Wall clock time and date at job start Mon Mar 30 2020 03:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50702 * 109.98852 * 2 1 4 4 N 1.30804 * 125.15556 * 61.10498 * 3 2 1 5 5 C 1.33321 * 109.25978 * 180.02562 * 4 3 2 6 6 C 1.39427 * 107.07787 * 0.02562 * 5 4 3 7 7 C 1.39846 * 126.87113 * 179.97438 * 6 5 4 8 8 H 1.08006 * 119.99666 * 353.78874 * 7 6 5 9 9 C 1.40164 * 120.00258 * 173.78701 * 7 6 5 10 10 N 1.30799 * 120.00289 * 169.45725 * 9 7 6 11 11 Si 1.86807 * 119.99845 * 349.45549 * 9 7 6 12 12 H 1.48496 * 109.46848 * 84.68618 * 11 9 7 13 13 H 1.48493 * 109.46983 * 204.68549 * 11 9 7 14 14 H 1.48496 * 109.46827 * 324.68539 * 11 9 7 15 15 O 1.34018 * 125.15632 * 240.80901 * 3 2 1 16 16 C 1.54103 * 109.88051 * 121.08086 * 2 1 3 17 17 C 1.54810 * 104.18344 * 117.39965 * 16 2 1 18 18 C 1.55001 * 102.09546 * 339.11826 * 17 16 2 19 19 O 1.43739 * 109.88283 * 238.91828 * 2 1 3 20 20 H 1.08998 * 109.47428 * 298.91523 * 1 2 3 21 21 H 1.08997 * 109.47453 * 58.91798 * 1 2 3 22 22 H 1.09000 * 109.46865 * 178.91316 * 1 2 3 23 23 H 1.07995 * 126.46471 * 180.02562 * 5 4 3 24 24 H 0.97004 * 120.00235 * 180.02562 * 10 9 7 25 25 H 1.08997 * 110.48828 * 236.07393 * 16 2 1 26 26 H 1.09000 * 110.48383 * 358.72775 * 16 2 1 27 27 H 1.08996 * 110.91183 * 97.32077 * 17 16 2 28 28 H 1.09006 * 110.90829 * 220.92417 * 17 16 2 29 29 H 1.08996 * 110.61693 * 278.52710 * 18 17 16 30 30 H 1.08994 * 110.61831 * 155.52740 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0451 1.4162 0.0000 4 7 1.8169 2.3007 0.9363 5 6 2.4206 3.4455 0.6163 6 6 3.0626 3.2426 -0.6046 7 6 3.8203 4.1756 -1.3195 8 1 3.8721 5.2007 -0.9831 9 6 4.5124 3.7806 -2.4725 10 7 5.0487 4.6817 -3.2544 11 14 4.6690 1.9672 -2.8926 12 1 3.4593 1.5240 -3.6312 13 1 5.8706 1.7572 -3.7394 14 1 4.8014 1.1789 -1.6411 15 8 2.8111 1.9588 -0.9566 16 6 2.0540 -0.7481 1.2411 17 6 2.8325 -1.9523 0.6576 18 6 2.2281 -2.0713 -0.7648 19 8 2.0188 -0.6978 -1.1576 20 1 -0.3634 0.4969 0.8995 21 1 -0.3634 0.5305 -0.8801 22 1 -0.3633 -1.0275 -0.0195 23 1 2.4136 4.3581 1.1939 24 1 5.5273 4.4083 -4.0526 25 1 2.7196 -0.1077 1.8198 26 1 1.2237 -1.0931 1.8574 27 1 3.9004 -1.7389 0.6099 28 1 2.6433 -2.8557 1.2374 29 1 1.2815 -2.6107 -0.7356 30 1 2.9296 -2.5611 -1.4401 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260108026.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:46 Heat of formation + Delta-G solvation = -46.487697 kcal Electronic energy + Delta-G solvation = -15716.879368 eV Core-core repulsion = 13092.084166 eV Total energy + Delta-G solvation = -2624.795202 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.33756 -39.19880 -33.92217 -33.20171 -32.00092 -31.42177 -29.46124 -26.27239 -24.85968 -21.96488 -21.60922 -20.33705 -19.44487 -17.62246 -16.83119 -15.89169 -15.30890 -14.89226 -14.47780 -13.90660 -13.61854 -13.22907 -12.74971 -12.48732 -12.36836 -11.81814 -11.55809 -11.43624 -11.25244 -11.17371 -10.97352 -10.66152 -10.47627 -9.97271 -9.65475 -9.55684 -9.44091 -9.00253 -7.63581 -7.12972 -4.63509 2.78781 3.05185 3.31206 3.40936 3.95454 3.98953 4.08471 4.38255 4.86629 4.99434 5.02500 5.06311 5.33617 5.48235 5.57749 5.78848 5.84449 5.89671 6.03163 6.06083 6.17254 6.40407 6.53316 6.61498 6.82435 7.01251 7.28398 7.56469 7.96836 8.05793 8.16653 8.51563 9.42921 9.85954 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.033421 B = 0.011416 C = 0.009399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.602496 B = 2452.160530 C = 2978.363268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.224 3.776 3 C 0.030 3.970 4 N -0.434 5.434 5 C -0.221 4.221 6 C 0.147 3.853 7 C -0.413 4.413 8 H 0.117 0.883 9 C 0.083 3.917 10 N -0.792 5.792 11 Si 0.919 3.081 12 H -0.258 1.258 13 H -0.287 1.287 14 H -0.243 1.243 15 O -0.222 6.222 16 C -0.136 4.136 17 C -0.156 4.156 18 C 0.044 3.956 19 O -0.360 6.360 20 H 0.074 0.926 21 H 0.062 0.938 22 H 0.058 0.942 23 H 0.155 0.845 24 H 0.292 0.708 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.060 0.940 30 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.355 -11.722 3.275 12.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.184 3.816 3 C -0.169 4.169 4 N -0.163 5.163 5 C -0.366 4.366 6 C 0.093 3.907 7 C -0.442 4.442 8 H 0.135 0.865 9 C -0.139 4.139 10 N -0.417 5.417 11 Si 0.745 3.255 12 H -0.183 1.183 13 H -0.214 1.214 14 H -0.167 1.167 15 O -0.114 6.114 16 C -0.174 4.174 17 C -0.194 4.194 18 C -0.033 4.033 19 O -0.278 6.278 20 H 0.093 0.907 21 H 0.081 0.919 22 H 0.077 0.923 23 H 0.173 0.827 24 H 0.102 0.898 25 H 0.103 0.897 26 H 0.098 0.902 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.078 0.922 30 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.562 -11.710 3.374 12.696 hybrid contribution 0.575 -0.367 -0.736 1.004 sum -2.987 -12.077 2.638 12.718 Atomic orbital electron populations 1.22181 0.93681 1.01504 1.03476 1.19694 0.92661 0.83990 0.85291 1.24146 1.06409 0.96620 0.89759 1.69229 1.19998 1.00767 1.26278 1.22664 1.15934 0.97826 1.00169 1.20873 0.95223 0.80621 0.93999 1.18601 1.22787 0.96593 1.06187 0.86481 1.26257 0.92015 1.01467 0.94189 1.69584 1.24637 1.36783 1.10653 0.85974 0.78197 0.80847 0.80437 1.18271 1.21438 1.16680 1.84337 1.57337 1.24618 1.45104 1.23018 1.00584 0.96446 0.97381 1.23160 1.01118 0.98477 0.96608 1.23546 0.99535 0.84723 0.95518 1.89007 1.86127 1.20105 1.32605 0.90677 0.91860 0.92309 0.82742 0.89783 0.89681 0.90248 0.90549 0.90329 0.92215 0.89188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 8.60 37.16 0.32 -2.19 16 2 C 0.22 4.41 1.15 -91.20 -0.11 4.30 16 3 C 0.03 0.73 6.40 -12.71 -0.08 0.65 16 4 N -0.43 -10.92 11.23 -10.02 -0.11 -11.04 16 5 C -0.22 -5.75 11.99 -16.46 -0.20 -5.95 16 6 C 0.15 4.04 6.50 -38.54 -0.25 3.78 16 7 C -0.41 -11.43 9.90 -38.26 -0.38 -11.81 16 8 H 0.12 3.24 8.06 -52.48 -0.42 2.82 16 9 C 0.08 2.22 5.52 -17.27 -0.10 2.13 16 10 N -0.79 -20.90 13.93 55.56 0.77 -20.12 16 11 Si 0.92 22.34 25.92 -169.99 -4.41 17.94 16 12 H -0.26 -6.45 7.11 56.52 0.40 -6.04 16 13 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 14 H -0.24 -6.19 6.51 56.52 0.37 -5.82 16 15 O -0.22 -6.07 6.06 -9.90 -0.06 -6.13 16 16 C -0.14 -2.19 6.26 -25.20 -0.16 -2.35 16 17 C -0.16 -2.09 7.15 -24.72 -0.18 -2.27 16 18 C 0.04 0.62 7.66 38.21 0.29 0.91 16 19 O -0.36 -7.22 10.66 -48.24 -0.51 -7.74 16 20 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 21 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 22 H 0.06 0.78 8.11 -51.93 -0.42 0.36 16 23 H 0.16 3.68 8.06 -52.49 -0.42 3.25 16 24 H 0.29 6.94 8.30 -40.82 -0.34 6.60 16 25 H 0.08 1.53 7.69 -51.93 -0.40 1.13 16 26 H 0.08 1.06 7.70 -51.93 -0.40 0.66 16 27 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.70 8.11 -51.93 -0.42 0.28 16 30 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 256.40 15.07 3.86 3.86 Total: -1.00 -30.55 256.40 -5.05 -35.60 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -3.77 Total: 0.40 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: -0.83 Total: -12.78 kcal Atomic # 7 Polarization: -31.82 SS G_CDS: 0.66 Total: -31.16 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -0.57 Total: -13.87 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.41 Total: 17.94 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -30.55 -5.05 -35.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260108026.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.884 kcal (2) G-P(sol) polarization free energy of solvation -30.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds