Wall clock time and date at job start Mon Mar 30 2020 02:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.76199 * 102.99866 * 2 1 4 4 N 1.32493 * 119.71354 * 0.24760 * 3 2 1 5 5 C 1.31931 * 121.61129 * 180.29054 * 4 3 2 6 6 C 1.38067 * 120.86522 * 359.74679 * 5 4 3 7 7 C 1.38870 * 119.33781 * 359.97438 * 6 5 4 8 8 C 1.38312 * 118.51065 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.45347 * 180.02562 * 8 7 6 10 10 H 1.09002 * 109.47187 * 179.97438 * 9 8 7 11 11 C 1.53005 * 109.46914 * 59.99793 * 9 8 7 12 12 C 1.50699 * 109.47174 * 300.00051 * 9 8 7 13 13 H 1.08005 * 119.99962 * 5.36766 * 12 9 8 14 14 C 1.37874 * 120.00215 * 185.37043 * 12 9 8 15 15 N 1.31510 * 120.00193 * 185.16460 * 14 12 9 16 16 Si 1.86806 * 119.99842 * 5.16722 * 14 12 9 17 17 H 1.48496 * 109.47146 * 269.99959 * 16 14 12 18 18 H 1.48496 * 109.47045 * 30.00004 * 16 14 12 19 19 H 1.48502 * 109.46641 * 149.99683 * 16 14 12 20 20 H 1.09004 * 109.47588 * 180.02562 * 1 2 3 21 21 H 1.09007 * 109.47331 * 299.99996 * 1 2 3 22 22 H 1.09003 * 109.47457 * 59.99954 * 1 2 3 23 23 H 1.08002 * 119.56675 * 179.72428 * 5 4 3 24 24 H 1.07995 * 120.33444 * 179.97438 * 6 5 4 25 25 H 1.07993 * 120.74304 * 180.02562 * 7 6 5 26 26 H 1.08994 * 109.47416 * 54.95639 * 11 9 8 27 27 H 1.08996 * 109.47058 * 174.95626 * 11 9 8 28 28 H 1.09000 * 109.46997 * 294.95294 * 11 9 8 29 29 H 0.97004 * 119.99736 * 355.00028 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 7 1.2368 2.6156 0.0050 5 6 1.4908 3.9102 -0.0005 6 6 2.7901 4.3771 -0.0065 7 6 3.8398 3.4679 -0.0062 8 6 3.5432 2.1170 -0.0004 9 6 4.6482 1.0923 0.0008 10 1 4.2159 0.0917 0.0061 11 6 5.5156 1.2792 1.2473 12 6 5.4966 1.2670 -1.2323 13 1 5.3133 2.0951 -1.9010 14 6 6.5067 0.3697 -1.5070 15 7 7.3118 0.5775 -2.5259 16 14 6.7316 -1.1413 -0.4319 17 1 7.6573 -0.8213 0.6843 18 1 5.4168 -1.5569 0.1191 19 1 7.2996 -2.2469 -1.2445 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 0.6716 4.6140 -0.0007 24 1 2.9882 5.4387 -0.0114 25 1 4.8648 3.8080 -0.0104 26 1 4.8866 1.2419 2.1367 27 1 6.2595 0.4839 1.2949 28 1 6.0188 2.2448 1.1983 29 1 7.1512 1.3217 -3.1270 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260087992.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:21 Heat of formation + Delta-G solvation = -0.131635 kcal Electronic energy + Delta-G solvation = -13080.423544 eV Core-core repulsion = 10900.391362 eV Total energy + Delta-G solvation = -2180.032181 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 223.073 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.02792 -36.84187 -34.04905 -32.93916 -30.78108 -29.69804 -26.78268 -24.97452 -24.59274 -21.54452 -19.57848 -18.90906 -17.50949 -16.69098 -16.15319 -15.58129 -15.30689 -14.88960 -14.55775 -14.42732 -14.21500 -13.97623 -13.51455 -13.24357 -13.19106 -12.58072 -12.36698 -11.85692 -11.61461 -11.16801 -10.91475 -10.85259 -10.71479 -10.41456 -10.33213 -8.75198 -8.42586 -6.38540 0.08936 0.37190 0.58040 1.42742 1.46346 1.54644 1.71308 2.47132 2.79229 3.11068 3.65846 3.97957 4.11123 4.20418 4.35259 4.37523 4.42132 4.51733 4.69338 4.83033 4.90617 5.01452 5.10278 5.14050 5.38760 5.63216 5.75175 5.96849 6.03451 6.54738 6.79350 7.38866 8.66638 Molecular weight = 223.07amu Principal moments of inertia in cm(-1) A = 0.027997 B = 0.011277 C = 0.009102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.857247 B = 2482.280919 C = 3075.499248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.111 6.111 3 C 0.089 3.911 4 N -0.501 5.501 5 C 0.087 3.913 6 C -0.168 4.168 7 C -0.074 4.074 8 C -0.086 4.086 9 C 0.042 3.958 10 H 0.044 0.956 11 C -0.138 4.138 12 C -0.576 4.576 13 H 0.020 0.980 14 C -0.019 4.019 15 N -0.945 5.945 16 Si 1.082 2.918 17 H -0.259 1.259 18 H -0.251 1.251 19 H -0.292 1.292 20 H 0.125 0.875 21 H 0.086 0.914 22 H 0.079 0.921 23 H 0.193 0.807 24 H 0.168 0.832 25 H 0.130 0.870 26 H 0.054 0.946 27 H 0.045 0.955 28 H 0.051 0.949 29 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.332 3.083 8.453 15.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 S 0.127 5.873 3 C -0.158 4.158 4 N -0.214 5.214 5 C -0.074 4.074 6 C -0.190 4.190 7 C -0.102 4.102 8 C -0.094 4.094 9 C 0.022 3.978 10 H 0.061 0.939 11 C -0.195 4.195 12 C -0.614 4.614 13 H 0.038 0.962 14 C -0.216 4.216 15 N -0.582 5.582 16 Si 0.904 3.096 17 H -0.184 1.184 18 H -0.175 1.175 19 H -0.219 1.219 20 H 0.143 0.857 21 H 0.105 0.895 22 H 0.098 0.902 23 H 0.210 0.790 24 H 0.186 0.814 25 H 0.148 0.852 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -11.632 0.442 8.704 14.535 hybrid contribution -0.484 3.017 -0.961 3.203 sum -12.116 3.458 7.743 14.789 Atomic orbital electron populations 1.23505 0.92336 1.07205 1.06112 1.85868 1.09364 1.00003 1.92025 1.22915 0.91764 0.98591 1.02534 1.67942 1.34531 1.03613 1.15312 1.23198 0.97213 0.91296 0.95643 1.22410 0.93004 1.01974 1.01612 1.21566 1.00647 0.92230 0.95753 1.20829 0.93871 0.96688 0.97994 1.18242 0.91230 0.93709 0.94644 0.93864 1.22010 0.99241 1.01310 0.96939 1.22115 1.18371 1.12348 1.08567 0.96211 1.27083 0.92034 1.03521 0.98997 1.70948 1.37750 1.32545 1.16951 0.83565 0.78328 0.72939 0.74767 1.18429 1.17546 1.21912 0.85690 0.89465 0.90176 0.79000 0.81437 0.85213 0.92730 0.93637 0.93013 0.93972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.12 10.02 113.37 1.14 -1.99 15 2 S -0.11 -4.01 20.49 -56.49 -1.16 -5.17 15 3 C 0.09 3.54 7.00 84.81 0.59 4.13 15 4 N -0.50 -17.44 9.43 -192.22 -1.81 -19.25 15 5 C 0.09 2.47 11.17 84.64 0.95 3.42 15 6 C -0.17 -4.88 10.11 22.38 0.23 -4.65 15 7 C -0.07 -2.81 8.87 22.44 0.20 -2.62 15 8 C -0.09 -3.70 4.77 -19.63 -0.09 -3.79 15 9 C 0.04 1.97 1.94 -12.28 -0.02 1.95 15 10 H 0.04 2.11 4.55 -2.40 -0.01 2.10 15 11 C -0.14 -5.78 8.53 71.98 0.61 -5.16 15 12 C -0.58 -32.75 8.64 25.60 0.22 -32.53 15 13 H 0.02 1.23 7.77 -2.91 -0.02 1.21 15 14 C -0.02 -1.12 5.43 84.65 0.46 -0.66 15 15 N -0.95 -59.74 13.70 21.45 0.29 -59.45 15 16 Si 1.08 50.97 25.29 68.60 1.73 52.71 15 17 H -0.26 -11.14 6.81 99.48 0.68 -10.46 15 18 H -0.25 -10.86 6.36 99.48 0.63 -10.23 15 19 H -0.29 -13.84 7.11 99.48 0.71 -13.13 15 20 H 0.12 2.42 8.14 -2.39 -0.02 2.40 15 21 H 0.09 2.09 8.14 -2.39 -0.02 2.07 15 22 H 0.08 2.06 8.14 -2.39 -0.02 2.04 15 23 H 0.19 3.68 8.06 -2.91 -0.02 3.66 15 24 H 0.17 3.45 8.06 -2.91 -0.02 3.43 15 25 H 0.13 4.96 7.72 -2.91 -0.02 4.93 15 26 H 0.05 1.99 8.14 -2.39 -0.02 1.97 15 27 H 0.04 1.90 4.40 -2.39 -0.01 1.89 15 28 H 0.05 2.12 7.64 -2.39 -0.02 2.10 15 29 H 0.25 16.11 8.72 -92.71 -0.81 15.30 15 Total: -1.00 -68.13 255.15 4.34 -63.79 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: 1.00 Total: 9.27 kcal Atomic # 6 Polarization: -46.19 SS G_CDS: 4.28 Total: -41.91 kcal Atomic # 7 Polarization: -77.18 SS G_CDS: -1.52 Total: -78.70 kcal Atomic # 14 Polarization: 50.97 SS G_CDS: 1.73 Total: 52.71 kcal Atomic # 16 Polarization: -4.01 SS G_CDS: -1.16 Total: -5.17 kcal Total: -68.13 4.34 -63.79 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260087992.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.658 kcal (2) G-P(sol) polarization free energy of solvation -68.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds