Wall clock time and date at job start Mon Mar 30 2020 03:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50702 * 109.98852 * 2 1 4 4 N 1.30804 * 125.15556 * 61.10498 * 3 2 1 5 5 C 1.33321 * 109.25978 * 180.02562 * 4 3 2 6 6 C 1.39427 * 107.07787 * 0.02562 * 5 4 3 7 7 C 1.39846 * 126.87113 * 179.97438 * 6 5 4 8 8 H 1.08006 * 119.99666 * 353.78874 * 7 6 5 9 9 C 1.40164 * 120.00258 * 173.78701 * 7 6 5 10 10 N 1.30799 * 120.00289 * 169.45725 * 9 7 6 11 11 Si 1.86807 * 119.99845 * 349.45549 * 9 7 6 12 12 H 1.48496 * 109.46848 * 84.68618 * 11 9 7 13 13 H 1.48493 * 109.46983 * 204.68549 * 11 9 7 14 14 H 1.48496 * 109.46827 * 324.68539 * 11 9 7 15 15 O 1.34018 * 125.15632 * 240.80901 * 3 2 1 16 16 C 1.54103 * 109.88051 * 121.08086 * 2 1 3 17 17 C 1.54810 * 104.18344 * 117.39965 * 16 2 1 18 18 C 1.55001 * 102.09546 * 339.11826 * 17 16 2 19 19 O 1.43739 * 109.88283 * 238.91828 * 2 1 3 20 20 H 1.08998 * 109.47428 * 298.91523 * 1 2 3 21 21 H 1.08997 * 109.47453 * 58.91798 * 1 2 3 22 22 H 1.09000 * 109.46865 * 178.91316 * 1 2 3 23 23 H 1.07995 * 126.46471 * 180.02562 * 5 4 3 24 24 H 0.97004 * 120.00235 * 180.02562 * 10 9 7 25 25 H 1.08997 * 110.48828 * 236.07393 * 16 2 1 26 26 H 1.09000 * 110.48383 * 358.72775 * 16 2 1 27 27 H 1.08996 * 110.91183 * 97.32077 * 17 16 2 28 28 H 1.09006 * 110.90829 * 220.92417 * 17 16 2 29 29 H 1.08996 * 110.61693 * 278.52710 * 18 17 16 30 30 H 1.08994 * 110.61831 * 155.52740 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0451 1.4162 0.0000 4 7 1.8169 2.3007 0.9363 5 6 2.4206 3.4455 0.6163 6 6 3.0626 3.2426 -0.6046 7 6 3.8203 4.1756 -1.3195 8 1 3.8721 5.2007 -0.9831 9 6 4.5124 3.7806 -2.4725 10 7 5.0487 4.6817 -3.2544 11 14 4.6690 1.9672 -2.8926 12 1 3.4593 1.5240 -3.6312 13 1 5.8706 1.7572 -3.7394 14 1 4.8014 1.1789 -1.6411 15 8 2.8111 1.9588 -0.9566 16 6 2.0540 -0.7481 1.2411 17 6 2.8325 -1.9523 0.6576 18 6 2.2281 -2.0713 -0.7648 19 8 2.0188 -0.6978 -1.1576 20 1 -0.3634 0.4969 0.8995 21 1 -0.3634 0.5305 -0.8801 22 1 -0.3633 -1.0275 -0.0195 23 1 2.4136 4.3581 1.1939 24 1 5.5273 4.4083 -4.0526 25 1 2.7196 -0.1077 1.8198 26 1 1.2237 -1.0931 1.8574 27 1 3.9004 -1.7389 0.6099 28 1 2.6433 -2.8557 1.2374 29 1 1.2815 -2.6107 -0.7356 30 1 2.9296 -2.5611 -1.4401 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260108026.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:46 Heat of formation + Delta-G solvation = -68.940880 kcal Electronic energy + Delta-G solvation = -15717.853011 eV Core-core repulsion = 13092.084166 eV Total energy + Delta-G solvation = -2625.768845 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.35401 -40.55005 -35.93996 -35.17932 -33.53012 -32.72510 -31.36105 -27.62461 -26.66227 -23.73782 -22.90358 -22.22444 -21.11251 -19.71697 -18.45747 -17.29989 -17.20512 -16.69528 -16.07085 -15.47389 -15.09654 -14.83658 -14.55715 -14.24477 -13.66813 -13.51508 -13.34014 -13.09941 -12.96802 -12.68895 -12.18805 -12.09330 -11.92894 -11.67234 -11.63929 -11.51672 -11.03258 -10.81078 -9.68268 -9.16835 -6.71378 0.76992 1.11263 1.32769 1.43685 1.99779 2.05551 2.54389 2.69877 2.89602 3.59101 3.69733 3.82853 4.07155 4.24276 4.34850 4.59978 4.64002 4.69201 4.71114 4.80653 4.87848 4.91900 5.05539 5.13050 5.19102 5.25246 5.48750 5.82936 5.91468 6.07892 6.12618 6.43453 7.39424 7.87958 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.033421 B = 0.011416 C = 0.009399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.602496 B = 2452.160530 C = 2978.363268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.209 3.791 3 C 0.039 3.961 4 N -0.444 5.444 5 C -0.234 4.234 6 C 0.122 3.878 7 C -0.440 4.440 8 H 0.104 0.896 9 C 0.057 3.943 10 N -0.810 5.810 11 Si 0.967 3.033 12 H -0.271 1.271 13 H -0.253 1.253 14 H -0.266 1.266 15 O -0.237 6.237 16 C -0.133 4.133 17 C -0.148 4.148 18 C 0.035 3.965 19 O -0.399 6.399 20 H 0.076 0.924 21 H 0.044 0.956 22 H 0.101 0.899 23 H 0.169 0.831 24 H 0.305 0.695 25 H 0.057 0.943 26 H 0.114 0.886 27 H 0.061 0.939 28 H 0.122 0.878 29 H 0.093 0.907 30 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.977 -14.514 3.551 15.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.169 3.831 3 C -0.163 4.163 4 N -0.172 5.172 5 C -0.377 4.377 6 C 0.069 3.931 7 C -0.469 4.469 8 H 0.122 0.878 9 C -0.164 4.164 10 N -0.435 5.435 11 Si 0.792 3.208 12 H -0.196 1.196 13 H -0.179 1.179 14 H -0.191 1.191 15 O -0.130 6.130 16 C -0.172 4.172 17 C -0.185 4.185 18 C -0.041 4.041 19 O -0.318 6.318 20 H 0.095 0.905 21 H 0.063 0.937 22 H 0.119 0.881 23 H 0.186 0.814 24 H 0.117 0.883 25 H 0.076 0.924 26 H 0.132 0.868 27 H 0.079 0.921 28 H 0.140 0.860 29 H 0.111 0.889 30 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.158 -14.466 3.643 15.486 hybrid contribution 0.699 0.425 -0.765 1.120 sum -3.459 -14.041 2.878 14.744 Atomic orbital electron populations 1.22150 0.91321 1.04006 1.02665 1.20225 0.94328 0.81503 0.87068 1.25705 1.03749 0.98649 0.88152 1.69271 1.20656 1.00669 1.26588 1.22983 1.15849 0.98797 1.00033 1.21008 0.96271 0.81027 0.94787 1.18607 1.24479 0.96322 1.07502 0.87827 1.26699 0.91820 1.03899 0.93949 1.69555 1.24933 1.37778 1.11264 0.85311 0.78784 0.77310 0.79385 1.19609 1.17856 1.19111 1.84348 1.57847 1.24633 1.46173 1.23018 1.01580 0.96636 0.95918 1.23175 0.99762 0.98976 0.96619 1.23936 1.01760 0.82299 0.96058 1.88960 1.86468 1.23088 1.33316 0.90499 0.93709 0.88078 0.81371 0.88343 0.92399 0.86780 0.92063 0.85996 0.88873 0.87859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.39 8.60 71.98 0.62 -3.77 16 2 C 0.21 7.83 1.15 -11.17 -0.01 7.81 16 3 C 0.04 1.90 6.40 88.26 0.56 2.47 16 4 N -0.44 -22.37 11.23 -300.12 -3.37 -25.74 16 5 C -0.23 -12.39 11.99 84.75 1.02 -11.38 16 6 C 0.12 6.91 6.50 22.95 0.15 7.06 16 7 C -0.44 -25.17 9.90 23.13 0.23 -24.94 16 8 H 0.10 6.01 8.06 -2.91 -0.02 5.99 16 9 C 0.06 3.08 5.52 85.31 0.47 3.56 16 10 N -0.81 -42.88 13.93 21.87 0.30 -42.58 16 11 Si 0.97 46.28 25.92 68.60 1.78 48.06 16 12 H -0.27 -13.37 7.11 99.48 0.71 -12.66 16 13 H -0.25 -10.60 7.11 99.48 0.71 -9.90 16 14 H -0.27 -13.59 6.51 99.48 0.65 -12.94 16 15 O -0.24 -13.17 6.06 0.65 0.00 -13.16 16 16 C -0.13 -3.90 6.26 31.59 0.20 -3.70 16 17 C -0.15 -3.41 7.15 31.90 0.23 -3.19 16 18 C 0.03 0.86 7.66 72.67 0.56 1.42 16 19 O -0.40 -15.21 10.66 -136.54 -1.46 -16.67 16 20 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 21 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 22 H 0.10 2.22 8.11 -2.39 -0.02 2.20 16 23 H 0.17 8.18 8.06 -2.91 -0.02 8.15 16 24 H 0.31 14.33 8.30 -92.71 -0.77 13.56 16 25 H 0.06 2.00 7.69 -2.39 -0.02 1.99 16 26 H 0.11 2.52 7.70 -2.39 -0.02 2.50 16 27 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.12 1.78 8.14 -2.38 -0.02 1.76 16 29 H 0.09 1.68 8.11 -2.39 -0.02 1.66 16 30 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -67.26 256.40 2.35 -64.90 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: 1.07 Total: 9.85 kcal Atomic # 6 Polarization: -28.68 SS G_CDS: 4.02 Total: -24.66 kcal Atomic # 7 Polarization: -65.25 SS G_CDS: -3.07 Total: -68.32 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: -1.45 Total: -29.83 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 1.78 Total: 48.06 kcal Total: -67.26 2.35 -64.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260108026.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.038 kcal (2) G-P(sol) polarization free energy of solvation -67.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds