Wall clock time and date at job start Mon Mar 30 2020 03:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 110.45496 * 2 1 4 4 N 1.30801 * 125.15568 * 297.41710 * 3 2 1 5 5 C 1.33329 * 109.25362 * 180.02562 * 4 3 2 6 6 C 1.39422 * 107.08336 * 0.02562 * 5 4 3 7 7 C 1.39847 * 126.87136 * 180.02562 * 6 5 4 8 8 H 1.07991 * 120.00146 * 164.20329 * 7 6 5 9 9 C 1.40168 * 119.99764 * 344.19645 * 7 6 5 10 10 N 1.30804 * 120.00388 * 331.90845 * 9 7 6 11 11 Si 1.86802 * 119.99999 * 151.90587 * 9 7 6 12 12 H 1.48503 * 109.46898 * 0.02562 * 11 9 7 13 13 H 1.48493 * 109.47435 * 120.00025 * 11 9 7 14 14 H 1.48498 * 109.47353 * 240.00517 * 11 9 7 15 15 O 1.34021 * 125.15182 * 117.73329 * 3 2 1 16 16 C 1.54507 * 110.51285 * 237.39544 * 2 1 3 17 17 C 1.54483 * 104.06000 * 241.21738 * 16 2 1 18 18 O 1.44417 * 104.80421 * 23.97881 * 17 16 2 19 19 C 1.44419 * 105.27657 * 319.48629 * 18 17 16 20 20 H 1.09002 * 109.47147 * 60.70497 * 1 2 3 21 21 H 1.09003 * 109.47091 * 180.70121 * 1 2 3 22 22 H 1.08999 * 109.47343 * 300.70222 * 1 2 3 23 23 H 1.08001 * 126.45645 * 179.97438 * 5 4 3 24 24 H 0.96998 * 119.99883 * 354.30046 * 10 9 7 25 25 H 1.08998 * 110.51109 * 359.85738 * 16 2 1 26 26 H 1.09002 * 110.51424 * 122.57494 * 16 2 1 27 27 H 1.09009 * 110.36991 * 142.81145 * 17 16 2 28 28 H 1.09003 * 110.37298 * 265.14344 * 17 16 2 29 29 H 1.09004 * 110.37544 * 281.68349 * 19 18 17 30 30 H 1.09000 * 110.37381 * 159.34416 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0566 1.4120 0.0000 4 7 1.8585 2.2897 -0.9493 5 6 2.4646 3.4322 -0.6253 6 6 3.0769 3.2345 0.6116 7 6 3.8261 4.1673 1.3357 8 1 4.0360 3.9967 2.3812 9 6 4.3046 5.3237 0.7044 10 7 4.5548 5.3121 -0.5795 11 14 4.5850 6.8814 1.6965 12 1 4.2293 6.6344 3.1169 13 1 6.0138 7.2756 1.6059 14 1 3.7352 7.9725 1.1555 15 8 2.8041 1.9567 0.9699 16 6 2.0714 -0.7798 -1.2191 17 6 2.8787 -1.9393 -0.5945 18 8 2.3119 -2.1165 0.7220 19 6 2.0742 -0.7807 1.2168 20 1 -0.3633 0.5028 -0.8962 21 1 -0.3633 -1.0276 0.0126 22 1 -0.3634 0.5247 0.8836 23 1 2.4794 4.3394 -1.2110 24 1 4.4887 4.4832 -1.0790 25 1 1.2491 -1.1674 -1.8204 26 1 2.7201 -0.1440 -1.8217 27 1 2.7575 -2.8474 -1.1852 28 1 3.9327 -1.6715 -0.5209 29 1 3.0048 -0.3350 1.5683 30 1 1.3350 -0.7987 2.0177 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260119257.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:18 Heat of formation + Delta-G solvation = -75.969779 kcal Electronic energy + Delta-G solvation = -15402.484176 eV Core-core repulsion = 12776.410535 eV Total energy + Delta-G solvation = -2626.073641 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.35119 -40.52157 -36.43930 -35.47532 -34.46852 -30.97231 -30.45150 -27.59705 -26.96854 -23.85613 -23.31217 -22.68327 -20.53040 -20.22217 -17.97370 -17.36442 -16.75822 -16.44260 -16.17652 -15.80535 -15.61744 -15.01962 -14.66101 -14.17357 -13.71040 -13.33045 -13.27200 -12.96094 -12.58059 -12.28111 -12.22187 -12.13728 -11.91356 -11.81087 -11.74333 -11.18291 -11.01485 -10.80250 -9.65499 -9.56098 -6.77407 0.91591 1.48368 1.66236 1.80813 2.10342 2.18146 2.41270 2.79450 2.96523 3.29438 3.68418 3.80916 3.94099 4.17693 4.20078 4.59234 4.62759 4.67316 4.71836 4.75865 4.77010 4.92889 4.98490 5.07972 5.18325 5.23900 5.49127 5.64661 5.70888 6.05171 6.15120 6.45551 7.40710 7.74589 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.052830 B = 0.007118 C = 0.006956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.878679 B = 3932.775096 C = 4024.457787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.021 3.979 3 C 0.051 3.949 4 N -0.456 5.456 5 C -0.253 4.253 6 C 0.127 3.873 7 C -0.522 4.522 8 H 0.089 0.911 9 C 0.015 3.985 10 N -0.791 5.791 11 Si 1.137 2.863 12 H -0.258 1.258 13 H -0.257 1.257 14 H -0.261 1.261 15 O -0.252 6.252 16 C -0.136 4.136 17 C 0.046 3.954 18 O -0.377 6.377 19 C 0.060 3.940 20 H 0.056 0.944 21 H 0.096 0.904 22 H 0.052 0.948 23 H 0.144 0.856 24 H 0.288 0.712 25 H 0.106 0.894 26 H 0.059 0.941 27 H 0.128 0.872 28 H 0.052 0.948 29 H 0.046 0.954 30 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.831 -7.454 2.029 8.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.019 3.981 3 C -0.151 4.151 4 N -0.183 5.183 5 C -0.396 4.396 6 C 0.074 3.926 7 C -0.550 4.550 8 H 0.107 0.893 9 C -0.204 4.204 10 N -0.414 5.414 11 Si 0.951 3.049 12 H -0.182 1.182 13 H -0.182 1.182 14 H -0.186 1.186 15 O -0.145 6.145 16 C -0.174 4.174 17 C -0.031 4.031 18 O -0.296 6.296 19 C -0.017 4.017 20 H 0.076 0.924 21 H 0.115 0.885 22 H 0.071 0.929 23 H 0.161 0.839 24 H 0.101 0.899 25 H 0.125 0.875 26 H 0.078 0.922 27 H 0.146 0.854 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.782 -6.308 1.395 7.034 hybrid contribution 0.170 -0.951 0.224 0.992 sum -2.612 -7.260 1.619 7.883 Atomic orbital electron populations 1.21786 0.90441 1.03439 1.02232 1.20155 0.97390 0.83128 0.97427 1.25396 1.05177 0.98595 0.85923 1.69295 1.20201 1.01164 1.27678 1.22741 1.16359 0.98446 1.02008 1.21058 0.95822 0.81232 0.94496 1.19854 1.32342 1.03477 0.99335 0.89286 1.28926 0.89734 1.05380 0.96359 1.70453 1.28835 1.32736 1.09348 0.82786 0.78873 0.68946 0.74299 1.18211 1.18162 1.18586 1.84380 1.59423 1.24326 1.46414 1.23064 1.01252 0.96469 0.96600 1.23596 0.96399 0.99518 0.83540 1.89060 1.83243 1.25303 1.31982 1.23398 1.00400 0.82083 0.95832 0.92440 0.88514 0.92886 0.83853 0.89928 0.87519 0.92245 0.85365 0.93002 0.93612 0.86841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.68 8.28 71.98 0.60 -3.09 16 2 C 0.02 0.74 1.02 -51.91 -0.05 0.69 16 3 C 0.05 2.49 6.33 88.26 0.56 3.05 16 4 N -0.46 -24.37 11.23 -300.11 -3.37 -27.74 16 5 C -0.25 -14.55 10.06 84.75 0.85 -13.70 16 6 C 0.13 7.30 6.74 22.94 0.15 7.45 16 7 C -0.52 -28.55 9.31 23.13 0.22 -28.34 16 8 H 0.09 4.66 7.98 -2.92 -0.02 4.64 16 9 C 0.01 0.75 5.22 85.31 0.45 1.19 16 10 N -0.79 -42.25 12.59 21.87 0.28 -41.97 16 11 Si 1.14 40.91 30.02 68.60 2.06 42.97 16 12 H -0.26 -8.60 7.11 99.48 0.71 -7.89 16 13 H -0.26 -8.54 7.11 99.48 0.71 -7.84 16 14 H -0.26 -9.03 7.11 99.48 0.71 -8.32 16 15 O -0.25 -13.70 9.70 -11.85 -0.11 -13.82 16 16 C -0.14 -4.19 6.37 31.61 0.20 -3.99 16 17 C 0.05 1.22 7.63 72.49 0.55 1.78 16 18 O -0.38 -11.47 11.65 -148.98 -1.74 -13.21 16 19 C 0.06 2.00 6.60 72.49 0.48 2.48 16 20 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 21 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 22 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 23 H 0.14 8.39 6.94 -2.91 -0.02 8.37 16 24 H 0.29 16.35 6.55 -92.71 -0.61 15.75 16 25 H 0.11 2.69 7.73 -2.39 -0.02 2.68 16 26 H 0.06 2.14 7.73 -2.39 -0.02 2.12 16 27 H 0.13 2.48 8.14 -2.38 -0.02 2.46 16 28 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.05 1.74 7.16 -2.38 -0.02 1.72 16 30 H 0.11 3.29 7.87 -2.39 -0.02 3.27 16 Total: -1.00 -64.60 256.74 2.42 -62.18 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: 1.30 Total: 24.05 kcal Atomic # 6 Polarization: -36.48 SS G_CDS: 4.00 Total: -32.47 kcal Atomic # 7 Polarization: -66.62 SS G_CDS: -3.10 Total: -69.71 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -1.85 Total: -27.03 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.06 Total: 42.97 kcal Total: -64.60 2.42 -62.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260119257.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.785 kcal (2) G-P(sol) polarization free energy of solvation -64.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds