280919 C = 3075.499248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 S -0.062 6.062 3 C 0.101 3.899 4 N -0.495 5.495 5 C 0.081 3.919 6 C -0.180 4.180 7 C -0.059 4.059 8 C -0.049 4.049 9 C 0.041 3.959 10 H 0.048 0.952 11 C -0.141 4.141 12 C -0.583 4.583 13 H 0.058 0.942 14 C 0.032 3.968 15 N -0.910 5.910 16 Si 1.049 2.951 17 H -0.283 1.283 18 H -0.273 1.273 19 H -0.289 1.289 20 H 0.095 0.905 21 H 0.079 0.921 22 H 0.080 0.920 23 H 0.148 0.852 24 H 0.127 0.873 25 H 0.138 0.862 26 H 0.029 0.971 27 H 0.048 0.952 28 H 0.051 0.949 29 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.302 2.582 6.787 12.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 S 0.176 5.824 3 C -0.147 4.147 4 N -0.208 5.208 5 C -0.079 4.079 6 C -0.203 4.203 7 C -0.087 4.087 8 C -0.057 4.057 9 C 0.021 3.979 10 H 0.066 0.934 11 C -0.199 4.199 12 C -0.621 4.621 13 H 0.076 0.924 14 C -0.173 4.173 15 N -0.545 5.545 16 Si 0.879 3.121 17 H -0.210 1.210 18 H -0.199 1.199 19 H -0.216 1.216 20 H 0.114 0.886 21 H 0.098 0.902 22 H 0.099 0.901 23 H 0.165 0.835 24 H 0.145 0.855 25 H 0.155 0.845 26 H 0.048 0.952 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.590 -0.078 7.024 11.887 hybrid contribution -0.953 3.012 -0.405 3.185 sum -10.543 2.934 6.619 12.790 Atomic orbital electron populations 1.23475 0.96802 1.05187 1.05843 1.85856 1.04556 1.00007 1.91971 1.22874 0.91927 0.97711 1.02144 1.67859 1.35141 1.02699 1.15059 1.22379 0.95784 0.91497 0.98265 1.22017 0.93957 1.00479 1.03819 1.21437 0.99798 0.92224 0.95228 1.20926 0.93730 0.96238 0.94785 1.18392 0.90758 0.92881 0.95856 0.93402 1.22110 0.99335 1.01461 0.96992 1.21959 1.18136 1.14221 1.07806 0.92416 1.25758 0.92108 1.00901 0.98524 1.70824 1.35948 1.32247 1.15461 0.83935 0.76737 0.76120 0.75357 1.21000 1.19884 1.21571 0.88609 0.90231 0.90116 0.83493 0.85489 0.84459 0.95208 0.93372 0.92966 0.92281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 10.02 101.05 1.01 -1.00 15 2 S -0.06 -1.16 20.49 -107.50 -2.20 -3.37 15 3 C 0.10 2.07 7.00 -16.92 -0.12 1.95 15 4 N -0.50 -9.24 9.43 -12.11 -0.11 -9.35 15 5 C 0.08 1.31 11.17 -17.57 -0.20 1.11 15 6 C -0.18 -2.90 10.11 -39.41 -0.40 -3.29 15 7 C -0.06 -1.14 8.87 -39.32 -0.35 -1.49 15 8 C -0.05 -1.07 4.77 -104.25 -0.50 -1.56 15 9 C 0.04 0.97 1.94 -92.92 -0.18 0.79 15 10 H 0.05 1.17 4.55 -51.91 -0.24 0.94 15 11 C -0.14 -3.04 8.53 37.16 0.32 -2.72 15 12 C -0.58 -16.10 8.64 -34.44 -0.30 -16.40 15 13 H 0.06 1.72 7.77 -52.48 -0.41 1.31 15 14 C 0.03 0.90 5.43 -17.82 -0.10 0.80 15 15 N -0.91 -27.77 13.70 55.43 0.76 -27.02 15 16 Si 1.05 25.37 25.29 -169.99 -4.30 21.07 15 17 H -0.28 -6.46 6.81 56.52 0.38 -6.07 15 18 H -0.27 -6.20 6.36 56.52 0.36 -5.84 15 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 15 20 H 0.10 1.08 8.14 -51.92 -0.42 0.66 15 21 H 0.08 1.07 8.14 -51.92 -0.42 0.65 15 22 H 0.08 1.14 8.14 -51.92 -0.42 0.71 15 23 H 0.15 1.82 8.06 -52.49 -0.42 1.40 15 24 H 0.13 1.60 8.06 -52.49 -0.42 1.17 15 25 H 0.14 2.60 7.72 -52.49 -0.41 2.19 15 26 H 0.03 0.56 8.14 -51.93 -0.42 0.14 15 27 H 0.05 1.04 4.40 -51.93 -0.23 0.81 15 28 H 0.05 1.08 7.64 -51.93 -0.40 0.68 15 29 H 0.27 8.12 8.72 -40.82 -0.36 7.77 15 LS Contribution 255.15 15.07 3.84 3.84 Total: -1.00 -30.47 255.15 -6.24 -36.71 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: -3.42 Total: -0.08 kcal Atomic # 6 Polarization: -21.01 SS G_CDS: -0.80 Total: -21.81 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: 0.64 Total: -36.37 kcal Atomic # 14 Polarization: 25.37 SS G_CDS: -4.30 Total: 21.07 kcal Atomic # 16 Polarization: -1.16 SS G_CDS: -2.20 Total: -3.37 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -30.47 -6.24 -36.71 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260087992.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.019 kcal (2) G-P(sol) polarization free energy of solvation -30.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds