Wall clock time and date at job start Mon Mar 30 2020 03:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 110.45496 * 2 1 4 4 N 1.30801 * 125.15568 * 297.41710 * 3 2 1 5 5 C 1.33329 * 109.25362 * 180.02562 * 4 3 2 6 6 C 1.39422 * 107.08336 * 0.02562 * 5 4 3 7 7 C 1.39847 * 126.87136 * 180.02562 * 6 5 4 8 8 H 1.07991 * 120.00146 * 164.20329 * 7 6 5 9 9 C 1.40168 * 119.99764 * 344.19645 * 7 6 5 10 10 N 1.30804 * 120.00388 * 331.90845 * 9 7 6 11 11 Si 1.86802 * 119.99999 * 151.90587 * 9 7 6 12 12 H 1.48503 * 109.46898 * 0.02562 * 11 9 7 13 13 H 1.48493 * 109.47435 * 120.00025 * 11 9 7 14 14 H 1.48498 * 109.47353 * 240.00517 * 11 9 7 15 15 O 1.34021 * 125.15182 * 117.73329 * 3 2 1 16 16 C 1.54507 * 110.51285 * 237.39544 * 2 1 3 17 17 C 1.54483 * 104.06000 * 241.21738 * 16 2 1 18 18 O 1.44417 * 104.80421 * 23.97881 * 17 16 2 19 19 C 1.44419 * 105.27657 * 319.48629 * 18 17 16 20 20 H 1.09002 * 109.47147 * 60.70497 * 1 2 3 21 21 H 1.09003 * 109.47091 * 180.70121 * 1 2 3 22 22 H 1.08999 * 109.47343 * 300.70222 * 1 2 3 23 23 H 1.08001 * 126.45645 * 179.97438 * 5 4 3 24 24 H 0.96998 * 119.99883 * 354.30046 * 10 9 7 25 25 H 1.08998 * 110.51109 * 359.85738 * 16 2 1 26 26 H 1.09002 * 110.51424 * 122.57494 * 16 2 1 27 27 H 1.09009 * 110.36991 * 142.81145 * 17 16 2 28 28 H 1.09003 * 110.37298 * 265.14344 * 17 16 2 29 29 H 1.09004 * 110.37544 * 281.68349 * 19 18 17 30 30 H 1.09000 * 110.37381 * 159.34416 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0566 1.4120 0.0000 4 7 1.8585 2.2897 -0.9493 5 6 2.4646 3.4322 -0.6253 6 6 3.0769 3.2345 0.6116 7 6 3.8261 4.1673 1.3357 8 1 4.0360 3.9967 2.3812 9 6 4.3046 5.3237 0.7044 10 7 4.5548 5.3121 -0.5795 11 14 4.5850 6.8814 1.6965 12 1 4.2293 6.6344 3.1169 13 1 6.0138 7.2756 1.6059 14 1 3.7352 7.9725 1.1555 15 8 2.8041 1.9567 0.9699 16 6 2.0714 -0.7798 -1.2191 17 6 2.8787 -1.9393 -0.5945 18 8 2.3119 -2.1165 0.7220 19 6 2.0742 -0.7807 1.2168 20 1 -0.3633 0.5028 -0.8962 21 1 -0.3633 -1.0276 0.0126 22 1 -0.3634 0.5247 0.8836 23 1 2.4794 4.3394 -1.2110 24 1 4.4887 4.4832 -1.0790 25 1 1.2491 -1.1674 -1.8204 26 1 2.7201 -0.1440 -1.8217 27 1 2.7575 -2.8474 -1.1852 28 1 3.9327 -1.6715 -0.5209 29 1 3.0048 -0.3350 1.5683 30 1 1.3350 -0.7987 2.0177 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260119257.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:19 Heat of formation + Delta-G solvation = -54.745348 kcal Electronic energy + Delta-G solvation = -15401.563816 eV Core-core repulsion = 12776.410535 eV Total energy + Delta-G solvation = -2625.153281 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.32269 -39.12729 -34.49867 -33.76874 -32.62488 -29.60441 -28.52149 -26.18332 -25.03981 -22.47103 -21.52631 -20.69503 -18.82378 -18.23052 -16.34663 -15.94115 -14.94261 -14.68451 -14.55306 -14.10848 -13.89700 -13.54828 -13.01018 -12.48849 -12.29839 -11.96686 -11.32704 -11.28630 -11.17881 -10.87331 -10.67382 -10.56457 -10.51835 -10.28674 -9.72511 -9.48218 -9.33740 -8.94161 -7.57680 -7.53378 -4.69127 2.81253 3.05340 3.25613 3.31048 3.78759 4.08311 4.11712 4.44502 4.77405 4.83449 5.07118 5.23068 5.41910 5.46100 5.68635 5.85709 5.96549 6.01298 6.10877 6.14314 6.19846 6.46830 6.53832 6.80437 6.89427 7.03700 7.26784 7.60397 7.74693 8.07855 8.25244 8.46622 9.47745 9.79586 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.052830 B = 0.007118 C = 0.006956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.878679 B = 3932.775096 C = 4024.457787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.033 3.967 3 C 0.028 3.972 4 N -0.436 5.436 5 C -0.227 4.227 6 C 0.155 3.845 7 C -0.498 4.498 8 H 0.086 0.914 9 C 0.047 3.953 10 N -0.779 5.779 11 Si 1.085 2.915 12 H -0.274 1.274 13 H -0.275 1.275 14 H -0.270 1.270 15 O -0.240 6.240 16 C -0.139 4.139 17 C 0.045 3.955 18 O -0.379 6.379 19 C 0.054 3.946 20 H 0.065 0.935 21 H 0.060 0.940 22 H 0.055 0.945 23 H 0.156 0.844 24 H 0.305 0.695 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.089 0.911 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.324 -6.479 1.367 7.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.032 3.968 3 C -0.172 4.172 4 N -0.163 5.163 5 C -0.372 4.372 6 C 0.102 3.898 7 C -0.527 4.527 8 H 0.104 0.896 9 C -0.178 4.178 10 N -0.402 5.402 11 Si 0.906 3.094 12 H -0.198 1.198 13 H -0.200 1.200 14 H -0.195 1.195 15 O -0.133 6.133 16 C -0.177 4.177 17 C -0.032 4.032 18 O -0.297 6.297 19 C -0.023 4.023 20 H 0.084 0.916 21 H 0.079 0.921 22 H 0.074 0.926 23 H 0.173 0.827 24 H 0.119 0.881 25 H 0.097 0.903 26 H 0.102 0.898 27 H 0.107 0.893 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.279 -5.333 0.762 5.849 hybrid contribution 0.038 -1.095 0.473 1.194 sum -2.241 -6.428 1.236 6.919 Atomic orbital electron populations 1.21810 0.92729 1.01253 1.02748 1.19673 0.95626 0.86125 0.95381 1.24050 1.08285 0.97134 0.87719 1.69298 1.19149 1.01094 1.26795 1.22889 1.14797 0.97990 1.01517 1.20701 0.94736 0.80520 0.93872 1.19471 1.31669 1.02478 0.99046 0.89633 1.27203 0.91519 1.02772 0.96262 1.70342 1.27448 1.33838 1.08593 0.83369 0.77880 0.72962 0.75153 1.19830 1.19996 1.19505 1.84360 1.58835 1.24502 1.45553 1.23059 1.00529 0.96567 0.97527 1.23435 0.97144 0.98526 0.84086 1.89049 1.83211 1.26300 1.31178 1.23497 1.01026 0.81863 0.95872 0.91627 0.92122 0.92576 0.82695 0.88090 0.90338 0.89789 0.89256 0.92407 0.91258 0.88860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.10 8.28 37.16 0.31 -1.79 16 2 C 0.03 0.63 1.02 -154.09 -0.16 0.47 16 3 C 0.03 0.67 6.33 -12.72 -0.08 0.59 16 4 N -0.44 -11.38 11.23 -10.02 -0.11 -11.50 16 5 C -0.23 -6.27 10.06 -16.46 -0.17 -6.44 16 6 C 0.15 4.32 6.74 -38.54 -0.26 4.06 16 7 C -0.50 -13.32 9.31 -38.26 -0.36 -13.68 16 8 H 0.09 2.21 7.98 -52.49 -0.42 1.79 16 9 C 0.05 1.16 5.22 -17.27 -0.09 1.07 16 10 N -0.78 -20.30 12.59 55.56 0.70 -19.60 16 11 Si 1.08 20.80 30.02 -169.99 -5.10 15.69 16 12 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 13 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 14 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 15 O -0.24 -6.38 9.70 3.09 0.03 -6.35 16 16 C -0.14 -2.29 6.37 -25.16 -0.16 -2.45 16 17 C 0.04 0.66 7.63 37.94 0.29 0.95 16 18 O -0.38 -6.33 11.65 -35.23 -0.41 -6.74 16 19 C 0.05 0.95 6.60 37.93 0.25 1.21 16 20 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 21 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 22 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 23 H 0.16 4.30 6.94 -52.49 -0.36 3.94 16 24 H 0.31 8.28 6.55 -40.82 -0.27 8.01 16 25 H 0.08 1.13 7.73 -51.93 -0.40 0.73 16 26 H 0.08 1.54 7.73 -51.93 -0.40 1.14 16 27 H 0.09 1.06 8.14 -51.92 -0.42 0.64 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.07 1.33 7.16 -51.93 -0.37 0.96 16 30 H 0.09 1.47 7.87 -51.93 -0.41 1.06 16 LS Contribution 256.74 15.07 3.87 3.87 Total: -1.00 -29.23 256.74 -4.99 -34.23 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -3.54 Total: 6.41 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: -0.42 Total: -16.01 kcal Atomic # 7 Polarization: -31.69 SS G_CDS: 0.59 Total: -31.10 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: -0.38 Total: -13.09 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.10 Total: 15.69 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -29.23 -4.99 -34.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260119257.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.519 kcal (2) G-P(sol) polarization free energy of solvation -29.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds