Wall clock time and date at job start Mon Mar 30 2020 03:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99874 * 2 1 4 4 H 1.48496 * 109.47439 * 270.00213 * 3 2 1 5 5 H 1.48502 * 109.46850 * 30.00384 * 3 2 1 6 6 H 1.48499 * 109.46901 * 150.00098 * 3 2 1 7 7 C 1.37869 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99824 * 359.97438 * 7 2 1 9 9 C 1.50704 * 120.00266 * 180.02562 * 7 2 1 10 10 C 1.50694 * 109.47346 * 179.97438 * 9 7 2 11 11 C 1.34330 * 126.44286 * 90.02022 * 10 9 7 12 12 N 1.34484 * 107.66836 * 179.73187 * 11 10 9 13 13 C 1.30250 * 108.70027 * 0.27078 * 12 11 10 14 14 C 1.50702 * 125.62048 * 179.97438 * 13 12 11 15 15 H 1.09007 * 109.87000 * 164.32014 * 14 13 12 16 16 C 1.54099 * 109.87544 * 285.32724 * 14 13 12 17 17 C 1.54814 * 104.18726 * 121.45532 * 16 14 13 18 18 C 1.55002 * 102.09137 * 20.87652 * 17 16 14 19 19 O 1.43749 * 109.87731 * 43.31357 * 14 13 12 20 20 O 1.33972 * 108.76227 * 359.97438 * 13 12 11 21 21 H 0.97001 * 120.00360 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.46858 * 59.99488 * 9 7 2 23 23 H 1.09001 * 109.46711 * 299.99930 * 9 7 2 24 24 H 1.08002 * 126.16884 * 0.02562 * 11 10 9 25 25 H 1.09003 * 110.48790 * 240.12333 * 16 14 13 26 26 H 1.08994 * 110.49161 * 2.77696 * 16 14 13 27 27 H 1.08998 * 110.91124 * 139.07790 * 17 16 14 28 28 H 1.08996 * 110.90381 * 262.64465 * 17 16 14 29 29 H 1.08997 * 110.61354 * 81.47965 * 18 17 16 30 30 H 1.08999 * 110.61661 * 204.47663 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0139 -2.6148 -0.0001 11 6 4.2806 -3.3668 -1.0808 12 7 4.7104 -4.5654 -0.6480 13 6 4.7068 -4.5650 0.6545 14 6 5.1183 -5.7177 1.5337 15 1 5.2838 -5.3662 2.5521 16 6 4.0221 -6.8008 1.5247 17 6 4.7454 -8.0683 1.0080 18 6 6.2313 -7.7344 1.2959 19 8 6.3203 -6.3176 1.0222 20 8 4.2770 -3.3709 1.0838 21 1 -0.4851 0.8400 0.0004 22 1 3.8745 -0.6807 0.8905 23 1 3.8752 -0.6796 -0.8895 24 1 4.1741 -3.0620 -2.1114 25 1 3.6390 -6.9642 2.5320 26 1 3.2142 -6.5203 0.8490 27 1 4.4299 -8.9505 1.5649 28 1 4.5766 -8.2041 -0.0603 29 1 6.4753 -7.9380 2.3386 30 1 6.8869 -8.2962 0.6305 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260135326.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:05 Heat of formation + Delta-G solvation = -52.392709 kcal Electronic energy + Delta-G solvation = -14851.998022 eV Core-core repulsion = 12226.946759 eV Total energy + Delta-G solvation = -2625.051263 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -44.29853 -40.34548 -35.68615 -35.61491 -33.54507 -33.05001 -31.24227 -28.33966 -25.16958 -24.38982 -22.79379 -22.46868 -21.71028 -19.17491 -18.57540 -17.56312 -17.15185 -16.82275 -16.50756 -15.91004 -15.25754 -14.81125 -14.60816 -14.38815 -14.08161 -13.70151 -12.94959 -12.88860 -12.75374 -12.52487 -12.27727 -12.15593 -12.02112 -11.75761 -11.72999 -11.48022 -10.89129 -10.85610 -9.56273 -8.37107 -6.47210 0.49087 1.38512 1.39291 1.48846 1.53850 1.72652 2.31578 2.93556 2.97888 3.08049 3.56041 3.79407 3.89739 4.08832 4.18011 4.25914 4.34843 4.61403 4.68815 4.74577 4.81581 4.90117 4.91844 5.01718 5.16167 5.24694 5.37555 5.39652 5.77123 6.10924 6.56178 6.74709 7.16497 8.79327 Molecular weight = 223.10amu Principal moments of inertia in cm(-1) A = 0.061344 B = 0.005896 C = 0.005703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.336125 B = 4747.499034 C = 4908.908162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.016 3.984 3 Si 0.955 3.045 4 H -0.257 1.257 5 H -0.280 1.280 6 H -0.242 1.242 7 C -0.539 4.539 8 H 0.024 0.976 9 C 0.067 3.933 10 C -0.002 4.002 11 C -0.075 4.075 12 N -0.477 5.477 13 C 0.150 3.850 14 C 0.181 3.819 15 H 0.116 0.884 16 C -0.144 4.144 17 C -0.144 4.144 18 C 0.041 3.959 19 O -0.384 6.384 20 O -0.212 6.212 21 H 0.272 0.728 22 H 0.046 0.954 23 H 0.075 0.925 24 H 0.197 0.803 25 H 0.116 0.884 26 H 0.057 0.943 27 H 0.117 0.883 28 H 0.067 0.933 29 H 0.092 0.908 30 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.799 -12.533 4.331 17.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.182 4.182 3 Si 0.776 3.224 4 H -0.181 1.181 5 H -0.205 1.205 6 H -0.166 1.166 7 C -0.577 4.577 8 H 0.043 0.957 9 C 0.030 3.970 10 C -0.055 4.055 11 C -0.213 4.213 12 N -0.207 5.207 13 C -0.058 4.058 14 C 0.122 3.878 15 H 0.133 0.867 16 C -0.182 4.182 17 C -0.181 4.181 18 C -0.034 4.034 19 O -0.303 6.303 20 O -0.100 6.100 21 H 0.081 0.919 22 H 0.064 0.936 23 H 0.093 0.907 24 H 0.214 0.786 25 H 0.135 0.865 26 H 0.076 0.924 27 H 0.135 0.865 28 H 0.086 0.914 29 H 0.110 0.890 30 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 12.004 -12.834 3.904 18.002 hybrid contribution -0.762 1.347 0.148 1.555 sum 11.242 -11.488 4.052 16.576 Atomic orbital electron populations 1.70037 1.08466 1.28826 1.50828 1.25958 0.95687 1.03502 0.93094 0.85596 0.79493 0.77352 0.79931 1.18105 1.20548 1.16567 1.20987 0.90021 0.93482 1.53201 0.95740 1.18283 0.94609 0.84042 1.00110 1.24105 1.00653 0.96720 0.84030 1.23283 1.06883 0.89904 1.01181 1.70269 1.17956 1.22575 1.09918 1.26699 1.01103 0.87109 0.90856 1.20964 0.86940 0.86887 0.93015 0.86658 1.23035 0.96989 0.93795 1.04417 1.23127 0.94717 0.97784 1.02501 1.23967 0.97191 0.79336 1.02902 1.88980 1.36608 1.22747 1.81961 1.84335 1.64412 1.23664 1.37547 0.91863 0.93554 0.90749 0.78623 0.86518 0.92393 0.86497 0.91419 0.88976 0.87222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.02 13.96 21.44 0.30 -57.72 16 2 C 0.02 0.91 5.47 84.65 0.46 1.38 16 3 Si 0.96 41.82 27.47 68.60 1.88 43.71 16 4 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 5 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 6 H -0.24 -9.74 6.54 99.48 0.65 -9.08 16 7 C -0.54 -31.24 9.65 25.60 0.25 -30.99 16 8 H 0.02 1.61 7.98 -2.91 -0.02 1.58 16 9 C 0.07 3.18 4.59 29.10 0.13 3.32 16 10 C 0.00 -0.10 6.58 24.79 0.16 0.07 16 11 C -0.08 -3.23 11.80 83.39 0.98 -2.24 16 12 N -0.48 -20.15 11.29 -303.82 -3.43 -23.58 16 13 C 0.15 5.87 7.03 88.34 0.62 6.49 16 14 C 0.18 5.12 3.98 30.22 0.12 5.24 16 15 H 0.12 2.72 8.14 -2.38 -0.02 2.70 16 16 C -0.14 -3.23 6.63 31.59 0.21 -3.02 16 17 C -0.14 -2.42 7.16 31.90 0.23 -2.19 16 18 C 0.04 0.70 7.72 72.67 0.56 1.26 16 19 O -0.38 -10.78 11.18 -148.98 -1.67 -12.45 16 20 O -0.21 -9.41 10.78 -3.76 -0.04 -9.45 16 21 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 22 H 0.05 2.12 7.20 -2.39 -0.02 2.11 16 23 H 0.07 3.18 7.57 -2.39 -0.02 3.16 16 24 H 0.20 7.41 8.06 -2.91 -0.02 7.38 16 25 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.06 1.64 7.69 -2.39 -0.02 1.62 16 27 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -72.22 261.69 1.86 -70.37 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: 1.08 Total: 9.82 kcal Atomic # 6 Polarization: -24.42 SS G_CDS: 3.73 Total: -20.69 kcal Atomic # 7 Polarization: -78.17 SS G_CDS: -3.13 Total: -81.30 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: -1.71 Total: -21.90 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 1.88 Total: 43.71 kcal Total: -72.22 1.86 -70.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260135326.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.975 kcal (2) G-P(sol) polarization free energy of solvation -72.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds