Wall clock time and date at job start Mon Mar 30 2020 03:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99874 * 2 1 4 4 H 1.48496 * 109.47439 * 270.00213 * 3 2 1 5 5 H 1.48502 * 109.46850 * 30.00384 * 3 2 1 6 6 H 1.48499 * 109.46901 * 150.00098 * 3 2 1 7 7 C 1.37869 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99824 * 359.97438 * 7 2 1 9 9 C 1.50704 * 120.00266 * 180.02562 * 7 2 1 10 10 C 1.50694 * 109.47346 * 179.97438 * 9 7 2 11 11 C 1.34330 * 126.44286 * 90.02022 * 10 9 7 12 12 N 1.34484 * 107.66836 * 179.73187 * 11 10 9 13 13 C 1.30250 * 108.70027 * 0.27078 * 12 11 10 14 14 C 1.50702 * 125.62048 * 179.97438 * 13 12 11 15 15 H 1.09007 * 109.87000 * 164.32014 * 14 13 12 16 16 C 1.54099 * 109.87544 * 285.32724 * 14 13 12 17 17 C 1.54814 * 104.18726 * 121.45532 * 16 14 13 18 18 C 1.55002 * 102.09137 * 20.87652 * 17 16 14 19 19 O 1.43749 * 109.87731 * 43.31357 * 14 13 12 20 20 O 1.33972 * 108.76227 * 359.97438 * 13 12 11 21 21 H 0.97001 * 120.00360 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.46858 * 59.99488 * 9 7 2 23 23 H 1.09001 * 109.46711 * 299.99930 * 9 7 2 24 24 H 1.08002 * 126.16884 * 0.02562 * 11 10 9 25 25 H 1.09003 * 110.48790 * 240.12333 * 16 14 13 26 26 H 1.08994 * 110.49161 * 2.77696 * 16 14 13 27 27 H 1.08998 * 110.91124 * 139.07790 * 17 16 14 28 28 H 1.08996 * 110.90381 * 262.64465 * 17 16 14 29 29 H 1.08997 * 110.61354 * 81.47965 * 18 17 16 30 30 H 1.08999 * 110.61661 * 204.47663 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0139 -2.6148 -0.0001 11 6 4.2806 -3.3668 -1.0808 12 7 4.7104 -4.5654 -0.6480 13 6 4.7068 -4.5650 0.6545 14 6 5.1183 -5.7177 1.5337 15 1 5.2838 -5.3662 2.5521 16 6 4.0221 -6.8008 1.5247 17 6 4.7454 -8.0683 1.0080 18 6 6.2313 -7.7344 1.2959 19 8 6.3203 -6.3176 1.0222 20 8 4.2770 -3.3709 1.0838 21 1 -0.4851 0.8400 0.0004 22 1 3.8745 -0.6807 0.8905 23 1 3.8752 -0.6796 -0.8895 24 1 4.1741 -3.0620 -2.1114 25 1 3.6390 -6.9642 2.5320 26 1 3.2142 -6.5203 0.8490 27 1 4.4299 -8.9505 1.5649 28 1 4.5766 -8.2041 -0.0603 29 1 6.4753 -7.9380 2.3386 30 1 6.8869 -8.2962 0.6305 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260135326.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:05 Heat of formation + Delta-G solvation = -27.843376 kcal Electronic energy + Delta-G solvation = -14850.933483 eV Core-core repulsion = 12226.946759 eV Total energy + Delta-G solvation = -2623.986724 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.65426 -39.33882 -34.01007 -33.62022 -32.26805 -31.54327 -29.87758 -26.71583 -23.68124 -22.77568 -21.75062 -20.96828 -20.16177 -17.25890 -17.03561 -16.35125 -15.74803 -15.45309 -15.02155 -14.29760 -13.71208 -13.61077 -13.28291 -12.79115 -12.31555 -11.89403 -11.85493 -11.79106 -11.39856 -10.94288 -10.87410 -10.72356 -10.61217 -10.23091 -9.92045 -9.80276 -9.56450 -8.72193 -7.87391 -6.20681 -4.23199 2.11882 2.97714 3.20918 3.28991 3.30346 3.35184 4.08777 4.29096 4.31580 4.63675 4.76171 4.82268 5.05564 5.11040 5.18449 5.51568 5.55435 5.65250 5.79355 5.86413 5.91164 6.02119 6.27168 6.48940 6.69835 6.76060 6.96555 7.07940 7.44349 8.30709 8.39085 8.81064 9.35860 10.91771 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.061344 B = 0.005896 C = 0.005703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.336125 B = 4747.499034 C = 4908.908162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.075 3.925 3 Si 0.878 3.122 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.526 4.526 8 H 0.076 0.924 9 C 0.059 3.941 10 C 0.034 3.966 11 C -0.079 4.079 12 N -0.454 5.454 13 C 0.137 3.863 14 C 0.187 3.813 15 H 0.093 0.907 16 C -0.145 4.145 17 C -0.151 4.151 18 C 0.046 3.954 19 O -0.355 6.355 20 O -0.198 6.198 21 H 0.268 0.732 22 H 0.040 0.960 23 H 0.052 0.948 24 H 0.179 0.821 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.063 0.937 30 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.952 -12.184 3.593 16.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.128 4.128 3 Si 0.704 3.296 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.188 1.188 7 C -0.564 4.564 8 H 0.094 0.906 9 C 0.022 3.978 10 C -0.020 4.020 11 C -0.218 4.218 12 N -0.184 5.184 13 C -0.069 4.069 14 C 0.128 3.872 15 H 0.111 0.889 16 C -0.183 4.183 17 C -0.189 4.189 18 C -0.030 4.030 19 O -0.274 6.274 20 O -0.085 6.085 21 H 0.078 0.922 22 H 0.058 0.942 23 H 0.070 0.930 24 H 0.197 0.803 25 H 0.104 0.896 26 H 0.105 0.895 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.082 0.918 30 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 10.142 -12.458 3.182 16.376 hybrid contribution -0.161 1.439 0.359 1.492 sum 9.981 -11.018 3.541 15.283 Atomic orbital electron populations 1.69881 1.06258 1.27338 1.49498 1.24927 0.94815 0.99017 0.94037 0.86806 0.80430 0.83436 0.78933 1.19749 1.20845 1.18800 1.20820 0.87509 0.95172 1.52868 0.90617 1.18447 0.97716 0.82699 0.98984 1.24249 0.98001 0.96417 0.83305 1.22935 1.08277 0.89984 1.00557 1.70217 1.16474 1.22680 1.09031 1.25431 1.03995 0.87128 0.90389 1.20510 0.85719 0.87635 0.93299 0.88900 1.22984 0.98496 0.93670 1.03160 1.23119 0.95125 0.97725 1.02909 1.23634 0.96842 0.81808 1.00728 1.89016 1.36838 1.20022 1.81482 1.84356 1.63939 1.22795 1.37383 0.92248 0.94204 0.92965 0.80346 0.89563 0.89514 0.89958 0.89970 0.91846 0.88622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.77 13.96 55.43 0.77 -26.00 16 2 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 3 Si 0.88 20.58 27.47 -169.99 -4.67 15.91 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.26 -5.90 6.54 56.52 0.37 -5.53 16 7 C -0.53 -14.82 9.65 -34.44 -0.33 -15.15 16 8 H 0.08 2.36 7.98 -52.48 -0.42 1.94 16 9 C 0.06 1.41 4.59 -29.04 -0.13 1.28 16 10 C 0.03 0.77 6.58 -35.69 -0.23 0.54 16 11 C -0.08 -1.69 11.80 -17.77 -0.21 -1.90 16 12 N -0.45 -9.55 11.29 -11.10 -0.13 -9.67 16 13 C 0.14 2.70 7.03 -12.95 -0.09 2.61 16 14 C 0.19 2.79 3.98 -27.31 -0.11 2.68 16 15 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 16 C -0.14 -1.75 6.63 -25.20 -0.17 -1.92 16 17 C -0.15 -1.47 7.16 -24.72 -0.18 -1.65 16 18 C 0.05 0.46 7.72 38.21 0.29 0.76 16 19 O -0.36 -5.31 11.18 -35.23 -0.39 -5.71 16 20 O -0.20 -4.36 10.78 5.35 0.06 -4.30 16 21 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 22 H 0.04 0.94 7.20 -51.93 -0.37 0.56 16 23 H 0.05 1.16 7.57 -51.93 -0.39 0.77 16 24 H 0.18 3.39 8.06 -52.49 -0.42 2.96 16 25 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.09 1.23 7.69 -51.93 -0.40 0.83 16 27 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 261.69 15.07 3.94 3.94 Total: -1.00 -32.27 261.69 -5.38 -37.65 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: -3.71 Total: -1.08 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: -1.26 Total: -10.74 kcal Atomic # 7 Polarization: -36.32 SS G_CDS: 0.65 Total: -35.67 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: -0.34 Total: -10.01 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.67 Total: 15.91 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -32.27 -5.38 -37.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260135326.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.808 kcal (2) G-P(sol) polarization free energy of solvation -32.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds