Wall clock time and date at job start Mon Mar 30 2020 03:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30634 * 1 3 3 Si 1.86803 * 119.99715 * 2 1 4 4 H 1.48496 * 109.47075 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47069 * 299.99359 * 3 2 1 6 6 H 1.48496 * 109.47556 * 59.99654 * 3 2 1 7 7 C 1.40330 * 120.00103 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00125 * 180.02562 * 7 2 1 9 9 C 1.39804 * 120.00068 * 0.02562 * 7 2 1 10 10 N 1.32817 * 125.79910 * 179.97438 * 9 7 2 11 11 C 1.33059 * 108.64803 * 179.97438 * 10 9 7 12 12 C 1.50703 * 126.00771 * 179.97438 * 11 10 9 13 13 H 1.08996 * 109.48068 * 185.04237 * 12 11 10 14 14 C 1.53090 * 109.48105 * 305.08180 * 12 11 10 15 15 C 1.53181 * 109.16481 * 177.59465 * 14 12 11 16 16 C 1.53186 * 109.02951 * 303.01710 * 15 14 12 17 17 C 1.53087 * 109.16665 * 56.98173 * 16 15 14 18 18 O 1.42905 * 109.41504 * 302.39123 * 17 16 15 19 19 C 1.35940 * 107.98260 * 0.22348 * 11 10 9 20 20 O 1.34600 * 107.35616 * 359.63581 * 19 11 10 21 21 H 0.96999 * 119.99887 * 0.02562 * 1 2 3 22 22 H 1.09007 * 109.51738 * 297.49541 * 14 12 11 23 23 H 1.08997 * 109.52670 * 57.62017 * 14 12 11 24 24 H 1.08997 * 109.54268 * 62.87505 * 15 14 12 25 25 H 1.08993 * 109.54386 * 183.06408 * 15 14 12 26 26 H 1.09001 * 109.51857 * 176.88572 * 16 15 14 27 27 H 1.08995 * 109.52201 * 297.01063 * 16 15 14 28 28 H 1.08994 * 109.48330 * 182.40659 * 17 16 15 29 29 H 1.09001 * 109.48123 * 62.37055 * 17 16 15 30 30 H 1.07999 * 126.31856 * 179.77680 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.7002 1.3465 0.0006 5 1 1.8816 2.3964 -1.2126 6 1 1.8815 2.3966 1.2124 7 6 2.0080 -1.2153 0.0005 8 1 3.0881 -1.2153 0.0010 9 6 1.3090 -2.4260 0.0005 10 7 1.8535 -3.6375 0.0005 11 6 0.8780 -4.5424 0.0011 12 6 1.0576 -6.0387 0.0008 13 1 0.0845 -6.5215 -0.0889 14 6 1.9412 -6.4466 -1.1810 15 6 2.1683 -7.9609 -1.1399 16 6 2.7911 -8.3361 0.2084 17 6 1.8748 -7.8553 1.3365 18 8 1.6801 -6.4442 1.2215 19 6 -0.3090 -3.8799 -0.0036 20 8 -0.0335 -2.5624 0.0012 21 1 -0.4850 0.8400 -0.0004 22 1 1.4474 -6.1776 -2.1148 23 1 2.8995 -5.9316 -1.1142 24 1 1.2149 -8.4759 -1.2570 25 1 2.8410 -8.2507 -1.9470 26 1 2.9053 -9.4185 0.2682 27 1 3.7675 -7.8611 0.3035 28 1 2.3335 -8.0816 2.2990 29 1 0.9125 -8.3620 1.2642 30 1 -1.2916 -4.3280 -0.0078 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260102837.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:11 Heat of formation + Delta-G solvation = -51.688659 kcal Electronic energy + Delta-G solvation = -15133.923296 eV Core-core repulsion = 12508.902564 eV Total energy + Delta-G solvation = -2625.020733 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.98789 -38.78974 -33.75627 -33.27572 -33.07440 -30.81965 -28.73986 -25.95809 -24.32328 -23.18365 -20.80706 -20.05590 -19.33597 -17.47320 -15.73250 -15.69692 -15.34396 -14.63410 -14.42742 -14.21979 -14.11260 -13.43515 -12.99932 -12.65547 -12.32235 -11.53647 -11.42135 -11.34986 -11.02636 -10.84557 -10.70874 -10.45466 -10.30897 -10.04197 -9.59325 -9.32982 -8.98262 -8.47848 -7.43802 -6.89067 -4.64641 2.87494 3.04781 3.12424 3.24872 3.86612 3.96251 4.54062 4.91268 5.02079 5.06447 5.14056 5.28659 5.44689 5.49039 5.62599 5.73537 5.81468 5.93943 6.07185 6.16161 6.25516 6.40322 6.62450 6.72284 6.98366 7.06324 7.62620 7.74770 7.94540 8.22892 8.55972 8.71414 9.88007 10.14132 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.057852 B = 0.006445 C = 0.006220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.880303 B = 4343.742505 C = 4500.678527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.070 3.930 3 Si 0.931 3.069 4 H -0.257 1.257 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.430 4.430 8 H 0.110 0.890 9 C 0.345 3.655 10 N -0.594 5.594 11 C 0.015 3.985 12 C 0.185 3.815 13 H 0.056 0.944 14 C -0.140 4.140 15 C -0.121 4.121 16 C -0.155 4.155 17 C 0.059 3.941 18 O -0.367 6.367 19 C -0.200 4.200 20 O -0.184 6.184 21 H 0.285 0.715 22 H 0.068 0.932 23 H 0.081 0.919 24 H 0.058 0.942 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.043 0.957 30 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.035 -9.344 -0.971 9.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.152 4.152 3 Si 0.754 3.246 4 H -0.180 1.180 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.465 4.465 8 H 0.128 0.872 9 C 0.160 3.840 10 N -0.327 5.327 11 C -0.111 4.111 12 C 0.127 3.873 13 H 0.074 0.926 14 C -0.178 4.178 15 C -0.159 4.159 16 C -0.193 4.193 17 C -0.018 4.018 18 O -0.285 6.285 19 C -0.275 4.275 20 O -0.075 6.075 21 H 0.096 0.904 22 H 0.087 0.913 23 H 0.100 0.900 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.106 0.894 29 H 0.062 0.938 30 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 1.554 -9.169 -0.829 9.337 hybrid contribution -0.701 0.497 -0.202 0.883 sum 0.853 -8.672 -1.031 8.775 Atomic orbital electron populations 1.69722 1.07620 1.29830 1.33445 1.26112 0.95035 1.01976 0.92097 0.85879 0.80645 0.79431 0.78616 1.17998 1.19626 1.19608 1.18417 0.94804 0.85753 1.47536 0.87205 1.22152 0.76665 0.93487 0.91734 1.70769 1.31199 0.97754 1.32978 1.20821 0.90509 0.93876 1.05854 1.19989 0.93830 0.89327 0.84184 0.92629 1.22080 1.02308 0.94829 0.98573 1.21618 1.00539 0.96632 0.97101 1.22183 1.00556 1.00654 0.95913 1.22502 0.97796 0.83005 0.98482 1.88115 1.81196 1.20996 1.38214 1.24056 0.98650 0.82782 1.22038 1.84853 1.26812 1.23333 1.72500 0.90422 0.91342 0.90004 0.92289 0.91809 0.91551 0.90994 0.89399 0.93833 0.80929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.90 11.98 55.57 0.67 -20.23 16 2 C 0.07 1.80 5.50 -17.27 -0.10 1.70 16 3 Si 0.93 18.76 29.56 -169.99 -5.03 13.73 16 4 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 5 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 6 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 7 C -0.43 -12.05 9.45 -38.21 -0.36 -12.41 16 8 H 0.11 2.95 7.85 -52.48 -0.41 2.54 16 9 C 0.34 10.21 7.66 -16.54 -0.13 10.09 16 10 N -0.59 -16.93 11.32 -9.64 -0.11 -17.04 16 11 C 0.01 0.37 6.00 -82.88 -0.50 -0.13 16 12 C 0.18 3.71 3.14 -27.84 -0.09 3.62 16 13 H 0.06 0.99 8.11 -51.93 -0.42 0.56 16 14 C -0.14 -2.47 5.38 -26.59 -0.14 -2.61 16 15 C -0.12 -1.63 6.03 -26.54 -0.16 -1.79 16 16 C -0.16 -2.00 6.14 -26.59 -0.16 -2.16 16 17 C 0.06 0.86 6.84 37.20 0.25 1.11 16 18 O -0.37 -7.44 10.39 -35.23 -0.37 -7.81 16 19 C -0.20 -5.07 12.11 29.91 0.36 -4.71 16 20 O -0.18 -5.36 9.06 3.10 0.03 -5.33 16 21 H 0.28 6.80 8.29 -40.82 -0.34 6.46 16 22 H 0.07 1.17 8.14 -51.92 -0.42 0.75 16 23 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.17 3.61 8.06 -52.49 -0.42 3.18 16 LS Contribution 259.33 15.07 3.91 3.91 Total: -1.00 -31.88 259.33 -5.69 -37.57 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -3.77 Total: 2.50 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -1.02 Total: -7.29 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: 0.56 Total: -37.27 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: -0.34 Total: -13.14 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -31.88 -5.69 -37.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260102837.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.122 kcal (2) G-P(sol) polarization free energy of solvation -31.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds